Cow genome map

Conread name: Emb1-C0005183_C04

Conread position: 1-119
Cow position: chr10:53934793-53934677 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 1-130
Cow position: chr10:13586655-13586790 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 1-137
Cow position: chr10:65132896-65133037 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 76

Conread position: 1-205
Cow position: chr10:13315890-13316102 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 28, 141

Conread position: 1-236
Cow position: chr10:56180515-56180757 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 165
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 27, 203

Conread position: 2-112
Cow position: chr10:24151934-24151822 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 2-121
Cow position: chr10:42745870-42745995 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 2-128
Cow position: chr10:48741206-48741075 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 2-130
Cow position: chr10:39387408-39387539 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 29, 121

Conread position: 2-130
Cow position: chr10:50498570-50498438 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 2-130
Cow position: chr10:53364980-53365114 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 2-130
Cow position: chr10:65345522-65345387 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 2-136
Cow position: chr10:40420892-40420756 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 73

Conread position: 2-137
Cow position: chr10:15425006-15425143 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 2-137
Cow position: chr10:54948184-54948042 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 32, 10

Conread position: 2-139
Cow position: chr10:29279396-29279541 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 2-140
Cow position: chr10:26631361-26631502 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 85

Conread position: 2-148
Cow position: chr10:6436012-6436163 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 142

Conread position: 2-148
Cow position: chr10:19372384-19372235 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 29, 142

Conread position: 2-148
Cow position: chr10:64285842-64285692 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 27, 138

Conread position: 2-151
Cow position: chr10:59839332-59839180 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 17

Conread position: 2-153
Cow position: chr10:13927687-13927842 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 144

Conread position: 2-153
Cow position: chr10:23128034-23127878 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 145

Conread position: 2-154
Cow position: chr10:16986284-16986439 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 27, 136

Conread position: 2-154
Cow position: chr10:19895351-19895500 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 33, 47

Conread position: 2-154
Cow position: chr10:24871117-24871275 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 2-154
Cow position: chr10:29919886-29919729 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 29, 136

Conread position: 2-154
Cow position: chr10:47543035-47543185 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 2-154
Cow position: chr10:48316994-48316840 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 54

Conread position: 2-155
Cow position: chr10:18042132-18042292 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 2-155
Cow position: chr10:24375502-24375654 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 49

Conread position: 2-159
Cow position: chr10:10752036-10751878 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 27, 141

Conread position: 2-159
Cow position: chr10:15868204-15868364 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 143

Conread position: 2-159
Cow position: chr10:30121358-30121522 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 2-171
Cow position: chr10:62286509-62286684 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 133

Conread position: 2-176
Cow position: chr10:24903032-24902852 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 26, 140

Conread position: 2-177
Cow position: chr10:29526943-29526770 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 27, 58

Conread position: 2-185
Cow position: chr10:17766020-17765829 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 143

Conread position: 2-189
Cow position: chr10:31791306-31791111 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 172

Conread position: 2-191
Cow position: chr10:24022329-24022136 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 83

Conread position: 2-191
Cow position: chr10:39110058-39109869 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 31

Conread position: 2-201
Cow position: chr10:22396208-22396411 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 29, 63

Conread position: 2-203
Cow position: chr10:24732260-24732460 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 31

Conread position: 2-205
Cow position: chr10:13311689-13311887 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 18

Conread position: 2-205
Cow position: chr10:15318837-15319046 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 26, 134

Conread position: 2-205
Cow position: chr10:17175988-17176192 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 38, 51

Conread position: 2-205
Cow position: chr10:63883894-63884088 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 135

Conread position: 2-227
Cow position: chr10:47690340-47690566 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 26, 148

Conread position: 3-124
Cow position: chr10:57461310-57461437 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 3-130
Cow position: chr10:48898619-48898752 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 3-137
Cow position: chr10:705042-704903 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 28, 132

Conread position: 3-155
Cow position: chr10:24831130-24830969 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 26, 143

Conread position: 3-155
Cow position: chr10:33084483-33084329 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 3-166
Cow position: chr10:20132575-20132407 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 144

Conread position: 3-211
Cow position: chr10:25699603-25699810 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 26, 138

Conread position: 3-307
Cow position: chr10:22472278-22472589 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 26, 178

Conread position: 4-130
Cow position: chr10:32080229-32080358 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 56

Conread position: 4-137
Cow position: chr10:11221658-11221796 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 4-151
Cow position: chr10:6663988-6664140 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 134

Conread position: 4-153
Cow position: chr10:63628143-63628296 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 134

Conread position: 4-155
Cow position: chr10:4184150-4184306 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 143

Conread position: 4-164
Cow position: chr10:67581239-67581404 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 25, 143

Conread position: 4-176
Cow position: chr10:15224919-15225096 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 4-195
Cow position: chr10:28429549-28429354 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 134

Conread position: 4-216
Cow position: chr10:2849304-2849517 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 29, 73

Conread position: 4-221
Cow position: chr10:26209292-26209073 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 142

Conread position: 5-126
Cow position: chr10:40563347-40563465 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 5-152
Cow position: chr10:21082336-21082488 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 142

Conread position: 6-205
Cow position: chr10:50042564-50042761 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 29, 129

Conread position: 7-128
Cow position: chr10:1108506-1108379 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 8-155
Cow position: chr10:23379099-23379246 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 131, 11

Conread position: 18-223
Cow position: chr10:889937-890146 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 130, 163

Conread position: 27-130
Cow position: chr10:37709033-37708930 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 27-173
Cow position: chr10:9578976-9578833 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 113

Conread position: 27-178
Cow position: chr10:33371368-33371519 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 140, 145

Conread position: 27-205
Cow position: chr10:17388823-17388998 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 132, 82

Conread position: 27-240
Cow position: chr10:37785382-37785173 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 150, 89

Conread position: 28-179
Cow position: chr10:36947209-36947054 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 29-148
Cow position: chr10:17448213-17448096 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 106, 0

Conread position: 31-155
Cow position: chr10:6516685-6516808 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 108, 28

Conread position: 31-158
Cow position: chr10:13158100-13158229 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 31-194
Cow position: chr10:48500376-48500543 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 84, 49

Conread position: 31-194
Cow position: chr10:62277342-62277183 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 126, 0

Conread position: 32-198
Cow position: chr10:50200987-50201157 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 98

Conread position: 32-205
Cow position: chr10:2260133-2260300 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 92, 15

Conread position: 33-154
Cow position: chr10:7493611-7493489 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 106, 0

Conread position: 33-154
Cow position: chr10:52061810-52061930 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 106, 58

Conread position: 33-155
Cow position: chr10:64877721-64877600 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 34-217
Cow position: chr10:38241991-38241808 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 105, 95

Conread position: 34-241
Cow position: chr10:14538433-14538229 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 133, 92

Conread position: 38-172
Cow position: chr10:37442537-37442668 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 97, 0

Conread position: 38-179
Cow position: chr10:32986174-32986036 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 49

Conread position: 41-226
Cow position: chr10:668863-669051 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 46, 20

Show alignments to all cow chromosomes.