Cow genome map
| Conread name: | Emb1-C0005183_N05 |
| Conread position: | 1-172 |
| Cow position: | chr6:16733436-16733614 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-177 |
| Cow position: | chr6:1890560-1890373 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 1-189 |
| Cow position: | chr6:31425543-31425343 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 1-193 |
| Cow position: | chr6:7824782-7824967 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-194 |
| Cow position: | chr6:24649873-24650064 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 1-198 |
| Cow position: | chr6:3078531-3078721 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 69 |
| Conread position: | 1-198 |
| Cow position: | chr6:6994935-6994733 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 1-198 |
| Cow position: | chr6:37054006-37054208 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 68, 61 |
| Conread position: | 1-199 |
| Cow position: | chr6:30160342-30160544 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 1-199 |
| Cow position: | chr6:65871906-65872111 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 56, 167 |
| Conread position: | 1-206 |
| Cow position: | chr6:4164150-4163937 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 69, 101 |
| Conread position: | 1-208 |
| Cow position: | chr6:9026540-9026747 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 139 |
| Conread position: | 1-208 |
| Cow position: | chr6:13718780-13719000 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-209 |
| Cow position: | chr6:827686-827470 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 1-210 |
| Cow position: | chr6:24583205-24582997 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 1-214 |
| Cow position: | chr6:55475271-55475495 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 53, 212 |
| Conread position: | 2-194 |
| Cow position: | chr6:56376331-56376131 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 133 |
| Conread position: | 2-208 |
| Cow position: | chr6:52556463-52556265 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 115, 54 |
| Conread position: | 2-211 |
| Cow position: | chr6:2324203-2323984 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 2-211 |
| Cow position: | chr6:24223137-24222920 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 3-211 |
| Cow position: | chr6:18469207-18468991 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 91 |
| Conread position: | 4-180 |
| Cow position: | chr6:10237357-10237541 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 4-187 |
| Cow position: | chr6:24557904-24558092 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 65, 131 |
| Conread position: | 4-191 |
| Cow position: | chr6:54062683-54062881 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 158 |
| Conread position: | 4-193 |
| Cow position: | chr6:47858310-47858510 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 110 |
| Conread position: | 4-194 |
| Cow position: | chr6:12421271-12421068 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 4-197 |
| Cow position: | chr6:28795356-28795558 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 150 |
| Conread position: | 4-198 |
| Cow position: | chr6:6367647-6367448 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 4-208 |
| Cow position: | chr6:3545714-3545913 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 75, 54 |
| Conread position: | 4-212 |
| Cow position: | chr6:15997194-15996981 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 61, 133 |
| Conread position: | 5-194 |
| Cow position: | chr6:43760388-43760575 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 5-195 |
| Cow position: | chr6:53673884-53674083 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 136 |
| Conread position: | 5-197 |
| Cow position: | chr6:19427477-19427670 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 5-200 |
| Cow position: | chr6:8318140-8317942 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 5-204 |
| Cow position: | chr6:38453750-38453550 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 71, 157 |
| Conread position: | 5-205 |
| Cow position: | chr6:52002380-52002583 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 121 |
| Conread position: | 5-208 |
| Cow position: | chr6:46676407-46676195 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 105 |
| Conread position: | 9-206 |
| Cow position: | chr6:28083991-28083778 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 10-198 |
| Cow position: | chr6:16220035-16219833 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 10-207 |
| Cow position: | chr6:15782489-15782278 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 10-209 |
| Cow position: | chr6:54144332-54144551 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 13-199 |
| Cow position: | chr6:35774955-35774756 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 14-208 |
| Cow position: | chr6:36194628-36194827 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 118 |
| Conread position: | 16-194 |
| Cow position: | chr6:47192493-47192304 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 27-210 |
| Cow position: | chr6:30530059-30529886 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 178, 44 |
| Conread position: | 64-205 |
| Cow position: | chr6:25224329-25224474 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 65-198 |
| Cow position: | chr6:60423249-60423115 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 66-206 |
| Cow position: | chr6:59496312-59496446 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 74-204 |
| Cow position: | chr6:21318769-21318636 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 126 |
| Conread position: | 74-208 |
| Cow position: | chr6:53264696-53264566 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 76-194 |
| Cow position: | chr6:28164928-28165046 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-198 |
| Cow position: | chr6:50287673-50287549 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 116, 0 |
Show alignments to all cow chromosomes.