Cow genome map
| Conread name: | Emb1-C0005183_C04 |
| Conread position: | 1-128 |
| Cow position: | chr5:37757833-37757705 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 1-130 |
| Cow position: | chr5:63987444-63987310 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 1-137 |
| Cow position: | chr5:18898977-18899116 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 1-150 |
| Cow position: | chr5:59627101-59627257 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-154 |
| Cow position: | chr5:39258509-39258665 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 1-164 |
| Cow position: | chr5:51490244-51490078 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 1-198 |
| Cow position: | chr5:458490-458689 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 28, 82 |
| Conread position: | 1-223 |
| Cow position: | chr5:56428310-56428085 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 1-227 |
| Cow position: | chr5:57737100-57737338 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 225 |
| Conread position: | 2-112 |
| Cow position: | chr5:52645078-52644962 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-130 |
| Cow position: | chr5:26990398-26990524 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-137 |
| Cow position: | chr5:49501822-49501681 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-137 |
| Cow position: | chr5:55795965-55795823 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 2-142 |
| Cow position: | chr5:38717312-38717457 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 2-147 |
| Cow position: | chr5:30805167-30805318 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 2-147 |
| Cow position: | chr5:41713301-41713450 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 136 |
| Conread position: | 2-152 |
| Cow position: | chr5:4267672-4267828 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 143 |
| Conread position: | 2-154 |
| Cow position: | chr5:35969535-35969691 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 144 |
| Conread position: | 2-155 |
| Cow position: | chr5:20779393-20779239 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 133 |
| Conread position: | 2-155 |
| Cow position: | chr5:52723579-52723733 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 2-155 |
| Cow position: | chr5:61875545-61875697 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 2-155 |
| Cow position: | chr5:67932464-67932314 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 2-157 |
| Cow position: | chr5:13717566-13717406 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 2-159 |
| Cow position: | chr5:29828048-29828210 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 2-170 |
| Cow position: | chr5:26477015-26476840 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 2-170 |
| Cow position: | chr5:45420135-45419963 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 27, 145 |
| Conread position: | 2-174 |
| Cow position: | chr5:55019294-55019473 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 2-179 |
| Cow position: | chr5:43992326-43992507 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 142 |
| Conread position: | 2-191 |
| Cow position: | chr5:55129345-55129541 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 31, 140 |
| Conread position: | 2-197 |
| Cow position: | chr5:27293882-27293683 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 145 |
| Conread position: | 2-198 |
| Cow position: | chr5:58555138-58555344 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 6, 175 |
| Conread position: | 2-205 |
| Cow position: | chr5:52108266-52108064 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 2-205 |
| Cow position: | chr5:54311338-54311550 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 27, 175 |
| Conread position: | 2-205 |
| Cow position: | chr5:63234822-63234629 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 32, 131 |
| Conread position: | 2-207 |
| Cow position: | chr5:17566436-17566236 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 137 |
| Conread position: | 3-128 |
| Cow position: | chr5:28035747-28035876 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 3-128 |
| Cow position: | chr5:39875127-39875258 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 3-130 |
| Cow position: | chr5:50575787-50575919 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 3-137 |
| Cow position: | chr5:26262671-26262536 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 32, 60 |
| Conread position: | 3-137 |
| Cow position: | chr5:47323466-47323605 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-152 |
| Cow position: | chr5:47696438-47696293 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 3-160 |
| Cow position: | chr5:11668182-11668022 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 30, 139 |
| Conread position: | 3-171 |
| Cow position: | chr5:44796730-44796554 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 3-176 |
| Cow position: | chr5:54060281-54060456 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 142 |
| Conread position: | 3-177 |
| Cow position: | chr5:41294085-41294263 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 143 |
| Conread position: | 3-184 |
| Cow position: | chr5:54767905-54767719 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 25, 143 |
| Conread position: | 3-198 |
| Cow position: | chr5:58446810-58447016 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 30, 175 |
| Conread position: | 4-147 |
| Cow position: | chr5:44848020-44847867 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 4-159 |
| Cow position: | chr5:29771532-29771694 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 4-160 |
| Cow position: | chr5:57230334-57230172 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 4-183 |
| Cow position: | chr5:64758763-64758578 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 129 |
| Conread position: | 4-196 |
| Cow position: | chr5:31434290-31434491 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 104 |
| Conread position: | 6-153 |
| Cow position: | chr5:9369265-9369113 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 25, 129 |
| Conread position: | 6-214 |
| Cow position: | chr5:46322792-46322579 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 7-227 |
| Cow position: | chr5:26723455-26723690 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 11-174 |
| Cow position: | chr5:42623160-42623000 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 156, 20 |
| Conread position: | 24-136 |
| Cow position: | chr5:14153702-14153809 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 25-155 |
| Cow position: | chr5:56433912-56434043 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 27-136 |
| Cow position: | chr5:62142709-62142818 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-148 |
| Cow position: | chr5:54436787-54436908 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 104, 7 |
| Conread position: | 27-152 |
| Cow position: | chr5:51125976-51125851 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-153 |
| Cow position: | chr5:44734692-44734567 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 27-173 |
| Cow position: | chr5:70353951-70353804 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 116 |
| Conread position: | 28-154 |
| Cow position: | chr5:49821462-49821586 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 28-177 |
| Cow position: | chr5:58856137-58856285 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 139, 39 |
| Conread position: | 29-153 |
| Cow position: | chr5:51490567-51490444 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 29-154 |
| Cow position: | chr5:47743663-47743788 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 101, 56 |
| Conread position: | 29-155 |
| Cow position: | chr5:39035815-39035940 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 107, 81 |
| Conread position: | 29-205 |
| Cow position: | chr5:38647675-38647850 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 138 |
| Conread position: | 31-137 |
| Cow position: | chr5:16179474-16179368 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-140 |
| Cow position: | chr5:27306341-27306451 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 31-155 |
| Cow position: | chr5:37808626-37808502 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 108, 116 |
| Conread position: | 32-151 |
| Cow position: | chr5:16668735-16668853 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 32-198 |
| Cow position: | chr5:57744886-57744722 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 110 |
| Conread position: | 32-205 |
| Cow position: | chr5:20882586-20882419 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 126, 107 |
| Conread position: | 32-205 |
| Cow position: | chr5:57156274-57156106 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 32-227 |
| Cow position: | chr5:45037288-45037483 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 148, 91 |
| Conread position: | 33-182 |
| Cow position: | chr5:44752269-44752123 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 107 |
| Conread position: | 38-152 |
| Cow position: | chr5:29979914-29979801 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 46-162 |
| Cow position: | chr5:23866428-23866313 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.