Cow genome map
| Conread name: | Emb1-C0005183_N05 |
| Conread position: | 1-149 |
| Cow position: | chr1:80973621-80973466 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 114 |
| Conread position: | 1-150 |
| Cow position: | chr1:8192747-8192592 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 69, 120 |
| Conread position: | 1-181 |
| Cow position: | chr1:80764553-80764361 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-192 |
| Cow position: | chr1:70533953-70533753 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 1-193 |
| Cow position: | chr1:18414484-18414284 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 167 |
| Conread position: | 1-194 |
| Cow position: | chr1:3657379-3657180 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 130 |
| Conread position: | 1-194 |
| Cow position: | chr1:26688489-26688285 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-194 |
| Cow position: | chr1:35843944-35843735 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-194 |
| Cow position: | chr1:46646378-46646570 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 1-194 |
| Cow position: | chr1:54216999-54217203 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-194 |
| Cow position: | chr1:57119364-57119160 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 1-195 |
| Cow position: | chr1:58825527-58825728 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 137 |
| Conread position: | 1-197 |
| Cow position: | chr1:75183764-75183561 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 1-197 |
| Cow position: | chr1:78791322-78791118 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 1-198 |
| Cow position: | chr1:22777561-22777351 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-200 |
| Cow position: | chr1:74947135-74946927 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 1-204 |
| Cow position: | chr1:53039719-53039513 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 1-204 |
| Cow position: | chr1:53920573-53920783 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 67, 203 |
| Conread position: | 1-206 |
| Cow position: | chr1:61737080-61737297 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-207 |
| Cow position: | chr1:50634274-50634059 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-207 |
| Cow position: | chr1:73900991-73901198 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 61, 188 |
| Conread position: | 1-208 |
| Cow position: | chr1:46006223-46006008 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 53, 171 |
| Conread position: | 1-209 |
| Cow position: | chr1:51904351-51904140 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 69 |
| Conread position: | 1-212 |
| Cow position: | chr1:71136135-71136354 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 1-214 |
| Cow position: | chr1:5278428-5278212 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 69 |
| Conread position: | 2-197 |
| Cow position: | chr1:90423097-90422892 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 2-197 |
| Cow position: | chr1:102466288-102466489 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 3-206 |
| Cow position: | chr1:71782678-71782469 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 157 |
| Conread position: | 3-209 |
| Cow position: | chr1:7657325-7657116 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 153 |
| Conread position: | 4-180 |
| Cow position: | chr1:41735635-41735446 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 4-188 |
| Cow position: | chr1:56643601-56643423 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-189 |
| Cow position: | chr1:69415724-69415528 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 56, 101 |
| Conread position: | 4-193 |
| Cow position: | chr1:7142860-7142675 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 4-197 |
| Cow position: | chr1:5347048-5347245 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 112 |
| Conread position: | 4-197 |
| Cow position: | chr1:44746850-44747050 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 12 |
| Conread position: | 4-197 |
| Cow position: | chr1:54289207-54289001 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 4-198 |
| Cow position: | chr1:3289154-3288957 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 78, 66 |
| Conread position: | 4-199 |
| Cow position: | chr1:64189486-64189692 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 198 |
| Conread position: | 4-206 |
| Cow position: | chr1:89548179-89548385 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 5-189 |
| Cow position: | chr1:36614099-36613910 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 65, 151 |
| Conread position: | 5-198 |
| Cow position: | chr1:64218440-64218238 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 6-182 |
| Cow position: | chr1:85411568-85411750 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 151 |
| Conread position: | 6-191 |
| Cow position: | chr1:49131123-49130947 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-208 |
| Cow position: | chr1:28678510-28678728 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 7-191 |
| Cow position: | chr1:4788526-4788718 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 7-198 |
| Cow position: | chr1:75998477-75998280 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 9-199 |
| Cow position: | chr1:70416120-70416320 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 10-205 |
| Cow position: | chr1:97603642-97603440 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 11-205 |
| Cow position: | chr1:70236269-70236072 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 12-207 |
| Cow position: | chr1:45479594-45479391 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 13-192 |
| Cow position: | chr1:6130738-6130555 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 119 |
| Conread position: | 16-206 |
| Cow position: | chr1:46205812-46206008 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 18-191 |
| Cow position: | chr1:80384764-80384579 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 24-194 |
| Cow position: | chr1:25184120-25184298 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 33-198 |
| Cow position: | chr1:5102474-5102303 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 36, 132 |
| Conread position: | 45-209 |
| Cow position: | chr1:13195400-13195232 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 61 |
| Conread position: | 57-197 |
| Cow position: | chr1:82076628-82076763 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 57-204 |
| Cow position: | chr1:55181777-55181629 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 57-204 |
| Cow position: | chr1:55184831-55184979 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 71-198 |
| Cow position: | chr1:75224979-75225105 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 119, 96 |
| Conread position: | 71-198 |
| Cow position: | chr1:90180213-90180338 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 72-198 |
| Cow position: | chr1:23674403-23674279 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 73-193 |
| Cow position: | chr1:79215802-79215682 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-193 |
| Cow position: | chr1:86369387-86369508 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 74-212 |
| Cow position: | chr1:38525675-38525813 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 8 |
| Conread position: | 76-196 |
| Cow position: | chr1:44086330-44086214 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 76-197 |
| Cow position: | chr1:80886575-80886695 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 76-198 |
| Cow position: | chr1:3570242-3570120 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-206 |
| Cow position: | chr1:67974016-67973890 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 77-192 |
| Cow position: | chr1:63364699-63364813 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 77-195 |
| Cow position: | chr1:46120334-46120454 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 78-198 |
| Cow position: | chr1:87149104-87149224 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-194 |
| Cow position: | chr1:12227019-12226913 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.