Cow genome map
| Conread name: | Emb1-C0005183_N05 |
| Conread position: | 1-187 |
| Cow position: | chr4:3267893-3267703 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-187 |
| Cow position: | chr4:19307230-19307421 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 65, 70 |
| Conread position: | 1-189 |
| Cow position: | chr4:18439596-18439407 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 150 |
| Conread position: | 1-189 |
| Cow position: | chr4:31172647-31172841 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 69, 24 |
| Conread position: | 1-189 |
| Cow position: | chr4:36813347-36813545 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 178 |
| Conread position: | 1-189 |
| Cow position: | chr4:49001324-49001142 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-191 |
| Cow position: | chr4:21365378-21365573 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 109 |
| Conread position: | 1-194 |
| Cow position: | chr4:2121428-2121224 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-194 |
| Cow position: | chr4:22249476-22249276 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 69, 162 |
| Conread position: | 1-194 |
| Cow position: | chr4:50769798-50769593 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 1-194 |
| Cow position: | chr4:54146492-54146302 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 67, 5 |
| Conread position: | 1-198 |
| Cow position: | chr4:23166877-23167075 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 1-199 |
| Cow position: | chr4:27371889-27371686 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 1-199 |
| Cow position: | chr4:45919007-45919212 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 136 |
| Conread position: | 1-201 |
| Cow position: | chr4:1799879-1800087 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 71, 136 |
| Conread position: | 1-206 |
| Cow position: | chr4:65604499-65604288 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 1-208 |
| Cow position: | chr4:53752495-53752717 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 69, 142 |
| Conread position: | 1-211 |
| Cow position: | chr4:24415535-24415744 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 43 |
| Conread position: | 2-199 |
| Cow position: | chr4:9799977-9800181 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 3-187 |
| Cow position: | chr4:65406394-65406210 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 99 |
| Conread position: | 3-198 |
| Cow position: | chr4:10992225-10992023 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 67, 6 |
| Conread position: | 4-198 |
| Cow position: | chr4:17304421-17304213 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 4-198 |
| Cow position: | chr4:23758780-23758979 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 4-201 |
| Cow position: | chr4:28377687-28377494 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 146, 64 |
| Conread position: | 4-210 |
| Cow position: | chr4:37035263-37035041 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 4-211 |
| Cow position: | chr4:10837408-10837190 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 4-211 |
| Cow position: | chr4:20279300-20279513 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 52, 137 |
| Conread position: | 5-181 |
| Cow position: | chr4:22115582-22115766 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 5-194 |
| Cow position: | chr4:25972873-25973072 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 121 |
| Conread position: | 5-198 |
| Cow position: | chr4:17378864-17378667 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 5-208 |
| Cow position: | chr4:60030879-60031092 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 5-217 |
| Cow position: | chr4:39767327-39767546 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 65, 98 |
| Conread position: | 6-211 |
| Cow position: | chr4:23311287-23311081 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 9-172 |
| Cow position: | chr4:40623120-40622950 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 9-188 |
| Cow position: | chr4:44279959-44279768 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 9-210 |
| Cow position: | chr4:36945216-36945004 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 10-199 |
| Cow position: | chr4:24755546-24755742 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 10-212 |
| Cow position: | chr4:22528405-22528194 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 68, 174 |
| Conread position: | 11-153 |
| Cow position: | chr4:48499801-48499949 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 97 |
| Conread position: | 11-189 |
| Cow position: | chr4:40433923-40433737 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 137 |
| Conread position: | 11-210 |
| Cow position: | chr4:30131319-30131529 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 12-172 |
| Cow position: | chr4:59719589-59719753 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 16-208 |
| Cow position: | chr4:30671426-30671227 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 17-188 |
| Cow position: | chr4:37880920-37881099 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 24-198 |
| Cow position: | chr4:17478303-17478128 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 24-208 |
| Cow position: | chr4:35471314-35471505 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 47, 113 |
| Conread position: | 33-194 |
| Cow position: | chr4:36075756-36075599 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 41-199 |
| Cow position: | chr4:5913326-5913166 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 46-209 |
| Cow position: | chr4:20161466-20161294 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 160 |
| Conread position: | 57-195 |
| Cow position: | chr4:9912289-9912153 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 65-210 |
| Cow position: | chr4:34762290-34762145 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 71-191 |
| Cow position: | chr4:37611235-37611118 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 73-208 |
| Cow position: | chr4:62411906-62412041 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 124, 49 |
| Conread position: | 75-197 |
| Cow position: | chr4:41154837-41154958 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 76-193 |
| Cow position: | chr4:51433466-51433583 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 76-198 |
| Cow position: | chr4:10463871-10463749 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-199 |
| Cow position: | chr4:63417645-63417524 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 76-209 |
| Cow position: | chr4:21037685-21037547 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 76-210 |
| Cow position: | chr4:24187546-24187412 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-194 |
| Cow position: | chr4:392541-392647 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 97-209 |
| Cow position: | chr4:21926465-21926576 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
Show alignments to all cow chromosomes.