Cow genome map

Conread name: Emb1-C0005183_C04

Conread position: 1-130
Cow position: chr15:19950586-19950458 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 88, 0

Conread position: 1-147
Cow position: chr15:49922248-49922097 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 141

Conread position: 1-170
Cow position: chr15:20487089-20487263 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 30, 146

Conread position: 1-198
Cow position: chr15:23719369-23719575 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 1-227
Cow position: chr15:5726439-5726211 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 28, 145

Conread position: 2-128
Cow position: chr15:16603932-16603806 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 108
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 2-130
Cow position: chr15:794908-795043 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 2-130
Cow position: chr15:40537903-40538031 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 2-133
Cow position: chr15:662355-662492 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 2-136
Cow position: chr15:7192153-7192289 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 2-136
Cow position: chr15:10660441-10660582 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 6, 0

Conread position: 2-137
Cow position: chr15:21821811-21821952 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 2-150
Cow position: chr15:14176386-14176539 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 29, 140

Conread position: 2-150
Cow position: chr15:26158486-26158636 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 50

Conread position: 2-150
Cow position: chr15:31495111-31495263 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 27, 144

Conread position: 2-153
Cow position: chr15:31928783-31928941 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 127
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 2-155
Cow position: chr15:5683253-5683105 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 26, 84

Conread position: 2-155
Cow position: chr15:11995914-11996070 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 120

Conread position: 2-155
Cow position: chr15:16583583-16583735 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 29, 111

Conread position: 2-155
Cow position: chr15:22939212-22939370 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 29, 145

Conread position: 2-155
Cow position: chr15:27900398-27900555 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 139

Conread position: 2-155
Cow position: chr15:36388404-36388246 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 136

Conread position: 2-159
Cow position: chr15:5930006-5929848 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 29, 17

Conread position: 2-174
Cow position: chr15:6272777-6272950 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 26, 79

Conread position: 2-175
Cow position: chr15:12870751-12870932 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 173

Conread position: 2-176
Cow position: chr15:21389054-21389230 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 58

Conread position: 2-176
Cow position: chr15:22871722-22871547 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 89

Conread position: 2-176
Cow position: chr15:39316729-39316911 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 2-179
Cow position: chr15:14261146-14261327 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 29, 169

Conread position: 2-184
Cow position: chr15:29331113-29330932 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 139, 0

Conread position: 2-198
Cow position: chr15:50660737-50660530 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 26, 175

Conread position: 2-201
Cow position: chr15:35440969-35441168 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 136

Conread position: 2-205
Cow position: chr15:2141190-2141400 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 27, 142

Conread position: 2-206
Cow position: chr15:34207081-34207283 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 165, 31

Conread position: 2-222
Cow position: chr15:33625064-33624839 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 128, 144

Conread position: 2-223
Cow position: chr15:22136796-22136571 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 154
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 136, 31

Conread position: 3-142
Cow position: chr15:14020597-14020451 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 3-151
Cow position: chr15:26919163-26919318 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 3-153
Cow position: chr15:34284298-34284454 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 145

Conread position: 3-155
Cow position: chr15:6128854-6129010 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 59

Conread position: 3-165
Cow position: chr15:35945641-35945470 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 112

Conread position: 3-194
Cow position: chr15:44280214-44280012 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 3-223
Cow position: chr15:29604588-29604814 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 130

Conread position: 4-150
Cow position: chr15:15154411-15154261 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 109

Conread position: 4-154
Cow position: chr15:48590134-48590288 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 25, 38

Conread position: 4-155
Cow position: chr15:31637412-31637253 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 4-155
Cow position: chr15:39621449-39621291 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 4-191
Cow position: chr15:51632952-51633137 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 22, 54

Conread position: 4-198
Cow position: chr15:21803550-21803737 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 48

Conread position: 4-198
Cow position: chr15:22984685-22984496 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 101

Conread position: 4-207
Cow position: chr15:31025103-31024894 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 30, 168

Conread position: 4-223
Cow position: chr15:286589-286376 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 138

Conread position: 5-130
Cow position: chr15:27973107-27973239 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 5-147
Cow position: chr15:26530000-26529851 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 5-190
Cow position: chr15:5567034-5566848 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 26, 81

Conread position: 6-140
Cow position: chr15:41582989-41582851 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 119

Conread position: 6-148
Cow position: chr15:5234892-5235035 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 137

Conread position: 6-154
Cow position: chr15:32977737-32977889 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 136

Conread position: 6-198
Cow position: chr15:18776642-18776843 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 7-207
Cow position: chr15:42190544-42190348 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 160, 17

Conread position: 22-179
Cow position: chr15:16911578-16911730 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 24-137
Cow position: chr15:12332559-12332445 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 106, 0

Conread position: 27-155
Cow position: chr15:20459226-20459353 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 0

Conread position: 27-165
Cow position: chr15:12357699-12357560 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 100, 116

Conread position: 27-184
Cow position: chr15:10431895-10431737 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 139, 0

Conread position: 28-152
Cow position: chr15:28823738-28823859 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 28-157
Cow position: chr15:4500784-4500656 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 29-137
Cow position: chr15:9497420-9497528 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-179
Cow position: chr15:42789068-42789219 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 110, 139

Conread position: 31-130
Cow position: chr15:40309469-40309371 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 31-147
Cow position: chr15:1297817-1297700 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 31-154
Cow position: chr15:52432421-52432299 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 31-171
Cow position: chr15:13554431-13554292 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 125, 101

Conread position: 33-130
Cow position: chr15:43599265-43599168 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-154
Cow position: chr15:4485230-4485107 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 101, 0

Conread position: 34-130
Cow position: chr15:23776546-23776642 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 5, 84

Conread position: 39-198
Cow position: chr15:33976625-33976790 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 43-198
Cow position: chr15:10074025-10073881 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 43-234
Cow position: chr15:23927816-23928005 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 136, 96

Show alignments to all cow chromosomes.