Cow genome map
| Conread name: | Emb1-C0005183_C04 |
| Conread position: | 1-148 |
| Cow position: | chr17:15684525-15684680 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-154 |
| Cow position: | chr17:3067843-3067685 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 1-155 |
| Cow position: | chr17:37816177-37816022 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 115 |
| Conread position: | 1-172 |
| Cow position: | chr17:5900385-5900556 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 144 |
| Conread position: | 1-189 |
| Cow position: | chr17:8079328-8079521 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 143 |
| Conread position: | 1-222 |
| Cow position: | chr17:12342465-12342242 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 2-130 |
| Cow position: | chr17:7760452-7760322 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 50 |
| Conread position: | 2-137 |
| Cow position: | chr17:38263473-38263331 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-142 |
| Cow position: | chr17:34836091-34835945 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-147 |
| Cow position: | chr17:1350467-1350619 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 2-147 |
| Cow position: | chr17:12219918-12219772 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 141 |
| Conread position: | 2-147 |
| Cow position: | chr17:36864647-36864797 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 142 |
| Conread position: | 2-148 |
| Cow position: | chr17:20848540-20848691 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 51 |
| Conread position: | 2-149 |
| Cow position: | chr17:25097479-25097623 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-151 |
| Cow position: | chr17:27303944-27303798 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-153 |
| Cow position: | chr17:21489606-21489451 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-154 |
| Cow position: | chr17:43957677-43957832 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 142 |
| Conread position: | 2-155 |
| Cow position: | chr17:20993020-20992870 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 131 |
| Conread position: | 2-155 |
| Cow position: | chr17:27203029-27202869 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-159 |
| Cow position: | chr17:5011855-5012015 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 142 |
| Conread position: | 2-165 |
| Cow position: | chr17:7590446-7590280 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 143 |
| Conread position: | 2-175 |
| Cow position: | chr17:28536762-28536940 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 112, 49 |
| Conread position: | 2-177 |
| Cow position: | chr17:28814476-28814293 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 171 |
| Conread position: | 2-178 |
| Cow position: | chr17:38833058-38833243 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 24, 147 |
| Conread position: | 2-194 |
| Cow position: | chr17:37129216-37129411 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 2-205 |
| Cow position: | chr17:17410310-17410508 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 143 |
| Conread position: | 2-222 |
| Cow position: | chr17:24077424-24077641 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 2-299 |
| Cow position: | chr17:10769494-10769200 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 139 |
| Conread position: | 3-151 |
| Cow position: | chr17:11832097-11831944 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 144 |
| Conread position: | 3-176 |
| Cow position: | chr17:21922616-21922436 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 145 |
| Conread position: | 3-198 |
| Cow position: | chr17:21738856-21738663 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 3-223 |
| Cow position: | chr17:6848815-6849047 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 26, 57 |
| Conread position: | 4-130 |
| Cow position: | chr17:2275489-2275621 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 4-130 |
| Cow position: | chr17:24580275-24580144 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 4-151 |
| Cow position: | chr17:9911779-9911928 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 56 |
| Conread position: | 4-198 |
| Cow position: | chr17:22057009-22056812 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 138 |
| Conread position: | 5-137 |
| Cow position: | chr17:9565327-9565458 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 5-153 |
| Cow position: | chr17:17180069-17180214 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 5-174 |
| Cow position: | chr17:10508407-10508244 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-174 |
| Cow position: | chr17:22074478-22074305 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 24, 142 |
| Conread position: | 5-179 |
| Cow position: | chr17:5719891-5720076 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 162 |
| Conread position: | 5-227 |
| Cow position: | chr17:31585432-31585673 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 210 |
| Conread position: | 6-151 |
| Cow position: | chr17:9056677-9056525 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-155 |
| Cow position: | chr17:27613248-27613393 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 7-133 |
| Cow position: | chr17:12091799-12091668 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 7-177 |
| Cow position: | chr17:37430483-37430309 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 7-214 |
| Cow position: | chr17:26802912-26802707 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 10-165 |
| Cow position: | chr17:20874428-20874582 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 10-192 |
| Cow position: | chr17:5743259-5743079 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 157, 19 |
| Conread position: | 18-205 |
| Cow position: | chr17:25491022-25490834 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 145, 121 |
| Conread position: | 23-205 |
| Cow position: | chr17:21788615-21788436 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 153, 109 |
| Conread position: | 27-154 |
| Cow position: | chr17:14025863-14025738 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 27-157 |
| Cow position: | chr17:19898938-19899068 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 29-155 |
| Cow position: | chr17:8723384-8723256 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 29-172 |
| Cow position: | chr17:34751355-34751215 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 29-177 |
| Cow position: | chr17:24554046-24554195 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 102, 139 |
| Conread position: | 29-205 |
| Cow position: | chr17:21335514-21335343 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 30-155 |
| Cow position: | chr17:9078170-9078047 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 31-130 |
| Cow position: | chr17:29292328-29292231 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 31-153 |
| Cow position: | chr17:26225079-26225202 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 31-205 |
| Cow position: | chr17:15702408-15702586 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 96, 36 |
| Conread position: | 31-232 |
| Cow position: | chr17:968936-969145 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 108, 38 |
| Conread position: | 38-179 |
| Cow position: | chr17:15340693-15340552 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 129, 103 |
| Conread position: | 39-130 |
| Cow position: | chr17:10650173-10650264 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 79 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-137 |
| Cow position: | chr17:10825541-10825638 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.