Cow genome map

Conread name: Emb1-C0005183_C04

Conread position: 1-130
Cow position: chr12:33976136-33976271 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 1-157
Cow position: chr12:41474026-41474187 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 146

Conread position: 1-177
Cow position: chr12:29779977-29779790 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 177

Conread position: 1-205
Cow position: chr12:7110134-7110337 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 141

Conread position: 2-130
Cow position: chr12:3615940-3616069 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 2-130
Cow position: chr12:34161352-34161485 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 2-130
Cow position: chr12:47804095-47804228 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 85

Conread position: 2-137
Cow position: chr12:24211351-24211487 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 31

Conread position: 2-138
Cow position: chr12:31429630-31429489 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 118
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 0

Conread position: 2-151
Cow position: chr12:26217887-26217731 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 2-151
Cow position: chr12:48415574-48415424 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 136

Conread position: 2-153
Cow position: chr12:6410797-6410638 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 2-153
Cow position: chr12:35368580-35368740 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 2-154
Cow position: chr12:4341806-4341649 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 140

Conread position: 2-154
Cow position: chr12:42966938-42967087 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 47

Conread position: 2-155
Cow position: chr12:6241257-6241415 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 145

Conread position: 2-155
Cow position: chr12:29675200-29675048 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 31, 139

Conread position: 2-155
Cow position: chr12:29966045-29966196 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 56

Conread position: 2-155
Cow position: chr12:30919363-30919521 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 32, 145

Conread position: 2-155
Cow position: chr12:33323558-33323399 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 141

Conread position: 2-155
Cow position: chr12:35771083-35770925 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 145

Conread position: 2-155
Cow position: chr12:41159528-41159683 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 58

Conread position: 2-174
Cow position: chr12:18572568-18572739 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 170, 117

Conread position: 2-175
Cow position: chr12:4793135-4793316 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 31, 140

Conread position: 2-191
Cow position: chr12:4797238-4797433 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 27, 136

Conread position: 2-198
Cow position: chr12:46120896-46120693 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 148

Conread position: 2-205
Cow position: chr12:7000665-7000454 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 84

Conread position: 2-205
Cow position: chr12:23764432-23764628 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 59, 31

Conread position: 2-205
Cow position: chr12:42698297-42698104 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 2-214
Cow position: chr12:45168081-45167867 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 27, 117

Conread position: 2-218
Cow position: chr12:5800979-5801198 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 20, 145

Conread position: 2-223
Cow position: chr12:3880042-3879811 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 27, 184

Conread position: 3-130
Cow position: chr12:9229561-9229428 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 111
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 3-137
Cow position: chr12:3197208-3197347 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 66

Conread position: 3-137
Cow position: chr12:37008764-37008628 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 3-198
Cow position: chr12:3675588-3675391 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 107

Conread position: 4-142
Cow position: chr12:30210423-30210567 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 4-164
Cow position: chr12:23836271-23836437 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 52

Conread position: 4-191
Cow position: chr12:29969519-29969710 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 27, 152

Conread position: 5-128
Cow position: chr12:1889636-1889508 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 5-130
Cow position: chr12:31517230-31517099 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 5-155
Cow position: chr12:5635512-5635357 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 142

Conread position: 6-130
Cow position: chr12:27803108-27802978 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 6-154
Cow position: chr12:4866759-4866912 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 141

Conread position: 7-151
Cow position: chr12:29057332-29057483 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 7-154
Cow position: chr12:25441591-25441736 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 7-155
Cow position: chr12:42181186-42181033 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 22, 140

Conread position: 8-223
Cow position: chr12:7920186-7920405 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 154

Conread position: 18-151
Cow position: chr12:6958181-6958314 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 98, 15

Conread position: 19-130
Cow position: chr12:38804630-38804518 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 22-174
Cow position: chr12:40270100-40269950 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 145, 26

Conread position: 22-240
Cow position: chr12:6226180-6225958 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 117, 37

Conread position: 27-153
Cow position: chr12:30753689-30753813 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 27-155
Cow position: chr12:26357402-26357276 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 28-156
Cow position: chr12:1344715-1344843 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 28-179
Cow position: chr12:33319698-33319547 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 139, 113

Conread position: 29-177
Cow position: chr12:27572269-27572123 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 138, 107

Conread position: 30-148
Cow position: chr12:46103734-46103618 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 30-205
Cow position: chr12:18523539-18523718 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 17, 6

Conread position: 31-137
Cow position: chr12:43854867-43854972 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 31-154
Cow position: chr12:18996783-18996905 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 105, 0

Conread position: 31-166
Cow position: chr12:25456381-25456517 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 112

Conread position: 31-177
Cow position: chr12:32419398-32419255 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 99, 23

Conread position: 31-199
Cow position: chr12:42143133-42143304 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 109, 24

Conread position: 31-224
Cow position: chr12:28651086-28651281 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 136, 110

Conread position: 33-198
Cow position: chr12:25444889-25445060 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 134, 0

Conread position: 33-205
Cow position: chr12:27430481-27430649 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 133, 0

Conread position: 34-176
Cow position: chr12:23913036-23912893 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 5, 135

Conread position: 40-198
Cow position: chr12:22341228-22341382 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 41-139
Cow position: chr12:18130500-18130597 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 46-177
Cow position: chr12:15790046-15790175 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 46-224
Cow position: chr12:4962622-4962797 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 121, 93

Conread position: 76-176
Cow position: chr12:34459678-34459780 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 63, 0

Show alignments to all cow chromosomes.