Cow genome map
| Conread name: | Emb1-C0005183_C04 |
| Conread position: | 1-127 |
| Cow position: | chr4:53126082-53126211 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 1-133 |
| Cow position: | chr4:20880-21018 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-137 |
| Cow position: | chr4:1495434-1495299 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-138 |
| Cow position: | chr4:961685-961540 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-165 |
| Cow position: | chr4:65815737-65815569 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 1-206 |
| Cow position: | chr4:18095700-18095499 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 1-215 |
| Cow position: | chr4:63472107-63471883 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 26, 215 |
| Conread position: | 1-221 |
| Cow position: | chr4:61313245-61313024 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 28, 144 |
| Conread position: | 2-127 |
| Cow position: | chr4:44184139-44184015 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 2-130 |
| Cow position: | chr4:5460892-5460759 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 29, 127 |
| Conread position: | 2-130 |
| Cow position: | chr4:56570775-56570909 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 2-137 |
| Cow position: | chr4:29291485-29291624 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-137 |
| Cow position: | chr4:65175176-65175035 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-140 |
| Cow position: | chr4:37935316-37935171 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-147 |
| Cow position: | chr4:29384263-29384116 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 142 |
| Conread position: | 2-148 |
| Cow position: | chr4:18756403-18756554 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 145 |
| Conread position: | 2-148 |
| Cow position: | chr4:56239891-56239737 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-151 |
| Cow position: | chr4:29805401-29805249 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 2-155 |
| Cow position: | chr4:508940-508781 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-155 |
| Cow position: | chr4:59377878-59378036 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 27, 136 |
| Conread position: | 2-155 |
| Cow position: | chr4:65650161-65650006 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 26, 132 |
| Conread position: | 2-157 |
| Cow position: | chr4:12135958-12135798 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 19, 139 |
| Conread position: | 2-161 |
| Cow position: | chr4:16594053-16594214 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 27, 136 |
| Conread position: | 2-161 |
| Cow position: | chr4:19408028-19407863 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 2-161 |
| Cow position: | chr4:32726193-32726360 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-161 |
| Cow position: | chr4:38350231-38350066 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 143 |
| Conread position: | 2-163 |
| Cow position: | chr4:45775369-45775205 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 143 |
| Conread position: | 2-166 |
| Cow position: | chr4:45636135-45636306 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-176 |
| Cow position: | chr4:22725071-22725238 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 2-190 |
| Cow position: | chr4:47280099-47280290 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 2-205 |
| Cow position: | chr4:19542107-19542309 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 31 |
| Conread position: | 2-205 |
| Cow position: | chr4:45910008-45909801 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 24, 120 |
| Conread position: | 2-214 |
| Cow position: | chr4:37675587-37675798 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 135 |
| Conread position: | 2-215 |
| Cow position: | chr4:50676201-50675986 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 2-224 |
| Cow position: | chr4:38700188-38699960 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 150 |
| Conread position: | 2-224 |
| Cow position: | chr4:65950624-65950851 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 3-130 |
| Cow position: | chr4:34369480-34369347 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-130 |
| Cow position: | chr4:49794636-49794762 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 3-147 |
| Cow position: | chr4:12127669-12127518 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-154 |
| Cow position: | chr4:46591637-46591792 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 3-155 |
| Cow position: | chr4:51920514-51920671 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 25, 144 |
| Conread position: | 3-164 |
| Cow position: | chr4:44782345-44782510 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 26, 143 |
| Conread position: | 3-228 |
| Cow position: | chr4:30791940-30792168 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 142 |
| Conread position: | 4-137 |
| Cow position: | chr4:19102910-19102772 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 4-152 |
| Cow position: | chr4:12591243-12591088 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 4-154 |
| Cow position: | chr4:33181515-33181668 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 140 |
| Conread position: | 4-155 |
| Cow position: | chr4:45074034-45074186 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 139 |
| Conread position: | 4-155 |
| Cow position: | chr4:66547797-66547638 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 4-183 |
| Cow position: | chr4:45367710-45367893 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 134 |
| Conread position: | 4-205 |
| Cow position: | chr4:15462282-15462068 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 145 |
| Conread position: | 5-152 |
| Cow position: | chr4:26671870-26671726 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 5-153 |
| Cow position: | chr4:43579431-43579288 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 5-158 |
| Cow position: | chr4:42232051-42231893 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 56 |
| Conread position: | 5-179 |
| Cow position: | chr4:54854826-54854649 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 6-163 |
| Cow position: | chr4:47510362-47510520 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 8-307 |
| Cow position: | chr4:64040092-64040393 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 130 |
| Conread position: | 9-152 |
| Cow position: | chr4:16814366-16814506 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 9-153 |
| Cow position: | chr4:22546865-22546718 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 16-154 |
| Cow position: | chr4:39010037-39010174 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 109 |
| Conread position: | 17-153 |
| Cow position: | chr4:16239179-16239044 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 22-192 |
| Cow position: | chr4:46702663-46702502 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 23-166 |
| Cow position: | chr4:46761603-46761745 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 27-214 |
| Cow position: | chr4:13973970-13973775 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 102, 178 |
| Conread position: | 29-154 |
| Cow position: | chr4:58389240-58389113 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 29-190 |
| Cow position: | chr4:58880959-58880800 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 138, 94 |
| Conread position: | 30-198 |
| Cow position: | chr4:13520874-13520708 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 6 |
| Conread position: | 30-198 |
| Cow position: | chr4:33870077-33870250 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 31-144 |
| Cow position: | chr4:8083795-8083682 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 31-154 |
| Cow position: | chr4:65265302-65265180 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 31-155 |
| Cow position: | chr4:19539233-19539110 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 31-155 |
| Cow position: | chr4:51708069-51708192 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 31-177 |
| Cow position: | chr4:21874806-21874952 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 136, 107 |
| Conread position: | 31-183 |
| Cow position: | chr4:1875-2027 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 136, 110 |
| Conread position: | 31-187 |
| Cow position: | chr4:65805899-65806055 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 136, 110 |
| Conread position: | 31-235 |
| Cow position: | chr4:45738471-45738274 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 32-177 |
| Cow position: | chr4:19098477-19098622 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 135, 109 |
| Conread position: | 32-199 |
| Cow position: | chr4:30845376-30845539 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 33-179 |
| Cow position: | chr4:21533090-21532946 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 33-227 |
| Cow position: | chr4:5047140-5046949 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 119, 108 |
| Conread position: | 38-152 |
| Cow position: | chr4:23847040-23846928 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 38-177 |
| Cow position: | chr4:11512698-11512560 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 101, 91 |
Show alignments to all cow chromosomes.