Cow genome map

Conread name: Emb1-C0005183_C04

Conread position: 1-130
Cow position: chr19:9583252-9583387 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 1-130
Cow position: chr19:36245529-36245395 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 19, 60

Conread position: 1-137
Cow position: chr19:4503187-4503326 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 64

Conread position: 1-148
Cow position: chr19:22134185-22134036 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 59

Conread position: 1-155
Cow position: chr19:39385077-39384918 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 137

Conread position: 1-156
Cow position: chr19:37467097-37466938 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 141

Conread position: 1-170
Cow position: chr19:27348321-27348151 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 33, 63

Conread position: 1-198
Cow position: chr19:43373003-43373198 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 33, 141

Conread position: 1-216
Cow position: chr19:16659597-16659384 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 146, 30

Conread position: 2-121
Cow position: chr19:31595266-31595391 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 2-128
Cow position: chr19:46713602-46713733 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 120

Conread position: 2-130
Cow position: chr19:26976102-26975968 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 2-130
Cow position: chr19:56063464-56063330 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 2-132
Cow position: chr19:40449984-40450119 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 65

Conread position: 2-137
Cow position: chr19:25410877-25410741 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 2-142
Cow position: chr19:10971132-10970984 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 2-147
Cow position: chr19:21176776-21176626 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 127

Conread position: 2-147
Cow position: chr19:42694961-42695111 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 27, 108

Conread position: 2-151
Cow position: chr19:11194797-11194643 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 29, 145

Conread position: 2-152
Cow position: chr19:3216982-3217133 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 21, 108

Conread position: 2-152
Cow position: chr19:11424350-11424195 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 85

Conread position: 2-152
Cow position: chr19:25526249-25526404 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 140

Conread position: 2-152
Cow position: chr19:26167947-26167791 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 32, 146

Conread position: 2-152
Cow position: chr19:30471389-30471234 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 26, 140

Conread position: 2-153
Cow position: chr19:12698285-12698443 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 2-153
Cow position: chr19:15362735-15362575 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 141

Conread position: 2-153
Cow position: chr19:39649111-39648955 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 26, 66

Conread position: 2-153
Cow position: chr19:41695696-41695539 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 19, 146

Conread position: 2-154
Cow position: chr19:6516236-6516388 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 142

Conread position: 2-155
Cow position: chr19:2221110-2220952 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 140

Conread position: 2-155
Cow position: chr19:36845215-36845373 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 140

Conread position: 2-162
Cow position: chr19:52750793-52750625 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 162

Conread position: 2-167
Cow position: chr19:46094671-46094501 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 29, 145

Conread position: 2-175
Cow position: chr19:17273767-17273596 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 116, 31

Conread position: 2-179
Cow position: chr19:33237139-33237323 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 167

Conread position: 2-191
Cow position: chr19:33241541-33241346 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 145

Conread position: 2-191
Cow position: chr19:55175509-55175319 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 117, 131

Conread position: 2-198
Cow position: chr19:17795865-17796059 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 141

Conread position: 2-199
Cow position: chr19:10081040-10081239 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 136

Conread position: 2-221
Cow position: chr19:7404411-7404184 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 208

Conread position: 2-226
Cow position: chr19:50682477-50682246 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 27, 58

Conread position: 3-130
Cow position: chr19:23304522-23304391 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 3-149
Cow position: chr19:7637269-7637117 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 135

Conread position: 3-161
Cow position: chr19:6344040-6344202 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 90

Conread position: 3-207
Cow position: chr19:4800708-4800932 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 3-214
Cow position: chr19:42235994-42236210 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 24, 132

Conread position: 3-217
Cow position: chr19:7675200-7675420 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 145

Conread position: 4-130
Cow position: chr19:39622821-39622691 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 25, 69

Conread position: 4-152
Cow position: chr19:30241666-30241818 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 27, 15

Conread position: 4-180
Cow position: chr19:19919494-19919318 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 15

Conread position: 4-205
Cow position: chr19:14347984-14348182 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 29, 109

Conread position: 4-205
Cow position: chr19:54915725-54915517 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 200

Conread position: 5-148
Cow position: chr19:7741629-7741486 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 111, 137

Conread position: 5-205
Cow position: chr19:22449958-22449761 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 24, 107

Conread position: 6-154
Cow position: chr19:39254476-39254323 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 141

Conread position: 7-147
Cow position: chr19:39613188-39613050 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 123, 11

Conread position: 9-198
Cow position: chr19:17068836-17069025 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 134, 20

Conread position: 11-179
Cow position: chr19:29972277-29972108 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 30, 155

Conread position: 18-161
Cow position: chr19:38624957-38625098 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 27-159
Cow position: chr19:33931862-33931731 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 125, 109

Conread position: 27-198
Cow position: chr19:8034350-8034185 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 29-153
Cow position: chr19:11816725-11816604 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 109, 0

Conread position: 31-155
Cow position: chr19:52356252-52356372 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 101, 0

Conread position: 31-178
Cow position: chr19:10287448-10287591 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 45, 107

Conread position: 32-130
Cow position: chr19:19748850-19748753 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 33-177
Cow position: chr19:9733564-9733418 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 103, 0

Conread position: 34-221
Cow position: chr19:29627387-29627210 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 93, 0

Conread position: 40-225
Cow position: chr19:4449776-4449959 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 99, 21

Conread position: 58-197
Cow position: chr19:11754562-11754414 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 73, 0

Show alignments to all cow chromosomes.