Cow genome map
| Conread name: | Emb1-C0005183_C04 |
| Conread position: | 1-147 |
| Cow position: | chr13:34261244-34261088 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-148 |
| Cow position: | chr13:24110490-24110338 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 141 |
| Conread position: | 1-151 |
| Cow position: | chr13:11260276-11260130 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-155 |
| Cow position: | chr13:2414039-2413880 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 86 |
| Conread position: | 1-155 |
| Cow position: | chr13:6926527-6926367 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-155 |
| Cow position: | chr13:24230224-24230064 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-183 |
| Cow position: | chr13:37640598-37640416 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 127 |
| Conread position: | 2-110 |
| Cow position: | chr13:60389479-60389593 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-122 |
| Cow position: | chr13:17622297-17622172 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 2-125 |
| Cow position: | chr13:12207057-12206928 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 2-128 |
| Cow position: | chr13:49457690-49457561 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 2-130 |
| Cow position: | chr13:16020860-16020726 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 2-132 |
| Cow position: | chr13:9161931-9161791 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 5 |
| Conread position: | 2-137 |
| Cow position: | chr13:24753896-24753755 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-137 |
| Cow position: | chr13:40722698-40722839 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-149 |
| Cow position: | chr13:9246740-9246589 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 2-150 |
| Cow position: | chr13:56148532-56148377 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 27, 147 |
| Conread position: | 2-150 |
| Cow position: | chr13:56160435-56160590 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 27, 147 |
| Conread position: | 2-153 |
| Cow position: | chr13:8699728-8699884 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 140 |
| Conread position: | 2-153 |
| Cow position: | chr13:14576219-14576068 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 2-153 |
| Cow position: | chr13:51813927-51814079 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 2-153 |
| Cow position: | chr13:51821870-51822021 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 2-154 |
| Cow position: | chr13:1568929-1568780 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 128, 46 |
| Conread position: | 2-154 |
| Cow position: | chr13:18166741-18166584 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 136 |
| Conread position: | 2-154 |
| Cow position: | chr13:38872939-38873092 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 136 |
| Conread position: | 2-154 |
| Cow position: | chr13:62008116-62007959 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 145 |
| Conread position: | 2-155 |
| Cow position: | chr13:6974170-6974015 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 2-159 |
| Cow position: | chr13:16014822-16014656 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-176 |
| Cow position: | chr13:21283695-21283879 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 174 |
| Conread position: | 2-191 |
| Cow position: | chr13:13765794-13765609 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 2-197 |
| Cow position: | chr13:7076264-7076066 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 138 |
| Conread position: | 2-205 |
| Cow position: | chr13:9265821-9266029 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 11, 124 |
| Conread position: | 2-221 |
| Cow position: | chr13:42640391-42640172 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 2-222 |
| Cow position: | chr13:1042960-1043195 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-235 |
| Cow position: | chr13:19750724-19750482 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 205 |
| Conread position: | 3-128 |
| Cow position: | chr13:6079404-6079535 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-130 |
| Cow position: | chr13:25428216-25428348 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 3-130 |
| Cow position: | chr13:28683370-28683237 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 3-151 |
| Cow position: | chr13:44202009-44201862 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 127, 107 |
| Conread position: | 3-154 |
| Cow position: | chr13:37592938-37593093 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 142 |
| Conread position: | 3-155 |
| Cow position: | chr13:43919253-43919411 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 3-164 |
| Cow position: | chr13:43893314-43893482 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 3-190 |
| Cow position: | chr13:43829252-43829063 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 28, 135 |
| Conread position: | 3-203 |
| Cow position: | chr13:9117562-9117762 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 3-205 |
| Cow position: | chr13:185538-185324 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 206 |
| Conread position: | 3-206 |
| Cow position: | chr13:37381809-37381591 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 208 |
| Conread position: | 4-137 |
| Cow position: | chr13:15991224-15991363 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 4-151 |
| Cow position: | chr13:17837957-17837806 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 134 |
| Conread position: | 4-154 |
| Cow position: | chr13:7104661-7104507 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 25, 134 |
| Conread position: | 4-155 |
| Cow position: | chr13:17158869-17159029 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 4-155 |
| Cow position: | chr13:36771417-36771570 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 4-155 |
| Cow position: | chr13:52055585-52055739 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 25, 134 |
| Conread position: | 4-176 |
| Cow position: | chr13:25435116-25435294 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 175 |
| Conread position: | 4-177 |
| Cow position: | chr13:51116017-51116200 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 4-203 |
| Cow position: | chr13:39367970-39367765 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 147 |
| Conread position: | 4-205 |
| Cow position: | chr13:60974082-60973883 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 4-214 |
| Cow position: | chr13:40154723-40154933 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 4-218 |
| Cow position: | chr13:6183413-6183626 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 30, 143 |
| Conread position: | 5-137 |
| Cow position: | chr13:38012330-38012201 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 5-164 |
| Cow position: | chr13:39398655-39398492 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 7-205 |
| Cow position: | chr13:27419080-27419273 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 10-157 |
| Cow position: | chr13:17813464-17813322 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 27-130 |
| Cow position: | chr13:20839544-20839441 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-155 |
| Cow position: | chr13:8637676-8637547 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 120, 105 |
| Conread position: | 27-191 |
| Cow position: | chr13:3211527-3211365 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 119, 114 |
| Conread position: | 27-214 |
| Cow position: | chr13:37517199-37517380 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 112, 87 |
| Conread position: | 29-157 |
| Cow position: | chr13:21275835-21275710 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 29-222 |
| Cow position: | chr13:51940710-51940519 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 163, 112 |
| Conread position: | 31-152 |
| Cow position: | chr13:1075065-1075185 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 31-155 |
| Cow position: | chr13:28439383-28439260 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 31-182 |
| Cow position: | chr13:7663448-7663597 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 31-198 |
| Cow position: | chr13:20531500-20531671 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 31-198 |
| Cow position: | chr13:29631582-29631409 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 32-130 |
| Cow position: | chr13:11942206-11942304 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-176 |
| Cow position: | chr13:21193066-21192923 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 134, 108 |
| Conread position: | 35-165 |
| Cow position: | chr13:42017839-42017971 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 8 |
| Conread position: | 38-217 |
| Cow position: | chr13:15808733-15808562 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 145, 41 |
Show alignments to all cow chromosomes.