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Cow genome map

           
Conread name:
           
Emb1-C0005181_A14
        

               
Conread position:
               
144-461
               

               
Cow position:
               
chr29:35442273-35442598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 216
               

               
Conread position:
               
144-475
               

               
Cow position:
               
chr29:11053685-11054010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
145-466
               

               
Cow position:
               
chr29:19907537-19907216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
97, 27
               

               
Conread position:
               
152-475
               

               
Cow position:
               
chr29:22895907-22895571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
65, 200
               

               
Conread position:
               
154-465
               

               
Cow position:
               
chr29:31926120-31926430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
66, 105
               

               
Conread position:
               
155-435
               

               
Cow position:
               
chr29:8862303-8862590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
64, 139
               

               
Conread position:
               
155-465
               

               
Cow position:
               
chr29:1229766-1229471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
154, 52
               

               
Conread position:
               
155-475
               

               
Cow position:
               
chr29:11366410-11366090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
156-475
               

               
Cow position:
               
chr29:32655248-32655576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
157-473
               

               
Cow position:
               
chr29:12762130-12761809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
69, 189
               

               
Conread position:
               
158-443
               

               
Cow position:
               
chr29:12625805-12626098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
61, 187
               

               
Conread position:
               
162-475
               

               
Cow position:
               
chr29:16309910-16309590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
163-407
               

               
Cow position:
               
chr29:21186705-21186956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 55
               

               
Conread position:
               
163-409
               

               
Cow position:
               
chr29:6208229-6207980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 175
               

               
Conread position:
               
163-413
               

               
Cow position:
               
chr29:13487110-13486861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
70, 62
               

               
Conread position:
               
163-420
               

               
Cow position:
               
chr29:22721541-22721278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 187
               

               
Conread position:
               
163-454
               

               
Cow position:
               
chr29:13634132-13634427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 52
               

               
Conread position:
               
163-459
               

               
Cow position:
               
chr29:18021514-18021812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
56, 151
               

               
Conread position:
               
163-465
               

               
Cow position:
               
chr29:4367892-4367580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
56, 45
               

               
Conread position:
               
163-465
               

               
Cow position:
               
chr29:16657879-16657548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
56, 87
               

               
Conread position:
               
163-466
               

               
Cow position:
               
chr29:11787954-11787655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
61, 6
               

               
Conread position:
               
163-471
               

               
Cow position:
               
chr29:6926169-6925866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
163-471
               

               
Cow position:
               
chr29:24603965-24604293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
163-472
               

               
Cow position:
               
chr29:31593969-31594277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 94
               

               
Conread position:
               
163-477
               

               
Cow position:
               
chr29:28195345-28195666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
56, 150
               

               
Conread position:
               
164-415
               

               
Cow position:
               
chr29:21265928-21265672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
63, 53
               

               
Conread position:
               
164-464
               

               
Cow position:
               
chr29:6772297-6771993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
76, 177
               

               
Conread position:
               
164-465
               

               
Cow position:
               
chr29:12451530-12451234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
54, 5
               

               
Conread position:
               
164-465
               

               
Cow position:
               
chr29:44681945-44682237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 142
               

               
Conread position:
               
164-466
               

               
Cow position:
               
chr29:40337374-40337668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
64, 166
               

               
Conread position:
               
164-466
               

               
Cow position:
               
chr29:44008620-44008923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
89, 62
               

               
Conread position:
               
164-470
               

               
Cow position:
               
chr29:32963710-32963413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
164-471
               

               
Cow position:
               
chr29:27873751-27873457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
145, 47
               

               
Conread position:
               
164-471
               

               
Cow position:
               
chr29:39111137-39111461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 113
               

               
Conread position:
               
164-473
               

               
Cow position:
               
chr29:5947646-5947940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
164-474
               

               
Cow position:
               
chr29:7663105-7663419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
165-391
               

               
Cow position:
               
chr29:30350764-30351001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 181
               

               
Conread position:
               
165-443
               

               
Cow position:
               
chr29:4444885-4444596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
165-471
               

               
Cow position:
               
chr29:4085482-4085173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 147
               

               
Conread position:
               
166-471
               

               
Cow position:
               
chr29:39023172-39023491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 206
               

               
Conread position:
               
166-475
               

               
Cow position:
               
chr29:15940472-15940788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 177
               

               
Conread position:
               
167-475
               

               
Cow position:
               
chr29:26985392-26985073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
170-454
               

               
Cow position:
               
chr29:17154943-17154637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
171-471
               

               
Cow position:
               
chr29:16958-17250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
59, 96
               

               
Conread position:
               
173-416
               

               
Cow position:
               
chr29:30713558-30713800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 72
               

               
Conread position:
               
174-466
               

               
Cow position:
               
chr29:356479-356184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 179
               

               
Conread position:
               
180-470
               

               
Cow position:
               
chr29:18073092-18072788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
184-474
               

               
Cow position:
               
chr29:13126972-13127274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
35, 171
               

               
Conread position:
               
187-448
               

               
Cow position:
               
chr29:9512405-9512144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
39, 158
               

               
Conread position:
               
188-475
               

               
Cow position:
               
chr29:10235000-10235281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
198-467
               

               
Cow position:
               
chr29:21196526-21196796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
199-465
               

               
Cow position:
               
chr29:25923829-25924108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 145
               

               
Conread position:
               
206-405
               

               
Cow position:
               
chr29:8004812-8005003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
103, 84
               

               
Conread position:
               
208-471
               

               
Cow position:
               
chr29:1022408-1022147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
101, 23
               

               
Conread position:
               
208-471
               

               
Cow position:
               
chr29:16195953-16195703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
232, 89
               

               
Conread position:
               
208-477
               

               
Cow position:
               
chr29:26559133-26559394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
113, 81
               

               
Conread position:
               
209-471
               

               
Cow position:
               
chr29:35292205-35291944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
210-465
               

               
Cow position:
               
chr29:650396-650138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
212-475
               

               
Cow position:
               
chr29:8669472-8669211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
213-404
               

               
Cow position:
               
chr29:13867102-13867291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-405
               

               
Cow position:
               
chr29:22519019-22519210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
213-414
               

               
Cow position:
               
chr29:13373409-13373210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 128
               

               
Conread position:
               
213-429
               

               
Cow position:
               
chr29:8926353-8926568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 124
               

               
Conread position:
               
213-436
               

               
Cow position:
               
chr29:6015234-6015010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
88, 129
               

               
Conread position:
               
213-443
               

               
Cow position:
               
chr29:13028548-13028319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
149, 92
               

               
Conread position:
               
213-443
               

               
Cow position:
               
chr29:23874568-23874343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-444
               

               
Cow position:
               
chr29:26017394-26017623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-444
               

               
Cow position:
               
chr29:30227174-30227393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
213-448
               

               
Cow position:
               
chr29:5520377-5520629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
213-452
               

               
Cow position:
               
chr29:29512033-29512268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
213-452
               

               
Cow position:
               
chr29:40583893-40583665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
211, 15
               

               
Conread position:
               
213-454
               

               
Cow position:
               
chr29:20903182-20903414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
96, 107
               

               
Conread position:
               
213-454
               

               
Cow position:
               
chr29:25333353-25333591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-455
               

               
Cow position:
               
chr29:2262887-2263128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
96, 75
               

               
Conread position:
               
213-461
               

               
Cow position:
               
chr29:706849-707086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chr29:11647202-11646955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 148
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chr29:16609856-16609601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chr29:39567789-39567547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
104, 15
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chr29:11397819-11398064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chr29:11915928-11915679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
94, 76
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chr29:28166114-28166354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 81
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chr29:29057283-29057040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chr29:31489427-31489180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chr29:38581087-38580838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chr29:40097070-40096819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chr29:40959741-40959989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
96, 129
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:86904-87164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:463544-463800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:9912283-9912026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:13372771-13372519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:13639258-13639516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 130
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:19339109-19338837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 237
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:22175789-22175542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 109
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:29769243-29769497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
59, 73
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:31929095-31928835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
96, 54
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:32799604-32799858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
97, 77
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:34745551-34745808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:35084114-35084369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:36217220-36216971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
108, 80
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:38582076-38581829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr29:42771743-42771505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chr29:2056169-2055905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
96, 129
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chr29:6844524-6844781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
80, 121
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chr29:9709803-9709541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chr29:40298912-40299164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
96, 118
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chr29:43496148-43495904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
214-442
               

               
Cow position:
               
chr29:42886650-42886438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
215-400
               

               
Cow position:
               
chr29:7103664-7103480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
215-419
               

               
Cow position:
               
chr29:24578973-24578764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 152
               

               
Conread position:
               
215-467
               

               
Cow position:
               
chr29:6217439-6217690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 61
               

               
Conread position:
               
215-471
               

               
Cow position:
               
chr29:4334824-4334581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 75
               

               
Conread position:
               
216-443
               

               
Cow position:
               
chr29:25475028-25474801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 124
               

               
Conread position:
               
216-443
               

               
Cow position:
               
chr29:28775358-28775576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 95
               

               
Conread position:
               
216-466
               

               
Cow position:
               
chr29:44378314-44378560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
216-471
               

               
Cow position:
               
chr29:6293375-6293622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
93, 13
               

               
Conread position:
               
216-475
               

               
Cow position:
               
chr29:11562722-11562463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
6, 143
               

               
Conread position:
               
218-464
               

               
Cow position:
               
chr29:749794-750046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 129
               

               
Conread position:
               
218-466
               

               
Cow position:
               
chr29:12680258-12680017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
218-471
               

               
Cow position:
               
chr29:35458669-35458921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 58
               

               
Conread position:
               
219-432
               

               
Cow position:
               
chr29:28993963-28993753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
219-461
               

               
Cow position:
               
chr29:26615616-26615858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
219-466
               

               
Cow position:
               
chr29:19821384-19821146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
90, 9
               

               
Conread position:
               
219-471
               

               
Cow position:
               
chr29:24952786-24952542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 9
               

               
Conread position:
               
219-477
               

               
Cow position:
               
chr29:1325540-1325288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
221-466
               

               
Cow position:
               
chr29:19428770-19428517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
26, 130
               

               
Conread position:
               
221-470
               

               
Cow position:
               
chr29:17222513-17222267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
88, 112
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr29:2984989-2984738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr29:6337760-6337514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr29:9139516-9139263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr29:11434218-11433976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr29:11705222-11704979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 39
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr29:12025366-12025617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr29:23243779-23244026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr29:26416450-26416214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
100, 7
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr29:29314550-29314801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 141
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr29:35501555-35501797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
221-475
               

               
Cow position:
               
chr29:1395693-1395444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
221-475
               

               
Cow position:
               
chr29:9638221-9638467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
221-477
               

               
Cow position:
               
chr29:17409434-17409177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
221-477
               

               
Cow position:
               
chr29:32290708-32290449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
222-438
               

               
Cow position:
               
chr29:45589485-45589703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
28, 129
               

               
Conread position:
               
228-388
               

               
Cow position:
               
chr29:26263929-26263772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 109
               

               
Conread position:
               
228-466
               

               
Cow position:
               
chr29:4520429-4520194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
93, 67
               

               
Conread position:
               
228-466
               

               
Cow position:
               
chr29:22162156-22162394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
228-471
               

               
Cow position:
               
chr29:23983862-23984105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
228-472
               

               
Cow position:
               
chr29:5186400-5186642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 109
               

               
Conread position:
               
228-476
               

               
Cow position:
               
chr29:24624341-24624095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
81, 37
               

               
Conread position:
               
228-477
               

               
Cow position:
               
chr29:6870672-6870940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
81, 66
               

               
Conread position:
               
229-435
               

               
Cow position:
               
chr29:40994799-40995001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
82, 56
               

               
Conread position:
               
229-464
               

               
Cow position:
               
chr29:13554228-13553995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
229-466
               

               
Cow position:
               
chr29:6286069-6286300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
229-466
               

               
Cow position:
               
chr29:32521962-32521731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
229-467
               

               
Cow position:
               
chr29:23698070-23697833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
229-471
               

               
Cow position:
               
chr29:28868735-28868490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 111
               

               
Conread position:
               
230-433
               

               
Cow position:
               
chr29:5046744-5046543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
79, 102
               

               
Conread position:
               
230-443
               

               
Cow position:
               
chr29:23389466-23389675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
79, 59
               

               
Conread position:
               
237-465
               

               
Cow position:
               
chr29:37618390-37618166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
58, 96
               

               
Conread position:
               
237-466
               

               
Cow position:
               
chr29:24292952-24292727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 94
               

               
Conread position:
               
237-475
               

               
Cow position:
               
chr29:22068656-22068903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
71, 105
               

               
Conread position:
               
238-441
               

               
Cow position:
               
chr29:41530933-41530730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
71, 102
               

               
Conread position:
               
238-443
               

               
Cow position:
               
chr29:21941684-21941480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
72, 105
               

               
Conread position:
               
238-447
               

               
Cow position:
               
chr29:43251084-43251291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
70, 99
               

               
Conread position:
               
238-454
               

               
Cow position:
               
chr29:4120937-4120713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
71, 114
               

               
Conread position:
               
238-461
               

               
Cow position:
               
chr29:40853011-40852800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
71, 99
               

               
Conread position:
               
238-471
               

               
Cow position:
               
chr29:12783881-12784103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 27
               

               
Conread position:
               
238-471
               

               
Cow position:
               
chr29:21443255-21443490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
238-471
               

               
Cow position:
               
chr29:25088826-25088607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
238-471
               

               
Cow position:
               
chr29:27329976-27329747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 102
               

               
Conread position:
               
238-471
               

               
Cow position:
               
chr29:30188269-30188486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
186, 56
               

               
Conread position:
               
238-471
               

               
Cow position:
               
chr29:41365192-41364964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr29:36220617-36220381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
71, 135
               

               
Conread position:
               
238-477
               

               
Cow position:
               
chr29:2744184-2744425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
76, 102
               

               
Conread position:
               
239-466
               

               
Cow position:
               
chr29:22613512-22613285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 101
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr29:17668566-17668353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 66
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr29:25092185-25091966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
182, 53
               

               
Conread position:
               
243-466
               

               
Cow position:
               
chr29:27589001-27588782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 102
               

               
Conread position:
               
243-475
               

               
Cow position:
               
chr29:30441015-30440773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 100
               

               
Conread position:
               
245-468
               

               
Cow position:
               
chr29:18462475-18462698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
247-447
               

               
Cow position:
               
chr29:22936344-22936145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 91
               

               
Conread position:
               
247-466
               

               
Cow position:
               
chr29:22778102-22778319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 38
               

               
Conread position:
               
247-471
               

               
Cow position:
               
chr29:24103467-24103691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
75, 54
               

               
Conread position:
               
248-460
               

               
Cow position:
               
chr29:29795309-29795523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 91
               

               
Conread position:
               
248-474
               

               
Cow position:
               
chr29:2071496-2071724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
7, 95
               

               
Conread position:
               
249-460
               

               
Cow position:
               
chr29:10018651-10018439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
61, 90
               

               
Conread position:
               
250-454
               

               
Cow position:
               
chr29:26270138-26269937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 24
               

               
Conread position:
               
250-466
               

               
Cow position:
               
chr29:31674704-31674489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 90
               

               
Conread position:
               
250-471
               

               
Cow position:
               
chr29:868846-868627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
60, 90
               

               
Conread position:
               
250-471
               

               
Cow position:
               
chr29:3100196-3100404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
174, 54
               

               
Conread position:
               
250-471
               

               
Cow position:
               
chr29:15738269-15738487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 89
               

               
Conread position:
               
253-466
               

               
Cow position:
               
chr29:26986995-26986791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
253-466
               

               
Cow position:
               
chr29:36530935-36530726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
49, 56
               

               
Conread position:
               
254-466
               

               
Cow position:
               
chr29:17297203-17296990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
255-459
               

               
Cow position:
               
chr29:36183347-36183146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
54, 85
               

               
Conread position:
               
255-477
               

               
Cow position:
               
chr29:18735573-18735792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
108, 56
               

               
Conread position:
               
259-477
               

               
Cow position:
               
chr29:26771501-26771283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
262-465
               

               
Cow position:
               
chr29:4051929-4052124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 5
               

               
Conread position:
               
264-476
               

               
Cow position:
               
chr29:17301591-17301378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
266-453
               

               
Cow position:
               
chr29:43956947-43956764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
268-475
               

               
Cow position:
               
chr29:478161-477951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
276-475
               

               
Cow position:
               
chr29:21534627-21534831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
280-471
               

               
Cow position:
               
chr29:14484496-14484692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
289-464
               

               
Cow position:
               
chr29:45384160-45383986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
301-443
               

               
Cow position:
               
chr29:11489703-11489841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
302-471
               

               
Cow position:
               
chr29:40615502-40615669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
307-475
               

               
Cow position:
               
chr29:37292789-37292628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
117, 7
               

               
Conread position:
               
311-451
               

               
Cow position:
               
chr29:4194097-4194247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
313-477
               

               
Cow position:
               
chr29:11696537-11696378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
316-477
               

               
Cow position:
               
chr29:12798923-12798767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
338-471
               

               
Cow position:
               
chr29:3396091-3395960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
339-473
               

               
Cow position:
               
chr29:24197659-24197790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
355-475
               

               
Cow position:
               
chr29:585245-585126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
361-475
               

               
Cow position:
               
chr29:94589-94704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 47
               
Show alignments to all cow chromosomes.