Cow genome map

Conread name: Emb1-C0005186_P05

Conread position: 1-144
Cow position: chr26:21637057-21636915 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 134, 0

Conread position: 1-145
Cow position: chr26:2739474-2739331 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 19

Conread position: 1-145
Cow position: chr26:13021168-13021021 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 1-228
Cow position: chr26:31633708-31633934 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 169, 143

Conread position: 1-229
Cow position: chr26:5836844-5836614 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 8, 149

Conread position: 1-230
Cow position: chr26:4585231-4585007 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 8, 82

Conread position: 1-230
Cow position: chr26:9535498-9535718 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 107, 0

Conread position: 1-230
Cow position: chr26:9604542-9604760 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 206, 134

Conread position: 1-231
Cow position: chr26:12893448-12893224 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 10, 120

Conread position: 1-231
Cow position: chr26:16435675-16435445 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 159, 16

Conread position: 1-231
Cow position: chr26:18529769-18529993 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 159, 11

Conread position: 1-231
Cow position: chr26:19636269-19636495 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 150

Conread position: 1-255
Cow position: chr26:30128023-30127768 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 212

Conread position: 1-266
Cow position: chr26:22033465-22033716 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 59, 11

Conread position: 2-229
Cow position: chr26:14481570-14481363 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 2-248
Cow position: chr26:25526230-25526472 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 165
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 230, 142

Conread position: 2-258
Cow position: chr26:18825306-18825051 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 10, 20

Conread position: 3-225
Cow position: chr26:34724889-34724675 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 58, 0

Conread position: 3-231
Cow position: chr26:1328877-1328660 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 12, 119

Conread position: 4-231
Cow position: chr26:23924833-23925049 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 154, 0

Conread position: 4-253
Cow position: chr26:12145135-12144893 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 142, 0

Conread position: 4-257
Cow position: chr26:9491908-9492151 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 11, 39

Conread position: 5-174
Cow position: chr26:33392379-33392542 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 5-230
Cow position: chr26:6714316-6714094 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 177, 52

Conread position: 5-257
Cow position: chr26:34060316-34060567 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 168
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 7, 155

Conread position: 6-145
Cow position: chr26:26537538-26537395 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 6-230
Cow position: chr26:12964707-12964477 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 141, 10

Conread position: 6-230
Cow position: chr26:21418470-21418248 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 103

Conread position: 6-231
Cow position: chr26:8307543-8307326 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 144, 0

Conread position: 6-298
Cow position: chr26:7314607-7314900 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 153, 223

Conread position: 7-231
Cow position: chr26:20825129-20824917 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 7-231
Cow position: chr26:26888147-26887932 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 106, 0

Conread position: 7-231
Cow position: chr26:29889525-29889309 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 150
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 8-145
Cow position: chr26:107012-107150 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 107, 0

Conread position: 8-222
Cow position: chr26:24240667-24240880 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 154, 65

Conread position: 8-228
Cow position: chr26:19446121-19446340 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 44

Conread position: 9-231
Cow position: chr26:19591471-19591684 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 137, 0

Conread position: 10-142
Cow position: chr26:17651948-17652081 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 11-157
Cow position: chr26:13292509-13292655 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 11-230
Cow position: chr26:34027045-34026829 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 28

Conread position: 11-231
Cow position: chr26:647733-647517 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 44, 0

Conread position: 12-170
Cow position: chr26:34154125-34154282 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 134, 0

Conread position: 12-228
Cow position: chr26:28423278-28423488 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 50, 0

Conread position: 12-231
Cow position: chr26:20291701-20291487 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 0

Conread position: 12-231
Cow position: chr26:31137473-31137260 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 97, 62

Conread position: 12-238
Cow position: chr26:11875230-11875012 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 134, 0

Conread position: 13-170
Cow position: chr26:31605396-31605550 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 11, 135

Conread position: 13-231
Cow position: chr26:26950459-26950256 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 7, 45

Conread position: 13-260
Cow position: chr26:33253324-33253085 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 166
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 67

Conread position: 14-145
Cow position: chr26:18741064-18740933 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 14-163
Cow position: chr26:8700054-8699903 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 126, 0

Conread position: 14-170
Cow position: chr26:677987-677836 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 132, 0

Conread position: 14-225
Cow position: chr26:22892452-22892248 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 132, 0

Conread position: 14-228
Cow position: chr26:13802106-13802311 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 41, 0

Conread position: 14-230
Cow position: chr26:20769844-20770055 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 132, 0

Conread position: 14-231
Cow position: chr26:7687252-7687037 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 155, 135

Conread position: 14-231
Cow position: chr26:32897876-32897674 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 14-231
Cow position: chr26:34560175-34559966 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 37

Conread position: 14-235
Cow position: chr26:7212593-7212354 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 14-253
Cow position: chr26:4854538-4854774 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 218, 91

Conread position: 14-260
Cow position: chr26:6794138-6794381 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 163
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 115, 103

Conread position: 14-260
Cow position: chr26:28251146-28251386 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 47, 135

Conread position: 14-260
Cow position: chr26:32830074-32830319 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 162
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 225, 103

Conread position: 14-260
Cow position: chr26:33202077-33201838 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 233, 132

Conread position: 14-260
Cow position: chr26:34611188-34610947 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 213, 132

Conread position: 14-261
Cow position: chr26:12940393-12940645 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 139, 201

Conread position: 14-278
Cow position: chr26:14175275-14175542 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 133, 203

Conread position: 15-145
Cow position: chr26:5666042-5666173 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 15-225
Cow position: chr26:27491504-27491296 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 145, 59

Conread position: 15-229
Cow position: chr26:35704382-35704577 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 16-162
Cow position: chr26:33241884-33242025 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 124
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 130, 0

Conread position: 16-231
Cow position: chr26:7148310-7148095 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 145
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 142, 117

Conread position: 17-231
Cow position: chr26:19671474-19671683 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 20-256
Cow position: chr26:31173271-31173506 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 163
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 32, 17

Conread position: 23-231
Cow position: chr26:31888735-31888935 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 0

Conread position: 25-143
Cow position: chr26:23315777-23315896 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 25-229
Cow position: chr26:9501713-9501913 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 26-145
Cow position: chr26:32361979-32362099 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 34-175
Cow position: chr26:28409998-28410133 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 40-229
Cow position: chr26:15132656-15132844 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 87, 96

Conread position: 41-231
Cow position: chr26:6823179-6823365 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 119, 46

Conread position: 43-231
Cow position: chr26:16585457-16585633 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 116, 0

Conread position: 43-256
Cow position: chr26:28202737-28202524 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 141
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 206, 102

Conread position: 45-252
Cow position: chr26:13863010-13862812 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 45-259
Cow position: chr26:33038199-33037992 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 101, 0

Conread position: 46-250
Cow position: chr26:9099507-9099310 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 46-260
Cow position: chr26:6487766-6487558 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 101, 0

Conread position: 47-231
Cow position: chr26:27482537-27482357 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 49-231
Cow position: chr26:8811500-8811680 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 38

Conread position: 57-260
Cow position: chr26:12028200-12028000 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 6

Conread position: 60-230
Cow position: chr26:29901022-29900856 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 112, 0

Conread position: 60-231
Cow position: chr26:33112347-33112180 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 68, 88

Conread position: 60-252
Cow position: chr26:10700864-10700677 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 84, 0

Conread position: 67-260
Cow position: chr26:21319992-21320180 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 80, 0

Conread position: 69-224
Cow position: chr26:29897235-29897382 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 77, 0

Conread position: 69-250
Cow position: chr26:31712020-31711841 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 91, 62

Conread position: 88-225
Cow position: chr26:13292738-13292873 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 90-231
Cow position: chr26:13022531-13022668 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 101-230
Cow position: chr26:5307196-5307323 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Show alignments to all cow chromosomes.