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Cow genome map

           
Conread name:
           
Emb1-C0005181_A14
        

               
Conread position:
               
139-459
               

               
Cow position:
               
chrX:24259358-24259688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 215
               

               
Conread position:
               
145-315
               

               
Cow position:
               
chrX:6677045-6676860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
145-475
               

               
Cow position:
               
chrX:19879254-19878923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
146-413
               

               
Cow position:
               
chrX:39353007-39352720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
73, 153
               

               
Conread position:
               
146-467
               

               
Cow position:
               
chrX:23667331-23667007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
95, 37
               

               
Conread position:
               
149-420
               

               
Cow position:
               
chrX:6203754-6203478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 196
               

               
Conread position:
               
149-475
               

               
Cow position:
               
chrX:37575049-37574729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 199
               

               
Conread position:
               
154-475
               

               
Cow position:
               
chrX:17542168-17541840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 201
               

               
Conread position:
               
155-448
               

               
Cow position:
               
chrX:19678069-19678363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 147
               

               
Conread position:
               
155-466
               

               
Cow position:
               
chrX:25338390-25338070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
155-470
               

               
Cow position:
               
chrX:20377169-20376848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
155-470
               

               
Cow position:
               
chrX:39545785-39546090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
155-471
               

               
Cow position:
               
chrX:8925907-8925583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 167
               

               
Conread position:
               
155-471
               

               
Cow position:
               
chrX:10411796-10412103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
154, 57
               

               
Conread position:
               
155-471
               

               
Cow position:
               
chrX:31442613-31442940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
64, 202
               

               
Conread position:
               
155-475
               

               
Cow position:
               
chrX:11072993-11073315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
56, 185
               

               
Conread position:
               
155-477
               

               
Cow position:
               
chrX:38964324-38963981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
9, 198
               

               
Conread position:
               
156-453
               

               
Cow position:
               
chrX:157593-157876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
162, 50
               

               
Conread position:
               
162-412
               

               
Cow position:
               
chrX:23414177-23414431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 100
               

               
Conread position:
               
162-442
               

               
Cow position:
               
chrX:27771379-27771662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 141
               

               
Conread position:
               
162-465
               

               
Cow position:
               
chrX:8918032-8917740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
162-466
               

               
Cow position:
               
chrX:11747029-11746731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
163-399
               

               
Cow position:
               
chrX:43014442-43014686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
68, 117
               

               
Conread position:
               
163-415
               

               
Cow position:
               
chrX:4152826-4153097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
56, 198
               

               
Conread position:
               
163-440
               

               
Cow position:
               
chrX:20881743-20882025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
68, 125
               

               
Conread position:
               
163-461
               

               
Cow position:
               
chrX:11856620-11856320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 55
               

               
Conread position:
               
163-461
               

               
Cow position:
               
chrX:20791622-20791926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
163-464
               

               
Cow position:
               
chrX:23939856-23940136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
89, 60
               

               
Conread position:
               
163-465
               

               
Cow position:
               
chrX:5637961-5638277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
56, 77
               

               
Conread position:
               
163-465
               

               
Cow position:
               
chrX:19930841-19930543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
163-466
               

               
Cow position:
               
chrX:917181-917477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 173
               

               
Conread position:
               
163-466
               

               
Cow position:
               
chrX:1503525-1503225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
163-466
               

               
Cow position:
               
chrX:10302535-10302225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
163-466
               

               
Cow position:
               
chrX:39415172-39415480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
163-466
               

               
Cow position:
               
chrX:42011479-42011170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
56, 182
               

               
Conread position:
               
163-469
               

               
Cow position:
               
chrX:17662403-17662709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
61, 134
               

               
Conread position:
               
163-471
               

               
Cow position:
               
chrX:4825630-4825943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
56, 189
               

               
Conread position:
               
163-471
               

               
Cow position:
               
chrX:7646454-7646138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
56, 188
               

               
Conread position:
               
163-471
               

               
Cow position:
               
chrX:22624678-22624366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
59, 192
               

               
Conread position:
               
163-471
               

               
Cow position:
               
chrX:40692554-40692869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
68, 53
               

               
Conread position:
               
163-473
               

               
Cow position:
               
chrX:32431817-32431502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
163-473
               

               
Cow position:
               
chrX:39558165-39558472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
163-475
               

               
Cow position:
               
chrX:23497479-23497792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
68, 55
               

               
Conread position:
               
163-475
               

               
Cow position:
               
chrX:30420749-30421056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 160
               

               
Conread position:
               
163-477
               

               
Cow position:
               
chrX:755161-754833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
67, 111
               

               
Conread position:
               
163-477
               

               
Cow position:
               
chrX:38936869-38936575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
134, 49
               

               
Conread position:
               
164-346
               

               
Cow position:
               
chrX:38722314-38722125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
164-405
               

               
Cow position:
               
chrX:43426487-43426240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
164-461
               

               
Cow position:
               
chrX:15329839-15329542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 185
               

               
Conread position:
               
164-464
               

               
Cow position:
               
chrX:16514078-16514374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 78
               

               
Conread position:
               
164-464
               

               
Cow position:
               
chrX:40789400-40789097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 85
               

               
Conread position:
               
164-465
               

               
Cow position:
               
chrX:29121238-29120934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 181
               

               
Conread position:
               
164-471
               

               
Cow position:
               
chrX:6234268-6234571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
104, 19
               

               
Conread position:
               
164-471
               

               
Cow position:
               
chrX:20584529-20584206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
55, 188
               

               
Conread position:
               
164-475
               

               
Cow position:
               
chrX:14973540-14973863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
55, 161
               

               
Conread position:
               
164-475
               

               
Cow position:
               
chrX:25713992-25713670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 54
               

               
Conread position:
               
165-405
               

               
Cow position:
               
chrX:29407828-29408077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
165-435
               

               
Cow position:
               
chrX:15233072-15233347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 44
               

               
Conread position:
               
165-440
               

               
Cow position:
               
chrX:2468065-2467798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
145, 50
               

               
Conread position:
               
165-467
               

               
Cow position:
               
chrX:43779649-43779961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 196
               

               
Conread position:
               
165-467
               

               
Cow position:
               
chrX:46072614-46072934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 184
               

               
Conread position:
               
165-471
               

               
Cow position:
               
chrX:1615842-1616162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 158
               

               
Conread position:
               
165-473
               

               
Cow position:
               
chrX:29761488-29761809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
52, 188
               

               
Conread position:
               
166-401
               

               
Cow position:
               
chrX:13359253-13359467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
143, 41
               

               
Conread position:
               
166-460
               

               
Cow position:
               
chrX:10959201-10959504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
86, 181
               

               
Conread position:
               
166-475
               

               
Cow position:
               
chrX:28930030-28929713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
167-423
               

               
Cow position:
               
chrX:2003690-2003946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
167-465
               

               
Cow position:
               
chrX:37119789-37119483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
169-465
               

               
Cow position:
               
chrX:31340902-31340596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
48, 182
               

               
Conread position:
               
169-466
               

               
Cow position:
               
chrX:39126515-39126220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
169-471
               

               
Cow position:
               
chrX:1499866-1499547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
50, 186
               

               
Conread position:
               
170-392
               

               
Cow position:
               
chrX:35759745-35759978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 176
               

               
Conread position:
               
170-469
               

               
Cow position:
               
chrX:33855037-33855349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
172-430
               

               
Cow position:
               
chrX:4515872-4515606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
175-451
               

               
Cow position:
               
chrX:45968327-45968061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
175-465
               

               
Cow position:
               
chrX:12249996-12249691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 221
               

               
Conread position:
               
183-475
               

               
Cow position:
               
chrX:13853802-13853500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
184-398
               

               
Cow position:
               
chrX:7806601-7806378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
42, 165
               

               
Conread position:
               
187-454
               

               
Cow position:
               
chrX:20801937-20801673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 158
               

               
Conread position:
               
187-466
               

               
Cow position:
               
chrX:17630627-17630916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
32, 166
               

               
Conread position:
               
187-474
               

               
Cow position:
               
chrX:30163168-30162870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
190-471
               

               
Cow position:
               
chrX:7497409-7497125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
196-403
               

               
Cow position:
               
chrX:42498899-42499099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chrX:18694778-18695047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
198-475
               

               
Cow position:
               
chrX:44961902-44961624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
200-466
               

               
Cow position:
               
chrX:38654282-38654543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
109, 12
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chrX:31294422-31294675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 132
               

               
Conread position:
               
205-465
               

               
Cow position:
               
chrX:26493490-26493749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
207-439
               

               
Cow position:
               
chrX:6559305-6559532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
58, 5
               

               
Conread position:
               
208-464
               

               
Cow position:
               
chrX:29194372-29194123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
208-471
               

               
Cow position:
               
chrX:4865382-4865127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
209-464
               

               
Cow position:
               
chrX:43568059-43567811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
100, 7
               

               
Conread position:
               
209-475
               

               
Cow position:
               
chrX:34315662-34315403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 133
               

               
Conread position:
               
210-432
               

               
Cow position:
               
chrX:39220219-39220000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
99, 132
               

               
Conread position:
               
210-440
               

               
Cow position:
               
chrX:47054385-47054615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
212-388
               

               
Cow position:
               
chrX:17956828-17956660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
97, 63
               

               
Conread position:
               
212-464
               

               
Cow position:
               
chrX:8797387-8797141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
157, 89
               

               
Conread position:
               
212-466
               

               
Cow position:
               
chrX:42994737-42994503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
109, 34
               

               
Conread position:
               
212-471
               

               
Cow position:
               
chrX:42171159-42171414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
97, 16
               

               
Conread position:
               
212-473
               

               
Cow position:
               
chrX:5679793-5680055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
123, 90
               

               
Conread position:
               
213-384
               

               
Cow position:
               
chrX:23498543-23498709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
96, 75
               

               
Conread position:
               
213-395
               

               
Cow position:
               
chrX:29553422-29553243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 124
               

               
Conread position:
               
213-402
               

               
Cow position:
               
chrX:19943099-19943286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
213-405
               

               
Cow position:
               
chrX:18964692-18964876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
213-406
               

               
Cow position:
               
chrX:20887503-20887698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
213-410
               

               
Cow position:
               
chrX:31626841-31627038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
96, 71
               

               
Conread position:
               
213-411
               

               
Cow position:
               
chrX:22914905-22915094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
213-413
               

               
Cow position:
               
chrX:27511565-27511367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
213-415
               

               
Cow position:
               
chrX:19097082-19097284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 61
               

               
Conread position:
               
213-416
               

               
Cow position:
               
chrX:126904-126706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
107, 92
               

               
Conread position:
               
213-416
               

               
Cow position:
               
chrX:6463735-6463548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
213-416
               

               
Cow position:
               
chrX:25037124-25036924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 127
               

               
Conread position:
               
213-437
               

               
Cow position:
               
chrX:41238218-41238436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
96, 77
               

               
Conread position:
               
213-438
               

               
Cow position:
               
chrX:23562769-23562549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
96, 124
               

               
Conread position:
               
213-439
               

               
Cow position:
               
chrX:36514755-36514981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 128
               

               
Conread position:
               
213-440
               

               
Cow position:
               
chrX:9252026-9252250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 133
               

               
Conread position:
               
213-440
               

               
Cow position:
               
chrX:40680751-40680523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
96, 129
               

               
Conread position:
               
213-443
               

               
Cow position:
               
chrX:27261329-27261097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-443
               

               
Cow position:
               
chrX:27705723-27705496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
213-443
               

               
Cow position:
               
chrX:29050385-29050156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 89
               

               
Conread position:
               
213-443
               

               
Cow position:
               
chrX:42873522-42873303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
213-444
               

               
Cow position:
               
chrX:1466299-1466069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 121
               

               
Conread position:
               
213-444
               

               
Cow position:
               
chrX:37129406-37129177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-445
               

               
Cow position:
               
chrX:31250525-31250293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
213-446
               

               
Cow position:
               
chrX:20168694-20168464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
213-448
               

               
Cow position:
               
chrX:29549414-29549644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
213-454
               

               
Cow position:
               
chrX:16348435-16348672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
213-454
               

               
Cow position:
               
chrX:34411983-34411740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 96
               

               
Conread position:
               
213-459
               

               
Cow position:
               
chrX:169409-169646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
213-463
               

               
Cow position:
               
chrX:42855595-42855344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
96, 138
               

               
Conread position:
               
213-464
               

               
Cow position:
               
chrX:11614830-11614588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
213-464
               

               
Cow position:
               
chrX:45502283-45502041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chrX:6278361-6278614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chrX:9416547-9416805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chrX:15147060-15147301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
91, 95
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chrX:32420349-32420107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 116
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chrX:42235387-42235640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:9201685-9201437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
94, 107
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:11717646-11717897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
96, 139
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:20697472-20697719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:27175135-27174882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:29601691-29601943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 123
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:33466761-33466498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:33640112-33639858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
122, 93
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:34565420-34565170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:34792176-34792421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:35885590-35885843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chrX:41027296-41027044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
213-467
               

               
Cow position:
               
chrX:17888286-17888528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 82
               

               
Conread position:
               
213-467
               

               
Cow position:
               
chrX:31489657-31489407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
96, 119
               

               
Conread position:
               
213-467
               

               
Cow position:
               
chrX:41123196-41122953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
108, 94
               

               
Conread position:
               
213-469
               

               
Cow position:
               
chrX:5872454-5872201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:5679435-5679684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
101, 77
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:9365539-9365793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 118
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:11084928-11085175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:12309249-12309503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:12979697-12979945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 97
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:13647648-13647903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:14599669-14599415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:17726113-17725856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
10, 97
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:18204326-18204581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:22387113-22387361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:27228264-27228005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 127
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:27771831-27772079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 61
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:29680124-29680378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 119
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:30543147-30543405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 124
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:31252544-31252300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
204, 46
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:31312166-31311911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
94, 129
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:32821165-32820910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
96, 91
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:34238858-34238602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 129
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:34402143-34401880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:34503057-34502804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:35543024-35542777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 88
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:36356242-36355997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:36976088-36975831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:37489855-37489608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
96, 25
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:37780972-37781229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
89, 96
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:38006634-38006882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 18
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:38094383-38094641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
91, 96
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:38549584-38549334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
100, 125
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:38728871-38728619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
96, 119
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:40685191-40685449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
96, 134
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:42492387-42492633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:46433628-46433368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-472
               

               
Cow position:
               
chrX:13382462-13382210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
213-472
               

               
Cow position:
               
chrX:27393889-27394138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
96, 124
               

               
Conread position:
               
213-473
               

               
Cow position:
               
chrX:45113758-45113495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-474
               

               
Cow position:
               
chrX:6690123-6690379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
96, 123
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chrX:878243-878502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 130
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chrX:5017285-5017541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
211, 37
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chrX:33001043-33000780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
9, 127
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chrX:37910581-37910324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 8
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chrX:40035303-40035567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
213-475
               

               
Cow position:
               
chrX:42247045-42247307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
213-477
               

               
Cow position:
               
chrX:152037-151775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
213-477
               

               
Cow position:
               
chrX:6407680-6407423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
213-477
               

               
Cow position:
               
chrX:8869264-8869527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
5, 135
               

               
Conread position:
               
213-477
               

               
Cow position:
               
chrX:11633819-11633553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
96, 119
               

               
Conread position:
               
214-409
               

               
Cow position:
               
chrX:32977950-32978133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
214-465
               

               
Cow position:
               
chrX:11082486-11082726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
95, 126
               

               
Conread position:
               
214-466
               

               
Cow position:
               
chrX:7351433-7351186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
96, 75
               

               
Conread position:
               
214-471
               

               
Cow position:
               
chrX:7695884-7695630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
214-475
               

               
Cow position:
               
chrX:41068861-41068599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
95, 123
               

               
Conread position:
               
215-471
               

               
Cow position:
               
chrX:6488709-6488458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
215-471
               

               
Cow position:
               
chrX:15007015-15007268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
215-477
               

               
Cow position:
               
chrX:9635056-9635306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
94, 75
               

               
Conread position:
               
215-477
               

               
Cow position:
               
chrX:38218851-38218586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 129
               

               
Conread position:
               
216-460
               

               
Cow position:
               
chrX:43730090-43730325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
93, 117
               

               
Conread position:
               
216-465
               

               
Cow position:
               
chrX:44054936-44054690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 116
               

               
Conread position:
               
216-466
               

               
Cow position:
               
chrX:7710405-7710656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
93, 116
               

               
Conread position:
               
216-466
               

               
Cow position:
               
chrX:20151990-20151733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
93, 74
               

               
Conread position:
               
217-454
               

               
Cow position:
               
chrX:45875524-45875289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
218-465
               

               
Cow position:
               
chrX:6656514-6656274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
218-471
               

               
Cow position:
               
chrX:19003420-19003182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
103, 37
               

               
Conread position:
               
218-475
               

               
Cow position:
               
chrX:618866-619131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
7, 133
               

               
Conread position:
               
218-477
               

               
Cow position:
               
chrX:34222856-34222584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
219-409
               

               
Cow position:
               
chrX:32623700-32623511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
219-440
               

               
Cow position:
               
chrX:11454919-11455134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
90, 9
               

               
Conread position:
               
219-446
               

               
Cow position:
               
chrX:23113415-23113181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
219-451
               

               
Cow position:
               
chrX:31515304-31515070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
219-461
               

               
Cow position:
               
chrX:7278041-7277811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
219-466
               

               
Cow position:
               
chrX:33539300-33539052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
219-466
               

               
Cow position:
               
chrX:48236947-48236704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
135, 9
               

               
Conread position:
               
219-471
               

               
Cow position:
               
chrX:31729572-31729325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
219-477
               

               
Cow position:
               
chrX:35288785-35288529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
220-443
               

               
Cow position:
               
chrX:28134467-28134254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 9
               

               
Conread position:
               
220-464
               

               
Cow position:
               
chrX:47186197-47186432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
220-466
               

               
Cow position:
               
chrX:26881436-26881681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
220-471
               

               
Cow position:
               
chrX:1175850-1176097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
220-471
               

               
Cow position:
               
chrX:24287803-24288042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 118
               

               
Conread position:
               
221-420
               

               
Cow position:
               
chrX:23561986-23561794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
221-465
               

               
Cow position:
               
chrX:7572033-7571792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
221-466
               

               
Cow position:
               
chrX:16416638-16416397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
221-466
               

               
Cow position:
               
chrX:22074928-22074687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
221-466
               

               
Cow position:
               
chrX:44397137-44396906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
204, 7
               

               
Conread position:
               
221-466
               

               
Cow position:
               
chrX:45977055-45976807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 141
               

               
Conread position:
               
221-467
               

               
Cow position:
               
chrX:42469813-42470055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 7
               

               
Conread position:
               
221-470
               

               
Cow position:
               
chrX:35413739-35413503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
147, 74
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chrX:616131-616380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chrX:1514291-1514525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
203, 7
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chrX:19690343-19690103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chrX:27431790-27432032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chrX:38853325-38853080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chrX:41674233-41673990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
88, 98
               

               
Conread position:
               
221-473
               

               
Cow position:
               
chrX:4768860-4768624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
221-475
               

               
Cow position:
               
chrX:34314152-34313906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 7
               

               
Conread position:
               
221-475
               

               
Cow position:
               
chrX:36068143-36067890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
221-475
               

               
Cow position:
               
chrX:40557551-40557808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
221-477
               

               
Cow position:
               
chrX:41270858-41271116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
221-477
               

               
Cow position:
               
chrX:41884284-41884543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
221-477
               

               
Cow position:
               
chrX:45670350-45670101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
57, 7
               

               
Conread position:
               
221-477
               

               
Cow position:
               
chrX:46587950-46587690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
228-420
               

               
Cow position:
               
chrX:15820716-15820530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 49
               

               
Conread position:
               
228-466
               

               
Cow position:
               
chrX:32310228-32309996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 110
               

               
Conread position:
               
228-471
               

               
Cow position:
               
chrX:7162178-7161942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
81, 60
               

               
Conread position:
               
228-471
               

               
Cow position:
               
chrX:29542095-29542337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 104
               

               
Conread position:
               
228-471
               

               
Cow position:
               
chrX:41871189-41870955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
79, 109
               

               
Conread position:
               
229-443
               

               
Cow position:
               
chrX:43527629-43527419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
85, 111
               

               
Conread position:
               
229-444
               

               
Cow position:
               
chrX:161533-161321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
229-456
               

               
Cow position:
               
chrX:19162220-19162444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
132, 73
               

               
Conread position:
               
229-475
               

               
Cow position:
               
chrX:4043746-4043974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
230-448
               

               
Cow position:
               
chrX:12095652-12095870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
79, 104
               

               
Conread position:
               
230-465
               

               
Cow position:
               
chrX:40480746-40480981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
230-466
               

               
Cow position:
               
chrX:27516639-27516415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
107, 29
               

               
Conread position:
               
230-470
               

               
Cow position:
               
chrX:45598485-45598717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
77, 102
               

               
Conread position:
               
231-454
               

               
Cow position:
               
chrX:47967726-47967496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 108
               

               
Conread position:
               
237-466
               

               
Cow position:
               
chrX:37955960-37955720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
72, 179
               

               
Conread position:
               
237-470
               

               
Cow position:
               
chrX:41878821-41879049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
68, 72
               

               
Conread position:
               
238-410
               

               
Cow position:
               
chrX:40108406-40108573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
63, 98
               

               
Conread position:
               
238-444
               

               
Cow position:
               
chrX:46532383-46532592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 94
               

               
Conread position:
               
238-452
               

               
Cow position:
               
chrX:48044403-48044614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 51
               

               
Conread position:
               
238-453
               

               
Cow position:
               
chrX:45403713-45403931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 95
               

               
Conread position:
               
238-454
               

               
Cow position:
               
chrX:48570876-48571097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
72, 101
               

               
Conread position:
               
238-464
               

               
Cow position:
               
chrX:44656845-44657074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 104
               

               
Conread position:
               
238-465
               

               
Cow position:
               
chrX:30133206-30133434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
71, 96
               

               
Conread position:
               
238-466
               

               
Cow position:
               
chrX:3154131-3154357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
238-466
               

               
Cow position:
               
chrX:9650912-9651138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 72
               

               
Conread position:
               
238-466
               

               
Cow position:
               
chrX:20339782-20340001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
238-466
               

               
Cow position:
               
chrX:21566519-21566289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
71, 97
               

               
Conread position:
               
238-471
               

               
Cow position:
               
chrX:5118386-5118620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 109
               

               
Conread position:
               
238-471
               

               
Cow position:
               
chrX:7722100-7721871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
75, 51
               

               
Conread position:
               
238-471
               

               
Cow position:
               
chrX:23513905-23514133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
83, 70
               

               
Conread position:
               
238-471
               

               
Cow position:
               
chrX:34543896-34543668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 99
               

               
Conread position:
               
238-475
               

               
Cow position:
               
chrX:2786445-2786676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
239-456
               

               
Cow position:
               
chrX:10516364-10516152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
70, 104
               

               
Conread position:
               
239-471
               

               
Cow position:
               
chrX:37836689-37836470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 39
               

               
Conread position:
               
240-464
               

               
Cow position:
               
chrX:34441344-34441563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
69, 80
               

               
Conread position:
               
240-465
               

               
Cow position:
               
chrX:26625561-26625782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 100
               

               
Conread position:
               
240-471
               

               
Cow position:
               
chrX:31260504-31260744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
39, 96
               

               
Conread position:
               
240-475
               

               
Cow position:
               
chrX:29032520-29032285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
240-477
               

               
Cow position:
               
chrX:8731203-8730962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
241-477
               

               
Cow position:
               
chrX:3488782-3489018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
183, 96
               

               
Conread position:
               
243-466
               

               
Cow position:
               
chrX:21672667-21672442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
75, 95
               

               
Conread position:
               
243-470
               

               
Cow position:
               
chrX:45846208-45845982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 72
               

               
Conread position:
               
243-471
               

               
Cow position:
               
chrX:13913182-13912961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 158
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chrX:40269599-40269369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
243-474
               

               
Cow position:
               
chrX:35224403-35224177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 67
               

               
Conread position:
               
244-465
               

               
Cow position:
               
chrX:27680504-27680287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
65, 96
               

               
Conread position:
               
247-431
               

               
Cow position:
               
chrX:36866276-36866092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
62, 85
               

               
Conread position:
               
247-441
               

               
Cow position:
               
chrX:13868805-13868615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
247-452
               

               
Cow position:
               
chrX:25440895-25441091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 95
               

               
Conread position:
               
247-459
               

               
Cow position:
               
chrX:1055278-1055499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 184
               

               
Conread position:
               
247-465
               

               
Cow position:
               
chrX:31436577-31436366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
247-466
               

               
Cow position:
               
chrX:29289681-29289467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
62, 93
               

               
Conread position:
               
247-471
               

               
Cow position:
               
chrX:45633659-45633446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
247-475
               

               
Cow position:
               
chrX:35926059-35925836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
248-459
               

               
Cow position:
               
chrX:36061262-36061049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
62, 91
               

               
Conread position:
               
248-460
               

               
Cow position:
               
chrX:40826649-40826862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 98
               

               
Conread position:
               
248-471
               

               
Cow position:
               
chrX:14900631-14900840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
72, 58
               

               
Conread position:
               
248-471
               

               
Cow position:
               
chrX:40320508-40320287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
248-472
               

               
Cow position:
               
chrX:22921423-22921197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
249-466
               

               
Cow position:
               
chrX:27685350-27685134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
250-453
               

               
Cow position:
               
chrX:21328013-21327802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
63, 109
               

               
Conread position:
               
250-459
               

               
Cow position:
               
chrX:22813162-22812958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
170, 53
               

               
Conread position:
               
250-460
               

               
Cow position:
               
chrX:23563691-23563900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 89
               

               
Conread position:
               
250-471
               

               
Cow position:
               
chrX:16541557-16541792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 220
               

               
Conread position:
               
250-471
               

               
Cow position:
               
chrX:21593381-21593169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
250-471
               

               
Cow position:
               
chrX:25815801-25816018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 100
               

               
Conread position:
               
250-475
               

               
Cow position:
               
chrX:45993330-45993096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
250-477
               

               
Cow position:
               
chrX:21642382-21642603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
252-466
               

               
Cow position:
               
chrX:6265501-6265710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
252-471
               

               
Cow position:
               
chrX:15815182-15814969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
57, 88
               

               
Conread position:
               
252-471
               

               
Cow position:
               
chrX:26440687-26440897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
64, 56
               

               
Conread position:
               
254-471
               

               
Cow position:
               
chrX:3654704-3654490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
56, 86
               

               
Conread position:
               
256-477
               

               
Cow position:
               
chrX:24365727-24365952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 102
               

               
Conread position:
               
259-459
               

               
Cow position:
               
chrX:17231826-17231625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
51, 80
               

               
Conread position:
               
259-464
               

               
Cow position:
               
chrX:17949402-17949601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 60
               

               
Conread position:
               
259-472
               

               
Cow position:
               
chrX:11844150-11844366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
51, 147
               

               
Conread position:
               
259-473
               

               
Cow position:
               
chrX:34662755-34662970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
50, 70
               

               
Conread position:
               
264-465
               

               
Cow position:
               
chrX:44873475-44873673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
264-471
               

               
Cow position:
               
chrX:10831401-10831611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
264-471
               

               
Cow position:
               
chrX:12405295-12405505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
45, 75
               

               
Conread position:
               
264-471
               

               
Cow position:
               
chrX:27945968-27946177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
265-418
               

               
Cow position:
               
chrX:43973630-43973479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 71
               

               
Conread position:
               
265-475
               

               
Cow position:
               
chrX:4399211-4399002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
265-475
               

               
Cow position:
               
chrX:13265542-13265747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 72
               

               
Conread position:
               
266-471
               

               
Cow position:
               
chrX:20710158-20709957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
267-471
               

               
Cow position:
               
chrX:13785280-13785481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
269-475
               

               
Cow position:
               
chrX:22466037-22465826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 166
               

               
Conread position:
               
271-466
               

               
Cow position:
               
chrX:11589509-11589701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
271-466
               

               
Cow position:
               
chrX:27449919-27450112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
277-471
               

               
Cow position:
               
chrX:41743987-41743793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
279-475
               

               
Cow position:
               
chrX:1810089-1810286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
280-467
               

               
Cow position:
               
chrX:20790983-20790807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
144, 57
               

               
Conread position:
               
281-471
               

               
Cow position:
               
chrX:26875812-26876001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
283-465
               

               
Cow position:
               
chrX:40116484-40116309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
285-465
               

               
Cow position:
               
chrX:42461681-42461856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
285-475
               

               
Cow position:
               
chrX:19188996-19188813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
286-466
               

               
Cow position:
               
chrX:12018356-12018175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
287-461
               

               
Cow position:
               
chrX:25232656-25232482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
289-466
               

               
Cow position:
               
chrX:36961702-36961526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
290-466
               

               
Cow position:
               
chrX:41166902-41167078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
297-471
               

               
Cow position:
               
chrX:35681393-35681220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
297-475
               

               
Cow position:
               
chrX:28845884-28845708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
298-466
               

               
Cow position:
               
chrX:42875035-42874868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 42
               

               
Conread position:
               
308-471
               

               
Cow position:
               
chrX:40648027-40647869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
308-475
               

               
Cow position:
               
chrX:28835861-28836025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
308-477
               

               
Cow position:
               
chrX:17498126-17497961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
310-460
               

               
Cow position:
               
chrX:35848601-35848454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
312-454
               

               
Cow position:
               
chrX:38439518-38439376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
315-475
               

               
Cow position:
               
chrX:17908256-17908408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
318-445
               

               
Cow position:
               
chrX:22376683-22376560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
330-471
               

               
Cow position:
               
chrX:35284644-35284501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
20, 8
               

               
Conread position:
               
337-464
               

               
Cow position:
               
chrX:10079434-10079560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
344-471
               

               
Cow position:
               
chrX:37048565-37048694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
17, 99
               

               
Conread position:
               
353-475
               

               
Cow position:
               
chrX:30832850-30832969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 5
               

               
Conread position:
               
364-466
               

               
Cow position:
               
chrX:32747673-32747570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
60, 93
               
Show alignments to all cow chromosomes.