Cow genome map

Conread name: Emb1-C0005183_C04

Conread position: 1-155
Cow position: chr9:6934020-6934178 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 22, 72

Conread position: 1-155
Cow position: chr9:40005528-40005370 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 131

Conread position: 1-157
Cow position: chr9:64064309-64064470 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 30, 146

Conread position: 1-179
Cow position: chr9:55532868-55532689 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 28, 132

Conread position: 1-205
Cow position: chr9:52513394-52513604 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 28, 141

Conread position: 1-222
Cow position: chr9:16300515-16300740 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 27, 137

Conread position: 1-227
Cow position: chr9:35167230-35167005 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 28, 146

Conread position: 1-236
Cow position: chr9:38846283-38846511 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 34, 133

Conread position: 2-119
Cow position: chr9:32991322-32991205 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 22, 71

Conread position: 2-124
Cow position: chr9:19493413-19493541 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 2-128
Cow position: chr9:34902056-34902180 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 50

Conread position: 2-129
Cow position: chr9:15225243-15225376 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 2-129
Cow position: chr9:33347437-33347570 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 2-130
Cow position: chr9:35793723-35793596 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 2-130
Cow position: chr9:43443854-43443723 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 2-130
Cow position: chr9:58368944-58369077 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 55

Conread position: 2-137
Cow position: chr9:8338080-8337939 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 2-137
Cow position: chr9:24652457-24652316 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 2-137
Cow position: chr9:27347849-27347715 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 31, 102

Conread position: 2-137
Cow position: chr9:28354571-28354429 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 2-137
Cow position: chr9:41781707-41781566 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 2-137
Cow position: chr9:43871028-43870887 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 2-147
Cow position: chr9:7805908-7806058 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 145

Conread position: 2-147
Cow position: chr9:29819771-29819622 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 29, 103

Conread position: 2-147
Cow position: chr9:40215296-40215149 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 27, 57

Conread position: 2-147
Cow position: chr9:52598668-52598818 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 20, 145

Conread position: 2-150
Cow position: chr9:38645293-38645446 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 58

Conread position: 2-153
Cow position: chr9:9552143-9551986 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 128

Conread position: 2-154
Cow position: chr9:30477723-30477877 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 27, 10

Conread position: 2-154
Cow position: chr9:47214492-47214648 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 133

Conread position: 2-154
Cow position: chr9:54677310-54677158 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 39, 32

Conread position: 2-155
Cow position: chr9:1729621-1729779 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 140

Conread position: 2-155
Cow position: chr9:5594556-5594397 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 2-155
Cow position: chr9:9443551-9443707 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 32, 0

Conread position: 2-155
Cow position: chr9:17518436-17518596 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 2-173
Cow position: chr9:4580351-4580528 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 29, 152

Conread position: 2-176
Cow position: chr9:50080987-50081165 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 27, 145

Conread position: 2-176
Cow position: chr9:50543373-50543552 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 27, 122

Conread position: 2-179
Cow position: chr9:44467297-44467471 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 75, 13

Conread position: 2-188
Cow position: chr9:54528565-54528376 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 26, 58

Conread position: 2-192
Cow position: chr9:18217046-18217244 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 2-198
Cow position: chr9:42445930-42446127 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 136

Conread position: 2-198
Cow position: chr9:54716553-54716749 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 37, 62

Conread position: 2-205
Cow position: chr9:26310559-26310345 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 27, 205

Conread position: 2-214
Cow position: chr9:37069504-37069720 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 135

Conread position: 2-227
Cow position: chr9:11304026-11304254 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 27, 54

Conread position: 3-128
Cow position: chr9:25921875-25921744 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 3-137
Cow position: chr9:26859400-26859267 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 3-137
Cow position: chr9:51720849-51720985 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 28, 10

Conread position: 3-155
Cow position: chr9:41283067-41282908 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 3-300
Cow position: chr9:34284006-34283703 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 209
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 123

Conread position: 4-128
Cow position: chr9:25400150-25400277 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 67

Conread position: 4-155
Cow position: chr9:34484646-34484488 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 4-163
Cow position: chr9:43342380-43342218 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 20, 141

Conread position: 4-172
Cow position: chr9:45455122-45454955 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 5, 130

Conread position: 4-190
Cow position: chr9:17310514-17310705 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 56

Conread position: 4-191
Cow position: chr9:25628135-25627943 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 22, 153

Conread position: 4-198
Cow position: chr9:8288666-8288464 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 70

Conread position: 4-200
Cow position: chr9:36445671-36445466 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 173

Conread position: 5-155
Cow position: chr9:4263046-4263193 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 99, 0

Conread position: 5-155
Cow position: chr9:38941382-38941537 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 133

Conread position: 5-205
Cow position: chr9:5407473-5407675 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 26, 129

Conread position: 5-205
Cow position: chr9:9243589-9243406 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 6-190
Cow position: chr9:59386720-59386911 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 187

Conread position: 7-167
Cow position: chr9:50139327-50139172 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 132, 0

Conread position: 7-227
Cow position: chr9:33598027-33597809 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 197, 15

Conread position: 9-123
Cow position: chr9:48157124-48157005 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 9-155
Cow position: chr9:42062139-42061993 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 9-198
Cow position: chr9:24243675-24243872 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 20, 135

Conread position: 15-214
Cow position: chr9:22375210-22375012 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 94

Conread position: 20-205
Cow position: chr9:3847431-3847257 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 24-175
Cow position: chr9:46190169-46190018 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 119

Conread position: 27-148
Cow position: chr9:34135738-34135617 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 112, 89

Conread position: 29-165
Cow position: chr9:39758538-39758401 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 29-166
Cow position: chr9:28295312-28295174 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 100, 0

Conread position: 29-176
Cow position: chr9:31345520-31345373 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 138, 109

Conread position: 29-177
Cow position: chr9:24429076-24429228 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 99, 133

Conread position: 29-201
Cow position: chr9:8562840-8562669 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 26

Conread position: 31-130
Cow position: chr9:5756970-5757070 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 31-148
Cow position: chr9:27345566-27345681 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 31-150
Cow position: chr9:17411175-17411295 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 31-153
Cow position: chr9:34707294-34707414 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 31-153
Cow position: chr9:35832601-35832721 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 31-191
Cow position: chr9:28686405-28686248 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 31-193
Cow position: chr9:34014231-34014397 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 108, 0

Conread position: 31-214
Cow position: chr9:52807386-52807572 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 100, 111

Conread position: 31-241
Cow position: chr9:52001035-52000828 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 108, 64

Conread position: 33-177
Cow position: chr9:23403834-23403689 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 134, 108

Conread position: 38-177
Cow position: chr9:1520726-1520867 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 28, 81

Conread position: 38-198
Cow position: chr9:33681670-33681509 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 141, 103

Conread position: 41-191
Cow position: chr9:41716449-41716300 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 103, 113

Conread position: 43-154
Cow position: chr9:11161335-11161230 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 56, 0

Show alignments to all cow chromosomes.