Cow genome map
| Conread name: | Emb1-C0005183_N05 |
| Conread position: | 1-161 |
| Cow position: | chr3:4329276-4329444 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-179 |
| Cow position: | chr3:25250861-25251047 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 24 |
| Conread position: | 1-181 |
| Cow position: | chr3:10431557-10431744 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 1-182 |
| Cow position: | chr3:58632519-58632707 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 71, 59 |
| Conread position: | 1-189 |
| Cow position: | chr3:14505962-14505762 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-193 |
| Cow position: | chr3:5419907-5419712 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 69, 176 |
| Conread position: | 1-193 |
| Cow position: | chr3:58291936-58291736 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-194 |
| Cow position: | chr3:8752740-8752942 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 111 |
| Conread position: | 1-194 |
| Cow position: | chr3:23092023-23091821 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 51, 109 |
| Conread position: | 1-196 |
| Cow position: | chr3:61009481-61009285 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 1-197 |
| Cow position: | chr3:55991912-55991709 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 138 |
| Conread position: | 1-197 |
| Cow position: | chr3:70354278-70354077 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 1-198 |
| Cow position: | chr3:9629840-9630042 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 30, 102 |
| Conread position: | 1-198 |
| Cow position: | chr3:15221565-15221357 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 188 |
| Conread position: | 1-198 |
| Cow position: | chr3:41550422-41550215 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 49, 114 |
| Conread position: | 1-199 |
| Cow position: | chr3:61322797-61322998 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 160 |
| Conread position: | 1-200 |
| Cow position: | chr3:5601214-5601006 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 55, 135 |
| Conread position: | 1-200 |
| Cow position: | chr3:73436488-73436276 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-204 |
| Cow position: | chr3:77490532-77490739 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 1-207 |
| Cow position: | chr3:56637617-56637822 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 1-208 |
| Cow position: | chr3:53588430-53588213 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 1-212 |
| Cow position: | chr3:20092569-20092350 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-215 |
| Cow position: | chr3:25090989-25091210 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 128 |
| Conread position: | 3-156 |
| Cow position: | chr3:37452027-37452184 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 134 |
| Conread position: | 3-199 |
| Cow position: | chr3:64536605-64536407 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 4-185 |
| Cow position: | chr3:6690211-6690399 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 4-189 |
| Cow position: | chr3:55373610-55373414 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 4-190 |
| Cow position: | chr3:31933140-31932952 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 155 |
| Conread position: | 4-198 |
| Cow position: | chr3:24300317-24300529 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 4-207 |
| Cow position: | chr3:74205849-74205635 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 4-208 |
| Cow position: | chr3:8924003-8924212 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 4-216 |
| Cow position: | chr3:30839205-30839421 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 56, 155 |
| Conread position: | 5-193 |
| Cow position: | chr3:22271494-22271300 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 142 |
| Conread position: | 5-194 |
| Cow position: | chr3:12255437-12255629 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 5-194 |
| Cow position: | chr3:24538833-24539030 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 5-199 |
| Cow position: | chr3:54340465-54340259 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 136 |
| Conread position: | 5-206 |
| Cow position: | chr3:51146709-51146503 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 5-209 |
| Cow position: | chr3:62884164-62884369 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 57, 126 |
| Conread position: | 5-213 |
| Cow position: | chr3:9074389-9074169 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 6-150 |
| Cow position: | chr3:1300177-1300329 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 6-194 |
| Cow position: | chr3:61411085-61411278 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 6-198 |
| Cow position: | chr3:25076209-25076005 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 7-207 |
| Cow position: | chr3:39911096-39910891 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 63, 124 |
| Conread position: | 9-198 |
| Cow position: | chr3:68342288-68342098 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 10-207 |
| Cow position: | chr3:18214178-18213967 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 167 |
| Conread position: | 11-193 |
| Cow position: | chr3:891231-891419 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 154 |
| Conread position: | 11-200 |
| Cow position: | chr3:23111550-23111350 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 164 |
| Conread position: | 11-202 |
| Cow position: | chr3:63039079-63039265 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 178, 60 |
| Conread position: | 11-207 |
| Cow position: | chr3:22953916-22953717 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 11-209 |
| Cow position: | chr3:74611530-74611736 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 13-200 |
| Cow position: | chr3:77297345-77297154 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 13-213 |
| Cow position: | chr3:50281787-50281576 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 24, 152 |
| Conread position: | 15-198 |
| Cow position: | chr3:58448093-58447905 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 37 |
| Conread position: | 22-208 |
| Cow position: | chr3:5844897-5845091 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 24-194 |
| Cow position: | chr3:54126276-54126102 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 29-177 |
| Cow position: | chr3:74701358-74701205 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 45-205 |
| Cow position: | chr3:84112580-84112410 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 46-207 |
| Cow position: | chr3:74912855-74913021 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 24, 130 |
| Conread position: | 65-197 |
| Cow position: | chr3:57634293-57634425 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 71-197 |
| Cow position: | chr3:25027436-25027561 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 74-199 |
| Cow position: | chr3:61116815-61116691 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 76-198 |
| Cow position: | chr3:60145255-60145376 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 76-208 |
| Cow position: | chr3:62628225-62628092 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 114, 91 |
Show alignments to all cow chromosomes.