Cow genome map
| Conread name: | Emb1-C0005183_N05 |
| Conread position: | 1-158 |
| Cow position: | chrX:16419154-16419319 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-164 |
| Cow position: | chrX:17042692-17042861 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 1-179 |
| Cow position: | chrX:159752-159566 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 184 |
| Conread position: | 1-193 |
| Cow position: | chrX:6563527-6563725 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 69, 164 |
| Conread position: | 1-193 |
| Cow position: | chrX:18456409-18456608 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-194 |
| Cow position: | chrX:34470722-34470919 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 1-195 |
| Cow position: | chrX:3161025-3160839 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 103, 59 |
| Conread position: | 1-197 |
| Cow position: | chrX:9839232-9839433 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 69, 130 |
| Conread position: | 1-198 |
| Cow position: | chrX:38999859-39000062 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 53, 69 |
| Conread position: | 1-199 |
| Cow position: | chrX:11746849-11747044 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 50, 40 |
| Conread position: | 1-199 |
| Cow position: | chrX:27287729-27287524 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 69, 174 |
| Conread position: | 1-201 |
| Cow position: | chrX:21664716-21664510 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 45, 163 |
| Conread position: | 1-201 |
| Cow position: | chrX:27771569-27771359 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 105 |
| Conread position: | 1-205 |
| Cow position: | chrX:21640433-21640645 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 130 |
| Conread position: | 1-205 |
| Cow position: | chrX:25338191-25338402 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 168 |
| Conread position: | 1-205 |
| Cow position: | chrX:46083974-46084194 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-207 |
| Cow position: | chrX:26940501-26940296 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 191, 77 |
| Conread position: | 1-207 |
| Cow position: | chrX:31602661-31602880 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 177 |
| Conread position: | 1-209 |
| Cow position: | chrX:25713799-25714023 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-211 |
| Cow position: | chrX:22326124-22326341 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 3-189 |
| Cow position: | chrX:33802998-33802804 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 4-203 |
| Cow position: | chrX:34355959-34355756 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 122 |
| Conread position: | 5-197 |
| Cow position: | chrX:630302-630089 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 5-198 |
| Cow position: | chrX:36009905-36009703 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 164 |
| Conread position: | 5-208 |
| Cow position: | chrX:16514254-16514050 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 5-209 |
| Cow position: | chrX:9539334-9539545 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 126 |
| Conread position: | 6-197 |
| Cow position: | chrX:41083923-41084128 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 182 |
| Conread position: | 9-194 |
| Cow position: | chrX:23414357-23414167 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 9-196 |
| Cow position: | chrX:40789223-40789414 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 9-198 |
| Cow position: | chrX:7425481-7425677 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 190 |
| Conread position: | 10-206 |
| Cow position: | chrX:12304573-12304778 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 145 |
| Conread position: | 11-184 |
| Cow position: | chrX:23179266-23179083 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 131 |
| Conread position: | 16-193 |
| Cow position: | chrX:26619095-26618910 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 134 |
| Conread position: | 16-205 |
| Cow position: | chrX:33585521-33585711 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 16-217 |
| Cow position: | chrX:36840885-36841091 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 116 |
| Conread position: | 17-190 |
| Cow position: | chrX:15329662-15329847 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 19-167 |
| Cow position: | chrX:4446731-4446885 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 51, 121 |
| Conread position: | 25-198 |
| Cow position: | chrX:29056334-29056501 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 44-187 |
| Cow position: | chrX:5046866-5046712 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 64-208 |
| Cow position: | chrX:20344237-20344100 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 68-208 |
| Cow position: | chrX:25602412-25602552 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 73-190 |
| Cow position: | chrX:29675586-29675704 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 73-196 |
| Cow position: | chrX:4414432-4414552 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 75-194 |
| Cow position: | chrX:4545264-4545147 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 76-189 |
| Cow position: | chrX:488769-488879 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 76-197 |
| Cow position: | chrX:10302432-10302549 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 76-198 |
| Cow position: | chrX:31273293-31273415 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-207 |
| Cow position: | chrX:46028671-46028539 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 78-214 |
| Cow position: | chrX:18417212-18417072 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 101, 79 |
Show alignments to all cow chromosomes.