Cow genome map
| Conread name: | Emb1-C0005183_C04 |
| Conread position: | 1-137 |
| Cow position: | chr18:37023608-37023466 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-150 |
| Cow position: | chr18:24342785-24342944 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-154 |
| Cow position: | chr18:23821878-23821734 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1-155 |
| Cow position: | chr18:21768561-21768714 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 132 |
| Conread position: | 2-126 |
| Cow position: | chr18:38344752-38344879 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-130 |
| Cow position: | chr18:11377308-11377441 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 2-130 |
| Cow position: | chr18:31586427-31586298 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 2-130 |
| Cow position: | chr18:36264825-36264695 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-130 |
| Cow position: | chr18:56301836-56301969 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 2-139 |
| Cow position: | chr18:4624204-4624064 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-147 |
| Cow position: | chr18:24719256-24719408 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-148 |
| Cow position: | chr18:51691519-51691367 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-150 |
| Cow position: | chr18:5647756-5647911 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 2-150 |
| Cow position: | chr18:16997197-16997352 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-150 |
| Cow position: | chr18:19883475-19883631 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-153 |
| Cow position: | chr18:11867280-11867438 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 2-154 |
| Cow position: | chr18:52251914-52251759 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 2-155 |
| Cow position: | chr18:1954646-1954486 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 2-155 |
| Cow position: | chr18:4556223-4556071 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 2-155 |
| Cow position: | chr18:19787922-19788081 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 137 |
| Conread position: | 2-166 |
| Cow position: | chr18:23162836-23162997 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 2-178 |
| Cow position: | chr18:51392696-51392520 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 141 |
| Conread position: | 2-186 |
| Cow position: | chr18:19273153-19272967 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 138 |
| Conread position: | 2-190 |
| Cow position: | chr18:19896508-19896319 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 143 |
| Conread position: | 2-191 |
| Cow position: | chr18:4872015-4872200 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 71 |
| Conread position: | 2-193 |
| Cow position: | chr18:46072406-46072604 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 27, 136 |
| Conread position: | 2-195 |
| Cow position: | chr18:56191018-56190823 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 2-196 |
| Cow position: | chr18:21266449-21266652 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-205 |
| Cow position: | chr18:40759150-40759355 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 146 |
| Conread position: | 2-239 |
| Cow position: | chr18:43020459-43020218 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 29, 192 |
| Conread position: | 3-147 |
| Cow position: | chr18:50359276-50359425 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 141 |
| Conread position: | 3-148 |
| Cow position: | chr18:45558091-45558242 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 140 |
| Conread position: | 3-153 |
| Cow position: | chr18:11754077-11754233 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-155 |
| Cow position: | chr18:29474688-29474844 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 3-155 |
| Cow position: | chr18:51676145-51675989 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 3-157 |
| Cow position: | chr18:247745-247591 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 3-207 |
| Cow position: | chr18:2619269-2619059 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 28, 154 |
| Conread position: | 3-300 |
| Cow position: | chr18:4673252-4673562 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 31, 140 |
| Conread position: | 4-130 |
| Cow position: | chr18:10322751-10322883 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 4-133 |
| Cow position: | chr18:5072465-5072330 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-149 |
| Cow position: | chr18:17005205-17005356 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 4-153 |
| Cow position: | chr18:51643420-51643269 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 115 |
| Conread position: | 4-179 |
| Cow position: | chr18:21102827-21102649 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 140 |
| Conread position: | 4-190 |
| Cow position: | chr18:22214433-22214622 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 143 |
| Conread position: | 4-205 |
| Cow position: | chr18:5701194-5701398 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 5-130 |
| Cow position: | chr18:6075449-6075318 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 6-205 |
| Cow position: | chr18:35692803-35693009 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 16-155 |
| Cow position: | chr18:24508266-24508132 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 16-195 |
| Cow position: | chr18:49982694-49982869 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 165, 6 |
| Conread position: | 31-146 |
| Cow position: | chr18:47410521-47410635 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 31-155 |
| Cow position: | chr18:27109314-27109190 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-198 |
| Cow position: | chr18:10656416-10656586 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 111 |
| Conread position: | 33-233 |
| Cow position: | chr18:50612551-50612350 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 109, 139 |
| Conread position: | 34-175 |
| Cow position: | chr18:33606946-33607083 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 112, 5 |
| Conread position: | 56-205 |
| Cow position: | chr18:52245211-52245356 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.