Cow genome map

Conread name: Emb1-C0005183_C04

Conread position: 1-130
Cow position: chrX:23188778-23188647 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 1-140
Cow position: chrX:10411984-10411837 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 1-155
Cow position: chrX:15147191-15147035 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 26, 35

Conread position: 1-155
Cow position: chrX:42247180-42247021 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 141

Conread position: 1-177
Cow position: chrX:29121049-29121230 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 28, 137

Conread position: 1-198
Cow position: chrX:41270985-41270777 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 10, 0

Conread position: 1-205
Cow position: chrX:37489721-37489925 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 26, 114

Conread position: 1-214
Cow position: chrX:6690258-6690035 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 26, 205

Conread position: 2-127
Cow position: chrX:31515176-31515308 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 2-129
Cow position: chrX:917364-917232 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 2-130
Cow position: chrX:31442826-31442692 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 2-130
Cow position: chrX:34565289-34565420 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 81

Conread position: 2-130
Cow position: chrX:38722124-38722259 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 2-130
Cow position: chrX:42893927-42894063 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 2-133
Cow position: chrX:20678135-20678002 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 2-137
Cow position: chrX:126775-126911 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 2-139
Cow position: chrX:36514890-36514747 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 137

Conread position: 2-143
Cow position: chrX:44961754-44961902 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 2-147
Cow position: chrX:11082619-11082468 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 2-150
Cow position: chrX:8797259-8797405 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 31

Conread position: 2-151
Cow position: chrX:18964820-18964673 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 50, 31

Conread position: 2-153
Cow position: chrX:31294569-31294407 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 2-153
Cow position: chrX:40680617-40680777 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 2-154
Cow position: chrX:31252420-31252565 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 2-154
Cow position: chrX:38218717-38218876 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 147

Conread position: 2-155
Cow position: chrX:169542-169385 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 144

Conread position: 2-155
Cow position: chrX:17956696-17956851 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 27, 73

Conread position: 2-155
Cow position: chrX:27075048-27074889 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 2-155
Cow position: chrX:32877364-32877214 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 2-155
Cow position: chrX:37910448-37910607 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 127

Conread position: 2-166
Cow position: chrX:4043860-4043693 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 57

Conread position: 2-176
Cow position: chrX:32910107-32910280 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 91

Conread position: 2-177
Cow position: chrX:9365673-9365490 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 2-177
Cow position: chrX:18046404-18046588 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 33, 91

Conread position: 2-177
Cow position: chrX:43730220-43730040 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 27, 144

Conread position: 2-179
Cow position: chrX:11717780-11717597 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 29, 170

Conread position: 2-184
Cow position: chrX:6223125-6222936 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 2-190
Cow position: chrX:20743607-20743799 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 170

Conread position: 2-198
Cow position: chrX:5872320-5872522 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 27, 140

Conread position: 2-198
Cow position: chrX:13382334-13382532 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 100, 31

Conread position: 2-198
Cow position: chrX:25411910-25412112 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 27, 118

Conread position: 2-211
Cow position: chrX:11085060-11084837 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 29, 85

Conread position: 2-215
Cow position: chrX:28878171-28877957 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 27, 143

Conread position: 3-130
Cow position: chrX:3806686-3806819 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 3-150
Cow position: chrX:33639982-33640131 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 14, 141

Conread position: 3-153
Cow position: chrX:20887635-20887483 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 140

Conread position: 3-176
Cow position: chrX:23562636-23562816 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 144

Conread position: 3-179
Cow position: chrX:37129273-37129457 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 25, 172

Conread position: 3-227
Cow position: chrX:42855462-42855685 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 26, 141

Conread position: 3-230
Cow position: chrX:23498673-23498438 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 26, 57

Conread position: 3-307
Cow position: chrX:42171290-42170978 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 206
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 90

Conread position: 4-128
Cow position: chrX:17966346-17966476 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 4-137
Cow position: chrX:22915035-22914898 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 89

Conread position: 4-148
Cow position: chrX:41068730-41068881 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 4-152
Cow position: chrX:14973736-14973588 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 135

Conread position: 4-153
Cow position: chrX:27261196-27261353 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 4-154
Cow position: chrX:29601823-29601666 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 4-155
Cow position: chrX:1122538-1122386 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 54

Conread position: 4-155
Cow position: chrX:34502925-34503083 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 25, 0

Conread position: 4-156
Cow position: chrX:39220084-39220241 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 143

Conread position: 4-168
Cow position: chrX:7277916-7278077 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 27, 130

Conread position: 4-174
Cow position: chrX:29680256-29680078 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 4-227
Cow position: chrX:27394021-27393796 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 27, 141

Conread position: 5-122
Cow position: chrX:37665697-37665820 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 5-137
Cow position: chrX:19018825-19018687 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 5-158
Cow position: chrX:17888413-17888258 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 29, 138

Conread position: 5-198
Cow position: chrX:23561863-23562063 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 128

Conread position: 6-198
Cow position: chrX:31829454-31829252 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 6-217
Cow position: chrX:18694920-18694709 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 53

Conread position: 9-227
Cow position: chrX:27667443-27667662 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 130, 22

Conread position: 10-155
Cow position: chrX:38549464-38549608 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 22, 27

Conread position: 23-154
Cow position: chrX:27202603-27202732 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 116, 10

Conread position: 27-139
Cow position: chrX:10076005-10076117 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 88
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-133
Cow position: chrX:46072781-46072677 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 91
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 29-153
Cow position: chrX:8326940-8327067 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 29-155
Cow position: chrX:40685292-40685167 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 112, 0

Conread position: 29-184
Cow position: chrX:31312065-31312216 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 138, 110

Conread position: 31-156
Cow position: chrX:48822304-48822181 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 31-161
Cow position: chrX:40355073-40355198 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 31-177
Cow position: chrX:23266453-23266596 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 136, 104

Conread position: 31-199
Cow position: chrX:37062547-37062376 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 88, 111

Conread position: 31-203
Cow position: chrX:23574693-23574855 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 31-214
Cow position: chrX:4612844-4612666 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 103, 83

Conread position: 32-199
Cow position: chrX:23860955-23860790 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 150, 100

Conread position: 38-158
Cow position: chrX:1503372-1503491 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 114, 0

Conread position: 39-155
Cow position: chrX:6389127-6389243 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 41

Conread position: 39-177
Cow position: chrX:23187547-23187407 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 39-205
Cow position: chrX:43014627-43014464 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 102, 0

Conread position: 42-175
Cow position: chrX:25282989-25282857 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 125, 98

Conread position: 42-241
Cow position: chrX:19097169-19096968 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 97, 29

Conread position: 44-214
Cow position: chrX:12255267-12255097 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 95, 19

Conread position: 56-177
Cow position: chrX:16481507-16481386 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 111, 85

Show alignments to all cow chromosomes.