Cow genome map

Conread name: Emb1-C0005183_C04

Conread position: 1-117
Cow position: chr16:13648309-13648425 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 56

Conread position: 1-125
Cow position: chr16:8441831-8441702 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 1-130
Cow position: chr16:30037011-30036880 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 36, 32

Conread position: 1-130
Cow position: chr16:42433135-42433000 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 1-147
Cow position: chr16:9161059-9161210 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 142

Conread position: 1-147
Cow position: chr16:11359127-11359279 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 30, 137

Conread position: 1-148
Cow position: chr16:42752829-42752978 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 16

Conread position: 1-152
Cow position: chr16:50931542-50931392 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 97, 32

Conread position: 1-153
Cow position: chr16:15905274-15905117 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 146

Conread position: 1-155
Cow position: chr16:45044795-45044949 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr16:50282457-50282297 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 30, 147

Conread position: 1-190
Cow position: chr16:12501184-12500991 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 28, 78

Conread position: 1-191
Cow position: chr16:55968418-55968618 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 28, 92

Conread position: 1-198
Cow position: chr16:22842081-22841885 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 79

Conread position: 1-214
Cow position: chr16:24403452-24403228 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 46

Conread position: 2-129
Cow position: chr16:13712956-13712823 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 2-130
Cow position: chr16:18205937-18206070 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 2-130
Cow position: chr16:23738158-23738292 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 2-130
Cow position: chr16:39165217-39165350 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 2-130
Cow position: chr16:41530323-41530189 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 2-130
Cow position: chr16:42242140-42242007 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 84

Conread position: 2-130
Cow position: chr16:42340173-42340307 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 2-137
Cow position: chr16:12688129-12687994 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 114, 31

Conread position: 2-137
Cow position: chr16:21317616-21317475 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 2-137
Cow position: chr16:30359086-30358945 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 2-137
Cow position: chr16:51112901-51112762 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 2-137
Cow position: chr16:54226620-54226482 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 58

Conread position: 2-148
Cow position: chr16:12077502-12077359 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 37

Conread position: 2-148
Cow position: chr16:14754350-14754195 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 27, 149

Conread position: 2-149
Cow position: chr16:25380519-25380364 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 2-153
Cow position: chr16:17142911-17143072 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 2-154
Cow position: chr16:22738257-22738406 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 29, 116

Conread position: 2-154
Cow position: chr16:23955855-23955698 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 145

Conread position: 2-155
Cow position: chr16:10945461-10945302 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 125

Conread position: 2-155
Cow position: chr16:42444133-42444290 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 131

Conread position: 2-155
Cow position: chr16:50289129-50289285 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 112

Conread position: 2-155
Cow position: chr16:53086362-53086205 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 2-157
Cow position: chr16:16548590-16548746 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 91

Conread position: 2-158
Cow position: chr16:20633899-20633737 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 2-167
Cow position: chr16:15960313-15960143 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 27, 145

Conread position: 2-174
Cow position: chr16:7499035-7499201 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 13

Conread position: 2-176
Cow position: chr16:13414689-13414512 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 140

Conread position: 2-177
Cow position: chr16:20025421-20025600 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 27, 58

Conread position: 2-177
Cow position: chr16:22804620-22804442 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 26, 144

Conread position: 2-184
Cow position: chr16:43674850-43675037 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 141

Conread position: 2-185
Cow position: chr16:18353979-18353791 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 29, 170

Conread position: 2-205
Cow position: chr16:13611476-13611270 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 29, 5

Conread position: 2-205
Cow position: chr16:26030907-26030708 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 107

Conread position: 2-209
Cow position: chr16:7549945-7550158 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 27, 89

Conread position: 2-224
Cow position: chr16:17135704-17135925 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 26, 58

Conread position: 2-227
Cow position: chr16:8206097-8205888 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 214, 31

Conread position: 3-136
Cow position: chr16:27160886-27160747 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 3-142
Cow position: chr16:27723203-27723347 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 15

Conread position: 3-151
Cow position: chr16:820228-820385 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 26, 148

Conread position: 3-153
Cow position: chr16:11082976-11083130 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 94

Conread position: 3-155
Cow position: chr16:52133539-52133375 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 3-182
Cow position: chr16:35188231-35188410 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 76

Conread position: 3-206
Cow position: chr16:5415780-5415577 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 36, 143

Conread position: 3-214
Cow position: chr16:29026186-29026393 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 28, 57

Conread position: 4-128
Cow position: chr16:48493159-48493289 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 4-130
Cow position: chr16:18757858-18757728 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 4-130
Cow position: chr16:19670374-19670242 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 4-130
Cow position: chr16:46627856-46627726 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 0

Conread position: 4-137
Cow position: chr16:29655304-29655443 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 4-153
Cow position: chr16:9958808-9958963 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 4-153
Cow position: chr16:49229781-49229636 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 135, 15

Conread position: 4-155
Cow position: chr16:12097620-12097776 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 25, 143

Conread position: 4-177
Cow position: chr16:55592543-55592720 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 24, 64

Conread position: 4-198
Cow position: chr16:56875684-56875484 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 124

Conread position: 4-199
Cow position: chr16:43276001-43276192 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 130

Conread position: 4-205
Cow position: chr16:8273859-8273647 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 134

Conread position: 4-223
Cow position: chr16:43105536-43105315 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 75

Conread position: 5-137
Cow position: chr16:26372969-26372832 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 62

Conread position: 5-148
Cow position: chr16:29095907-29096050 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 5-153
Cow position: chr16:11957598-11957444 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 143

Conread position: 5-153
Cow position: chr16:45785717-45785870 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 142

Conread position: 6-198
Cow position: chr16:48448704-48448903 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 23, 96

Conread position: 9-214
Cow position: chr16:33869781-33869570 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 130

Conread position: 10-137
Cow position: chr16:51697076-51697203 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 10-177
Cow position: chr16:5726927-5727088 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 129, 10

Conread position: 15-165
Cow position: chr16:45535204-45535352 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 15-205
Cow position: chr16:12091667-12091484 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 88, 115

Conread position: 15-205
Cow position: chr16:15203371-15203188 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 152, 16

Conread position: 26-159
Cow position: chr16:15953811-15953680 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 27-147
Cow position: chr16:55945132-55945012 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 102, 115

Conread position: 27-148
Cow position: chr16:22824826-22824705 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-175
Cow position: chr16:41689701-41689846 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 117, 0

Conread position: 28-153
Cow position: chr16:56579918-56580041 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 28-190
Cow position: chr16:52803948-52803783 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 9, 116

Conread position: 29-170
Cow position: chr16:20265553-20265410 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 29-176
Cow position: chr16:496366-496221 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 0

Conread position: 29-177
Cow position: chr16:3114549-3114697 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 138, 112

Conread position: 29-242
Cow position: chr16:39416825-39416613 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 138, 175

Conread position: 31-137
Cow position: chr16:4102819-4102713 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-140
Cow position: chr16:17474777-17474885 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 31-214
Cow position: chr16:12454776-12454593 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 108, 24

Conread position: 33-176
Cow position: chr16:52706062-52705912 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 33-307
Cow position: chr16:22327524-22327783 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 163, 99

Conread position: 34-177
Cow position: chr16:16280359-16280215 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 133

Conread position: 34-198
Cow position: chr16:11923014-11922843 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 5, 100

Conread position: 47-205
Cow position: chr16:43322877-43323028 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 95, 0

Show alignments to all cow chromosomes.