Cow genome map
| Conread name: | Emb1-C0005183_N05 |
| Conread position: | 1-144 |
| Cow position: | chr5:54532992-54533142 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 130 |
| Conread position: | 1-166 |
| Cow position: | chr5:18553901-18554072 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 10 |
| Conread position: | 1-182 |
| Cow position: | chr5:30332957-30333146 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 153 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-189 |
| Cow position: | chr5:15837887-15837692 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-194 |
| Cow position: | chr5:58748773-58748975 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 146 |
| Conread position: | 1-194 |
| Cow position: | chr5:69773558-69773750 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 32 |
| Conread position: | 1-198 |
| Cow position: | chr5:21531102-21530897 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 1-199 |
| Cow position: | chr5:39695654-39695863 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 202 |
| Conread position: | 1-199 |
| Cow position: | chr5:58343861-58344073 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 1-203 |
| Cow position: | chr5:50425480-50425268 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 1-208 |
| Cow position: | chr5:41598709-41598491 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 53, 202 |
| Conread position: | 1-208 |
| Cow position: | chr5:41604630-41604847 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 2-194 |
| Cow position: | chr5:23641006-23640811 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 68, 15 |
| Conread position: | 2-194 |
| Cow position: | chr5:34279599-34279405 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 68 |
| Conread position: | 3-194 |
| Cow position: | chr5:45396405-45396205 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 47, 114 |
| Conread position: | 4-184 |
| Cow position: | chr5:63188317-63188133 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 80, 67 |
| Conread position: | 4-194 |
| Cow position: | chr5:3649452-3649256 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 74, 161 |
| Conread position: | 4-194 |
| Cow position: | chr5:67150012-67149810 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 4-195 |
| Cow position: | chr5:64399018-64399212 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 66, 148 |
| Conread position: | 4-198 |
| Cow position: | chr5:51503013-51503218 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 4-207 |
| Cow position: | chr5:49567435-49567640 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 91 |
| Conread position: | 5-194 |
| Cow position: | chr5:38629297-38629494 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 6-193 |
| Cow position: | chr5:40711428-40711240 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 81, 72 |
| Conread position: | 6-209 |
| Cow position: | chr5:41636879-41637088 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 162 |
| Conread position: | 6-213 |
| Cow position: | chr5:27615525-27615741 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-181 |
| Cow position: | chr5:1343841-1343662 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 7-198 |
| Cow position: | chr5:41605793-41605605 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 164 |
| Conread position: | 9-193 |
| Cow position: | chr5:39442308-39442503 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 117 |
| Conread position: | 16-194 |
| Cow position: | chr5:21195100-21194915 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 16-199 |
| Cow position: | chr5:36028126-36027935 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 8 |
| Conread position: | 21-201 |
| Cow position: | chr5:2819284-2819485 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 22-164 |
| Cow position: | chr5:3225948-3225802 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 85 |
| Conread position: | 22-208 |
| Cow position: | chr5:3058947-3059139 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 48, 153 |
| Conread position: | 27-189 |
| Cow position: | chr5:21356857-21356689 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 44-165 |
| Cow position: | chr5:17097761-17097889 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 44-198 |
| Cow position: | chr5:20144428-20144576 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 149, 23 |
| Conread position: | 51-205 |
| Cow position: | chr5:39753591-39753435 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 52-209 |
| Cow position: | chr5:56854149-56853995 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 57-194 |
| Cow position: | chr5:27293599-27293462 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 65-198 |
| Cow position: | chr5:46611021-46610885 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 68-199 |
| Cow position: | chr5:9232043-9231914 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 122, 88 |
| Conread position: | 71-206 |
| Cow position: | chr5:48067783-48067919 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 73-187 |
| Cow position: | chr5:17944210-17944324 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 74-189 |
| Cow position: | chr5:17874193-17874307 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 74-198 |
| Cow position: | chr5:18695248-18695368 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 116, 94 |
| Conread position: | 74-199 |
| Cow position: | chr5:39134172-39134046 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 74-210 |
| Cow position: | chr5:5929547-5929683 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-206 |
| Cow position: | chr5:45028798-45028928 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 76-209 |
| Cow position: | chr5:75687235-75687108 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 76-211 |
| Cow position: | chr5:26370290-26370424 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 77-209 |
| Cow position: | chr5:32939347-32939487 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 79-207 |
| Cow position: | chr5:3438751-3438625 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 70, 37 |
Show alignments to all cow chromosomes.