Cow genome map

Conread name: Emb1-C0005183_C04

Conread position: 1-130
Cow position: chr3:11229414-11229279 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 1-130
Cow position: chr3:18686857-18686992 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 1-139
Cow position: chr3:82386778-82386642 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 33, 54

Conread position: 1-155
Cow position: chr3:15443777-15443619 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 140

Conread position: 1-155
Cow position: chr3:48900381-48900223 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 30, 56

Conread position: 1-164
Cow position: chr3:58317997-58317827 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 1-169
Cow position: chr3:70401848-70402028 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 66

Conread position: 1-227
Cow position: chr3:67930232-67930001 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 30, 59

Conread position: 2-121
Cow position: chr3:81277516-81277391 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 2-124
Cow position: chr3:65413326-65413198 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 2-130
Cow position: chr3:55010209-55010079 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 2-130
Cow position: chr3:71231348-71231481 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 71

Conread position: 2-137
Cow position: chr3:4050148-4050286 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 2-137
Cow position: chr3:53739233-53739092 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 2-145
Cow position: chr3:11606266-11606421 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 2-148
Cow position: chr3:20841921-20841768 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 2-148
Cow position: chr3:71423599-71423452 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 32, 141

Conread position: 2-148
Cow position: chr3:76387649-76387507 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 16, 32

Conread position: 2-150
Cow position: chr3:83215214-83215367 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 145

Conread position: 2-151
Cow position: chr3:69650937-69650783 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 140

Conread position: 2-152
Cow position: chr3:21641940-21642092 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 59

Conread position: 2-153
Cow position: chr3:65236976-65237132 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 145

Conread position: 2-153
Cow position: chr3:73708999-73709156 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 29, 123

Conread position: 2-154
Cow position: chr3:53046707-53046554 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 142

Conread position: 2-154
Cow position: chr3:59474074-59474232 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 27, 143

Conread position: 2-154
Cow position: chr3:59621696-59621539 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 25, 145

Conread position: 2-154
Cow position: chr3:71497186-71497029 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 28, 140

Conread position: 2-155
Cow position: chr3:4319663-4319820 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 138

Conread position: 2-155
Cow position: chr3:15751760-15751605 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 26, 126

Conread position: 2-155
Cow position: chr3:64010857-64010703 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 26, 103

Conread position: 2-155
Cow position: chr3:65058652-65058807 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 134

Conread position: 2-155
Cow position: chr3:73820416-73820259 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 128

Conread position: 2-155
Cow position: chr3:77589471-77589626 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 2-156
Cow position: chr3:48810693-48810533 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 27, 94

Conread position: 2-169
Cow position: chr3:57624416-57624589 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 27, 145

Conread position: 2-177
Cow position: chr3:10103993-10104172 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 67

Conread position: 2-177
Cow position: chr3:28908251-28908072 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 145

Conread position: 2-177
Cow position: chr3:59630550-59630378 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 137, 26

Conread position: 2-179
Cow position: chr3:21997836-21997651 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 26, 136

Conread position: 2-191
Cow position: chr3:17934986-17934795 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 27, 136

Conread position: 2-198
Cow position: chr3:54100774-54100576 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 138

Conread position: 2-203
Cow position: chr3:28258047-28258252 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 21, 108

Conread position: 2-205
Cow position: chr3:36914002-36914213 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 143

Conread position: 2-214
Cow position: chr3:30222142-30222366 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 27, 174

Conread position: 2-216
Cow position: chr3:34669775-34669560 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 161, 135

Conread position: 2-227
Cow position: chr3:61467238-61467001 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 27, 146

Conread position: 3-125
Cow position: chr3:11715951-11716078 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 36, 9

Conread position: 3-128
Cow position: chr3:60389717-60389848 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 3-130
Cow position: chr3:15228870-15228737 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 3-137
Cow position: chr3:15153644-15153784 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 3-137
Cow position: chr3:58767216-58767356 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 3-146
Cow position: chr3:48478076-48477935 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 26, 82

Conread position: 3-148
Cow position: chr3:33693773-33693922 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 30, 10

Conread position: 3-155
Cow position: chr3:24596463-24596315 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 3-155
Cow position: chr3:74787384-74787536 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 34

Conread position: 3-157
Cow position: chr3:37041372-37041530 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 20, 137

Conread position: 3-205
Cow position: chr3:5100819-5100606 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 28, 139

Conread position: 3-216
Cow position: chr3:38347146-38347360 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 57

Conread position: 4-130
Cow position: chr3:73395071-73395202 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 4-137
Cow position: chr3:58973250-58973388 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 27, 125

Conread position: 4-155
Cow position: chr3:56704367-56704211 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 143

Conread position: 4-195
Cow position: chr3:12711961-12711768 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 141

Conread position: 4-214
Cow position: chr3:46305420-46305617 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 35, 78

Conread position: 5-154
Cow position: chr3:8733399-8733250 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 58

Conread position: 5-155
Cow position: chr3:59828438-59828283 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 25, 142

Conread position: 5-198
Cow position: chr3:53704008-53703810 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 117

Conread position: 5-279
Cow position: chr3:76268020-76267742 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 23, 142

Conread position: 6-133
Cow position: chr3:11292292-11292159 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 6-139
Cow position: chr3:20515862-20515723 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 6-186
Cow position: chr3:63657905-63657719 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 117

Conread position: 7-155
Cow position: chr3:2506515-2506367 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 132, 82

Conread position: 7-198
Cow position: chr3:64373199-64373001 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 22, 187

Conread position: 10-205
Cow position: chr3:62046631-62046814 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 21-148
Cow position: chr3:70402621-70402746 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 21-176
Cow position: chr3:28556186-28556029 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 139

Conread position: 22-174
Cow position: chr3:1534127-1533975 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 109, 120

Conread position: 26-177
Cow position: chr3:53256511-53256658 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 141, 15

Conread position: 27-130
Cow position: chr3:27246976-27246873 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 90
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 28-237
Cow position: chr3:15660306-15660105 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 138, 21

Conread position: 29-130
Cow position: chr3:74846724-74846623 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 29-130
Cow position: chr3:77276473-77276373 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 29-155
Cow position: chr3:74134689-74134814 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 112, 0

Conread position: 30-176
Cow position: chr3:35285029-35285171 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 109, 0

Conread position: 30-177
Cow position: chr3:2179105-2179254 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 109, 37

Conread position: 31-153
Cow position: chr3:75966794-75966673 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 77, 23

Conread position: 31-155
Cow position: chr3:8814126-8814002 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 115, 110

Conread position: 31-223
Cow position: chr3:6853547-6853358 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 19, 35

Conread position: 32-177
Cow position: chr3:61133626-61133769 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 33-179
Cow position: chr3:32457183-32457326 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 33-205
Cow position: chr3:84175834-84175656 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 100, 170

Conread position: 36-205
Cow position: chr3:4086872-4086705 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 103, 135

Conread position: 36-205
Cow position: chr3:23265342-23265178 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 18

Conread position: 40-154
Cow position: chr3:31352879-31352770 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 40-179
Cow position: chr3:68620927-68620790 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 40-231
Cow position: chr3:27108893-27108708 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 79, 97

Conread position: 56-179
Cow position: chr3:70264199-70264076 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 112, 80

Conread position: 67-227
Cow position: chr3:48578826-48578993 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 107

Show alignments to all cow chromosomes.