Cow genome map
| Conread name: | Emb1-C0005183_C04 |
| Conread position: | 1-153 |
| Cow position: | chr23:36200388-36200535 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-167 |
| Cow position: | chr23:25864722-25864551 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 28, 124 |
| Conread position: | 1-179 |
| Cow position: | chr23:3244491-3244305 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 2-122 |
| Cow position: | chr23:5316683-5316565 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-122 |
| Cow position: | chr23:20388672-20388546 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-130 |
| Cow position: | chr23:17484861-17484734 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 2-130 |
| Cow position: | chr23:29345785-29345656 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 31 |
| Conread position: | 2-134 |
| Cow position: | chr23:23409712-23409849 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 2-137 |
| Cow position: | chr23:14838766-14838625 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-142 |
| Cow position: | chr23:5603306-5603159 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-151 |
| Cow position: | chr23:15743070-15743222 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 2-153 |
| Cow position: | chr23:34356620-34356777 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 2-154 |
| Cow position: | chr23:13946017-13946173 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 2-154 |
| Cow position: | chr23:20435086-20434928 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 141 |
| Conread position: | 2-154 |
| Cow position: | chr23:38208705-38208862 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 2-155 |
| Cow position: | chr23:18402311-18402154 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 139 |
| Conread position: | 2-155 |
| Cow position: | chr23:26283703-26283859 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 2-155 |
| Cow position: | chr23:35503762-35503912 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 128, 32 |
| Conread position: | 2-174 |
| Cow position: | chr23:12334189-12334364 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 75 |
| Conread position: | 2-176 |
| Cow position: | chr23:10876377-10876555 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 2-176 |
| Cow position: | chr23:30950933-30951113 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 2-177 |
| Cow position: | chr23:38845581-38845757 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 139 |
| Conread position: | 2-205 |
| Cow position: | chr23:14164419-14164206 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 202 |
| Conread position: | 2-205 |
| Cow position: | chr23:38455200-38454993 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 27, 146 |
| Conread position: | 2-215 |
| Cow position: | chr23:39780733-39780950 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 145 |
| Conread position: | 2-225 |
| Cow position: | chr23:360711-360482 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 84 |
| Conread position: | 2-227 |
| Cow position: | chr23:36172497-36172728 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 27, 156 |
| Conread position: | 2-236 |
| Cow position: | chr23:30655831-30655604 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 3-130 |
| Cow position: | chr23:19774748-19774881 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-137 |
| Cow position: | chr23:14895694-14895554 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 4-148 |
| Cow position: | chr23:24704265-24704421 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 4-152 |
| Cow position: | chr23:14569520-14569367 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 26, 143 |
| Conread position: | 4-198 |
| Cow position: | chr23:1767809-1768015 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 140 |
| Conread position: | 4-227 |
| Cow position: | chr23:3835614-3835385 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 7-179 |
| Cow position: | chr23:27790001-27790173 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 10-198 |
| Cow position: | chr23:21336489-21336305 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 18-155 |
| Cow position: | chr23:1480642-1480776 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 23-157 |
| Cow position: | chr23:38033-38164 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 24-175 |
| Cow position: | chr23:23114066-23114214 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 25-130 |
| Cow position: | chr23:40122570-40122674 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 25-179 |
| Cow position: | chr23:27145134-27144985 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 8 |
| Conread position: | 27-133 |
| Cow position: | chr23:4054227-4054333 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-137 |
| Cow position: | chr23:16700032-16699922 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-137 |
| Cow position: | chr23:348937-348828 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-155 |
| Cow position: | chr23:13511734-13511862 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 115 |
| Conread position: | 31-137 |
| Cow position: | chr23:32040366-32040471 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 31-171 |
| Cow position: | chr23:4336083-4336220 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 135, 23 |
| Conread position: | 31-175 |
| Cow position: | chr23:1398025-1397881 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 135, 110 |
| Conread position: | 31-205 |
| Cow position: | chr23:9734424-9734590 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 31-205 |
| Cow position: | chr23:13674018-13673843 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 136, 105 |
| Conread position: | 31-220 |
| Cow position: | chr23:19273668-19273855 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 23 |
| Conread position: | 33-153 |
| Cow position: | chr23:21423783-21423902 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 35-153 |
| Cow position: | chr23:12405803-12405684 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 38-139 |
| Cow position: | chr23:22674401-22674301 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 38-147 |
| Cow position: | chr23:18417113-18417221 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 38-205 |
| Cow position: | chr23:26591890-26591725 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 39-199 |
| Cow position: | chr23:14739470-14739631 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 130 |
| Conread position: | 41-155 |
| Cow position: | chr23:769518-769406 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 44-198 |
| Cow position: | chr23:29972413-29972563 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 100 |
Show alignments to all cow chromosomes.