Cow genome map

Conread name: Emb1-C0005186_G17

Conread position: 3-435
Cow position: chr25:34433446-34433876 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 258
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 7, 43

Conread position: 4-421
Cow position: chr25:34447447-34447858 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 259
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 115, 254

Conread position: 5-375
Cow position: chr25:34433530-34433900 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 236
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 117, 76

Conread position: 5-390
Cow position: chr25:23420473-23420861 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 244
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 112, 0

Conread position: 5-400
Cow position: chr25:33145023-33145418 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 240
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 112, 15

Conread position: 5-417
Cow position: chr25:33127808-33128223 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 266
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 112, 0

Conread position: 5-426
Cow position: chr25:34447280-34447704 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 261
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 116, 0

Conread position: 5-434
Cow position: chr25:33299409-33299837 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 207

Conread position: 5-434
Cow position: chr25:36801549-36801977 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 263
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 113, 407

Conread position: 5-435
Cow position: chr25:33157215-33156783 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 272
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 112, 238

Conread position: 5-435
Cow position: chr25:33305313-33304884 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 280
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 116, 203

Conread position: 5-436
Cow position: chr25:33305396-33304966 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 281
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 111, 80

Conread position: 5-441
Cow position: chr25:36800805-36801244 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 275
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 42, 59

Conread position: 5-443
Cow position: chr25:23420389-23420830 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 281
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 37, 53

Conread position: 5-443
Cow position: chr25:33157299-33156858 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 278
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 99, 110

Conread position: 5-443
Cow position: chr25:33157383-33156942 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 283
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 46, 59

Conread position: 5-443
Cow position: chr25:33298569-33299010 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 5-443
Cow position: chr25:33298821-33299262 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 276
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 107, 0

Conread position: 5-443
Cow position: chr25:33299073-33299514 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 5-443
Cow position: chr25:33299241-33299682 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 208

Conread position: 5-443
Cow position: chr25:33299325-33299766 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 280
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 113, 0

Conread position: 5-443
Cow position: chr25:33305874-33305438 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 24

Conread position: 5-443
Cow position: chr25:33306372-33305937 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 272
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 116, 25

Conread position: 5-443
Cow position: chr25:34447112-34447553 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 277
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 112, 0

Conread position: 5-443
Cow position: chr25:34447196-34447637 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 268
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 112, 289

Conread position: 5-443
Cow position: chr25:34714040-34714481 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 276
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 64, 85

Conread position: 5-443
Cow position: chr25:34769698-34769257 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 59

Conread position: 5-443
Cow position: chr25:34769782-34769341 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 85

Conread position: 5-443
Cow position: chr25:34769866-34769425 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 118, 0

Conread position: 5-443
Cow position: chr25:34770034-34769593 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 281
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 0

Conread position: 5-443
Cow position: chr25:36800638-36801078 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 5

Conread position: 5-443
Cow position: chr25:36800721-36801162 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 282
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 107, 384

Conread position: 5-443
Cow position: chr25:36800889-36801330 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 274
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 112, 294

Conread position: 8-443
Cow position: chr25:36801468-36801906 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 9-443
Cow position: chr25:33157463-33157026 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 368

Conread position: 13-443
Cow position: chr25:33127732-33128165 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 272
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 104, 349

Conread position: 17-443
Cow position: chr25:34446956-34447385 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 265
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 34, 47

Conread position: 18-443
Cow position: chr25:34446873-34447301 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 264
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 47, 81

Conread position: 19-443
Cow position: chr25:36801155-36801570 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 261
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 29, 24

Conread position: 30-409
Cow position: chr25:326444-326826 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 233
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 27

Conread position: 38-443
Cow position: chr25:33305441-33305043 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 271
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 86, 19

Conread position: 62-376
Cow position: chr25:18642192-18641872 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 203
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 49, 66

Conread position: 65-434
Cow position: chr25:33306396-33306029 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 242
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 92, 109

Conread position: 82-443
Cow position: chr25:33298562-33298926 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 140

Conread position: 84-441
Cow position: chr25:36800464-36800824 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 243
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 27, 47

Conread position: 120-443
Cow position: chr25:34770168-34769845 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 211
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 125-434
Cow position: chr25:23420344-23420653 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 125-443
Cow position: chr25:33299028-33299346 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 128-409
Cow position: chr25:366773-367054 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 179
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 138, 145

Conread position: 128-426
Cow position: chr25:346496-346794 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 190
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 138, 145

Conread position: 128-433
Cow position: chr25:33306822-33306531 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 28, 0

Conread position: 128-441
Cow position: chr25:33127766-33128079 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 133-443
Cow position: chr25:23420436-23420746 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 59, 77

Conread position: 139-443
Cow position: chr25:36800606-36800910 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 142-422
Cow position: chr25:326985-327265 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 181
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 53, 71

Conread position: 142-443
Cow position: chr25:34770062-34769761 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 201
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 143-441
Cow position: chr25:33157494-33157196 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 197
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 56, 67

Conread position: 155-434
Cow position: chr25:33298470-33298749 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 41, 55

Conread position: 167-443
Cow position: chr25:33306044-33305771 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 101

Conread position: 167-443
Cow position: chr25:33306375-33306108 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 183
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 167-443
Cow position: chr25:34446857-34447133 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 180
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 102, 90

Conread position: 179-443
Cow position: chr25:23420314-23420578 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 223-426
Cow position: chr25:22235888-22236091 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 139
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 246-443
Cow position: chr25:326920-327118 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 11, 23

Conread position: 248-438
Cow position: chr25:34433020-34433211 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 187, 0

Conread position: 248-443
Cow position: chr25:33298479-33298674 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.