Cow genome map
| Conread name: | Emb1-C0005183_N05 |
| Conread position: | 1-146 |
| Cow position: | chr11:72082668-72082820 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 1-187 |
| Cow position: | chr11:70399810-70399997 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-189 |
| Cow position: | chr11:29802627-29802435 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 65, 94 |
| Conread position: | 1-192 |
| Cow position: | chr11:11785291-11785495 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 51, 95 |
| Conread position: | 1-193 |
| Cow position: | chr11:53452386-53452186 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-194 |
| Cow position: | chr11:31894236-31894436 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 10 |
| Conread position: | 1-195 |
| Cow position: | chr11:55821744-55821552 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 1-197 |
| Cow position: | chr11:20491532-20491731 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 1-197 |
| Cow position: | chr11:81518213-81518013 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 76, 160 |
| Conread position: | 1-198 |
| Cow position: | chr11:4609878-4609681 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 124 |
| Conread position: | 1-198 |
| Cow position: | chr11:27681460-27681669 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-198 |
| Cow position: | chr11:69402289-69402083 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 1-199 |
| Cow position: | chr11:7001971-7001760 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-199 |
| Cow position: | chr11:24967412-24967608 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 76, 132 |
| Conread position: | 1-202 |
| Cow position: | chr11:50953604-50953392 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 207 |
| Conread position: | 1-206 |
| Cow position: | chr11:8828669-8828456 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-206 |
| Cow position: | chr11:66401659-66401863 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 1-207 |
| Cow position: | chr11:34946112-34945894 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-208 |
| Cow position: | chr11:16000888-16001106 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-208 |
| Cow position: | chr11:27722351-27722573 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-208 |
| Cow position: | chr11:42519697-42519910 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 69, 105 |
| Conread position: | 1-209 |
| Cow position: | chr11:17452196-17452413 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 199 |
| Conread position: | 1-209 |
| Cow position: | chr11:48983085-48983294 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 1-210 |
| Cow position: | chr11:73499231-73499014 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 16 |
| Conread position: | 2-194 |
| Cow position: | chr11:11752557-11752352 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-194 |
| Cow position: | chr11:47125509-47125708 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 4-168 |
| Cow position: | chr11:60137657-60137826 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 59, 159 |
| Conread position: | 4-182 |
| Cow position: | chr11:31422693-31422883 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 4-194 |
| Cow position: | chr11:17151638-17151835 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 4-197 |
| Cow position: | chr11:30471794-30471602 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 12 |
| Conread position: | 4-197 |
| Cow position: | chr11:40485973-40485791 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 143, 50 |
| Conread position: | 4-198 |
| Cow position: | chr11:1596491-1596294 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 4-198 |
| Cow position: | chr11:19269120-19268923 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 4-198 |
| Cow position: | chr11:19501931-19502136 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-198 |
| Cow position: | chr11:72035319-72035528 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 4-199 |
| Cow position: | chr11:76395738-76395921 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 4-207 |
| Cow position: | chr11:84795786-84795577 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 4-208 |
| Cow position: | chr11:9874282-9874491 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 102 |
| Conread position: | 4-208 |
| Cow position: | chr11:53445741-53445948 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 4-211 |
| Cow position: | chr11:40275638-40275420 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 4-211 |
| Cow position: | chr11:40279130-40278912 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 4-213 |
| Cow position: | chr11:39808955-39809176 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 136 |
| Conread position: | 5-190 |
| Cow position: | chr11:12949980-12949789 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 97 |
| Conread position: | 5-199 |
| Cow position: | chr11:32438988-32438783 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 50, 119 |
| Conread position: | 5-209 |
| Cow position: | chr11:67871639-67871423 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 6-189 |
| Cow position: | chr11:19238191-19238008 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 6-207 |
| Cow position: | chr11:45889927-45890136 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 6-211 |
| Cow position: | chr11:47193479-47193697 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 9-209 |
| Cow position: | chr11:43526159-43525942 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 10-197 |
| Cow position: | chr11:19606286-19606479 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 97 |
| Conread position: | 11-199 |
| Cow position: | chr11:2394115-2393921 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 59, 158 |
| Conread position: | 11-211 |
| Cow position: | chr11:65988197-65988401 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 56, 160 |
| Conread position: | 12-189 |
| Cow position: | chr11:47565968-47565779 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 183 |
| Conread position: | 13-195 |
| Cow position: | chr11:23047789-23047599 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 13-197 |
| Cow position: | chr11:37372280-37372479 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 13-217 |
| Cow position: | chr11:51745324-51745532 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 99 |
| Conread position: | 17-194 |
| Cow position: | chr11:66265572-66265738 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 20-189 |
| Cow position: | chr11:75255387-75255559 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 49, 111 |
| Conread position: | 21-205 |
| Cow position: | chr11:58112948-58112751 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 24-198 |
| Cow position: | chr11:34642247-34642068 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 54, 157 |
| Conread position: | 24-201 |
| Cow position: | chr11:46699997-46700179 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 25-197 |
| Cow position: | chr11:13306836-13306656 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 26-198 |
| Cow position: | chr11:13122027-13121850 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 151 |
| Conread position: | 33-195 |
| Cow position: | chr11:44609556-44609725 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 47-198 |
| Cow position: | chr11:34136521-34136670 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 54-198 |
| Cow position: | chr11:21136838-21136982 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 64-206 |
| Cow position: | chr11:5188162-5188302 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 51 |
| Conread position: | 71-208 |
| Cow position: | chr11:43644045-43643909 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 125, 13 |
| Conread position: | 73-207 |
| Cow position: | chr11:373101-372967 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-181 |
| Cow position: | chr11:76007425-76007530 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-192 |
| Cow position: | chr11:6729714-6729830 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-197 |
| Cow position: | chr11:42062426-42062305 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-198 |
| Cow position: | chr11:696302-696182 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 76-198 |
| Cow position: | chr11:54058037-54058159 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-199 |
| Cow position: | chr11:76851791-76851668 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-204 |
| Cow position: | chr11:33191576-33191448 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-206 |
| Cow position: | chr11:7333064-7332939 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 77-209 |
| Cow position: | chr11:67940950-67941081 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 90-203 |
| Cow position: | chr11:1133952-1133839 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 67 |
Show alignments to all cow chromosomes.