Cow genome map
| Conread name: | Emb1-C0005186_G17 |
| Conread position: | 5-424 |
| Cow position: | chr22:11641033-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 137, 238 |
| Conread position: | 5-425 |
| Cow position: | chr22:12475710-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 271 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 5-425 |
| Cow position: | chr22:12499549-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 5-433 |
| Cow position: | chr22:12385407-12384976 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 112, 238 |
| Conread position: | 5-433 |
| Cow position: | chr22:12431901-12431470 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 5-443 |
| Cow position: | chr22:11640950-11641390 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 5-443 |
| Cow position: | chr22:12385323-12384883 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 5-443 |
| Cow position: | chr22:12385493-12385050 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 5-443 |
| Cow position: | chr22:12399333-12398892 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 5-443 |
| Cow position: | chr22:12399417-12398976 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 5-443 |
| Cow position: | chr22:12399585-12399144 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 385 |
| Conread position: | 5-443 |
| Cow position: | chr22:12399669-12399228 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 5-443 |
| Cow position: | chr22:12431061-12430620 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 113, 207 |
| Conread position: | 5-443 |
| Cow position: | chr22:12431313-12430872 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 113, 383 |
| Conread position: | 5-443 |
| Cow position: | chr22:12431481-12431040 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 81 |
| Conread position: | 5-443 |
| Cow position: | chr22:12431649-12431208 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 113, 233 |
| Conread position: | 5-443 |
| Cow position: | chr22:12431985-12431544 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 121, 229 |
| Conread position: | 5-443 |
| Cow position: | chr22:12432069-12431628 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 129, 206 |
| Conread position: | 5-443 |
| Cow position: | chr22:12432321-12431880 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 5-443 |
| Cow position: | chr22:12432405-12431964 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 5-443 |
| Cow position: | chr22:12458517-12458076 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 116, 173 |
| Conread position: | 5-443 |
| Cow position: | chr22:12475794-12475353 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 42, 54 |
| Conread position: | 5-443 |
| Cow position: | chr22:12475962-12475521 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 293 |
| Conread position: | 5-443 |
| Cow position: | chr22:12476130-12475689 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 112, 293 |
| Conread position: | 5-443 |
| Cow position: | chr22:12476298-12475857 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 5-443 |
| Cow position: | chr22:12498961-12499402 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 111, 276 |
| Conread position: | 5-443 |
| Cow position: | chr22:12499129-12499570 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 99, 293 |
| Conread position: | 5-443 |
| Cow position: | chr22:12499297-12499738 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 280 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 112, 292 |
| Conread position: | 6-443 |
| Cow position: | chr22:12431816-12431376 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 7-419 |
| Cow position: | chr22:12458179-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-443 |
| Cow position: | chr22:11640615-11641054 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 285 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 8-443 |
| Cow position: | chr22:12385574-12385134 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 134, 206 |
| Conread position: | 8-443 |
| Cow position: | chr22:12458346-12457908 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 8-443 |
| Cow position: | chr22:12458598-12458160 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 8-443 |
| Cow position: | chr22:12476379-12475941 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 108, 148 |
| Conread position: | 8-443 |
| Cow position: | chr22:12498880-12499318 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 279 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 108, 148 |
| Conread position: | 8-443 |
| Cow position: | chr22:14429824-14430262 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 127, 257 |
| Conread position: | 12-433 |
| Cow position: | chr22:12431390-12430966 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 109, 194 |
| Conread position: | 12-442 |
| Cow position: | chr22:12431138-12430705 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 106, 206 |
| Conread position: | 20-442 |
| Cow position: | chr22:11640796-11641221 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 50 |
| Conread position: | 81-443 |
| Cow position: | chr22:12432497-12432132 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 44, 160 |
| Conread position: | 89-443 |
| Cow position: | chr22:11701276-11701633 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 129 |
| Conread position: | 123-441 |
| Cow position: | chr22:11640818-11641136 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 190, 184 |
| Conread position: | 128-443 |
| Cow position: | chr22:12399795-12399480 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 140-435 |
| Cow position: | chr22:12498847-12499142 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-443 |
| Cow position: | chr22:12385691-12385386 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 142-443 |
| Cow position: | chr22:12499605-12499906 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 142-443 |
| Cow position: | chr22:46654328-46654629 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 78, 66 |
| Conread position: | 143-443 |
| Cow position: | chr22:12399696-12399396 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 217 |
| Conread position: | 143-443 |
| Cow position: | chr22:12458124-12457824 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-443 |
| Cow position: | chr22:12499522-12499822 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 184-443 |
| Cow position: | chr22:12399901-12399648 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 62 |
| Conread position: | 185-435 |
| Cow position: | chr22:12399822-12399572 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 112, 102 |
| Conread position: | 190-443 |
| Cow position: | chr22:14467919-14468171 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 204, 44 |
| Conread position: | 199-443 |
| Cow position: | chr22:12385716-12385472 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 62, 46 |
| Conread position: | 217-443 |
| Cow position: | chr22:12476419-12476193 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-443 |
| Cow position: | chr22:12498840-12499066 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 231-443 |
| Cow position: | chr22:12419311-12419100 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 247-443 |
| Cow position: | chr22:12399923-12399732 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 84 |
| Conread position: | 248-443 |
| Cow position: | chr22:14429815-14430010 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 250-443 |
| Cow position: | chr22:12419024-12418831 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.