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Cow genome map

           
Conread name:
           
Emb1-C0005188_E08
        

               
Conread position:
               
2-185
               

               
Cow position:
               
chr1:17941487-17941303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr1:86698915-86698737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chr1:82923877-82923696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
12-186
               

               
Cow position:
               
chr1:88269900-88269724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
24-183
               

               
Cow position:
               
chr1:21720534-21720694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
24-183
               

               
Cow position:
               
chr1:62244323-62244162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
24-183
               

               
Cow position:
               
chr1:99913741-99913901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
125, 25
               

               
Conread position:
               
27-183
               

               
Cow position:
               
chr1:52358950-52358795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
31-153
               

               
Cow position:
               
chr1:38387028-38386900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 107
               

               
Conread position:
               
32-185
               

               
Cow position:
               
chr1:40512715-40512562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
34-168
               

               
Cow position:
               
chr1:55321808-55321674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 123
               

               
Conread position:
               
34-182
               

               
Cow position:
               
chr1:31418184-31418035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
46-177
               

               
Cow position:
               
chr1:67327920-67327787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 129
               

               
Conread position:
               
90-433
               

               
Cow position:
               
chr1:53622603-53622946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
95, 81
               

               
Conread position:
               
139-409
               

               
Cow position:
               
chr1:31871106-31871389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
141, 11
               

               
Conread position:
               
141-431
               

               
Cow position:
               
chr1:21954535-21954247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
5, 54
               

               
Conread position:
               
142-381
               

               
Cow position:
               
chr1:57957171-57956928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
142-413
               

               
Cow position:
               
chr1:6321891-6322172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 63
               

               
Conread position:
               
142-432
               

               
Cow position:
               
chr1:78783233-78783533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
142-433
               

               
Cow position:
               
chr1:71045438-71045743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
142-446
               

               
Cow position:
               
chr1:101713802-101714115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
143-461
               

               
Cow position:
               
chr1:41056372-41056687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
146-433
               

               
Cow position:
               
chr1:68827217-68826916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
136, 90
               

               
Conread position:
               
156-433
               

               
Cow position:
               
chr1:1956627-1956348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
161-454
               

               
Cow position:
               
chr1:92437283-92436987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
163-416
               

               
Cow position:
               
chr1:69678623-69678359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
163-433
               

               
Cow position:
               
chr1:37309798-37309531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
163-433
               

               
Cow position:
               
chr1:81869021-81868741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
165-430
               

               
Cow position:
               
chr1:53613485-53613212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
166-452
               

               
Cow position:
               
chr1:91800900-91800599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
168-457
               

               
Cow position:
               
chr1:40599768-40600050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
122, 31
               

               
Conread position:
               
169-361
               

               
Cow position:
               
chr1:39718725-39718927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 16
               

               
Conread position:
               
171-431
               

               
Cow position:
               
chr1:87216168-87216443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
172-357
               

               
Cow position:
               
chr1:100132588-100132773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
172-404
               

               
Cow position:
               
chr1:57305551-57305790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
172-405
               

               
Cow position:
               
chr1:71748287-71748050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
172-408
               

               
Cow position:
               
chr1:73584696-73584448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
172-413
               

               
Cow position:
               
chr1:31341334-31341081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
172-433
               

               
Cow position:
               
chr1:61725393-61725126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
111, 27
               

               
Conread position:
               
172-438
               

               
Cow position:
               
chr1:97622482-97622219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-340
               

               
Cow position:
               
chr1:72813136-72813298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
108, 31
               

               
Conread position:
               
173-344
               

               
Cow position:
               
chr1:81579480-81579657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
173-347
               

               
Cow position:
               
chr1:13056809-13056635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 32
               

               
Conread position:
               
173-347
               

               
Cow position:
               
chr1:58889574-58889403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
173-348
               

               
Cow position:
               
chr1:55020208-55020374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
173-349
               

               
Cow position:
               
chr1:89834956-89835126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
173-349
               

               
Cow position:
               
chr1:96018993-96019160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
173-350
               

               
Cow position:
               
chr1:2317918-2317741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
173-367
               

               
Cow position:
               
chr1:5990635-5990826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 32
               

               
Conread position:
               
173-371
               

               
Cow position:
               
chr1:60665214-60665415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
107, 26
               

               
Conread position:
               
173-377
               

               
Cow position:
               
chr1:11772360-11772150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 25
               

               
Conread position:
               
173-377
               

               
Cow position:
               
chr1:42256789-42256579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
173-377
               

               
Cow position:
               
chr1:68282515-68282726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
173-377
               

               
Cow position:
               
chr1:71325526-71325323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
173-386
               

               
Cow position:
               
chr1:12222884-12222671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
173-389
               

               
Cow position:
               
chr1:40062169-40062388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
173-396
               

               
Cow position:
               
chr1:43893649-43893866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
91, 26
               

               
Conread position:
               
173-399
               

               
Cow position:
               
chr1:80336529-80336291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
173-405
               

               
Cow position:
               
chr1:51980948-51981183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
173-405
               

               
Cow position:
               
chr1:78091753-78091995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
173-405
               

               
Cow position:
               
chr1:82861494-82861741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
173-409
               

               
Cow position:
               
chr1:55260709-55260467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-412
               

               
Cow position:
               
chr1:42053604-42053366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 25
               

               
Conread position:
               
173-413
               

               
Cow position:
               
chr1:93499343-93499591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
173-415
               

               
Cow position:
               
chr1:53207974-53207728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
173-416
               

               
Cow position:
               
chr1:50634694-50634430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
173-416
               

               
Cow position:
               
chr1:85361576-85361831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 31
               

               
Conread position:
               
173-420
               

               
Cow position:
               
chr1:20521963-20521716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
173-424
               

               
Cow position:
               
chr1:33811655-33811906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
173-425
               

               
Cow position:
               
chr1:18937112-18936855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-425
               

               
Cow position:
               
chr1:53374155-53374411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
173-425
               

               
Cow position:
               
chr1:91066427-91066173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
173-428
               

               
Cow position:
               
chr1:61392072-61391804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
173-429
               

               
Cow position:
               
chr1:35162125-35162393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 26
               

               
Conread position:
               
173-430
               

               
Cow position:
               
chr1:44094735-44094489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
173-431
               

               
Cow position:
               
chr1:73561928-73561665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
108, 31
               

               
Conread position:
               
173-431
               

               
Cow position:
               
chr1:79590821-79591093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
106, 26
               

               
Conread position:
               
173-431
               

               
Cow position:
               
chr1:85596667-85596926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
173-431
               

               
Cow position:
               
chr1:101634422-101634687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
106, 23
               

               
Conread position:
               
173-433
               

               
Cow position:
               
chr1:1877747-1878016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
173-433
               

               
Cow position:
               
chr1:15547190-15547460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
173-433
               

               
Cow position:
               
chr1:63435082-63434818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
173-433
               

               
Cow position:
               
chr1:69264543-69264798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
117, 26
               

               
Conread position:
               
173-433
               

               
Cow position:
               
chr1:102647548-102647285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
173-434
               

               
Cow position:
               
chr1:76019959-76019709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
190, 25
               

               
Conread position:
               
173-435
               

               
Cow position:
               
chr1:91039438-91039184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
120, 19
               

               
Conread position:
               
173-436
               

               
Cow position:
               
chr1:52753445-52753176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-437
               

               
Cow position:
               
chr1:53397705-53397977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
173-438
               

               
Cow position:
               
chr1:36997918-36998183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
173-438
               

               
Cow position:
               
chr1:51968191-51968454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
173-440
               

               
Cow position:
               
chr1:197287-197012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
173-440
               

               
Cow position:
               
chr1:20384904-20384627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
173-446
               

               
Cow position:
               
chr1:46885815-46886094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
108, 25
               

               
Conread position:
               
173-446
               

               
Cow position:
               
chr1:58419645-58419938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
173-447
               

               
Cow position:
               
chr1:60032877-60032596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
173-448
               

               
Cow position:
               
chr1:11226524-11226243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-450
               

               
Cow position:
               
chr1:42874226-42873947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-450
               

               
Cow position:
               
chr1:74822171-74822452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
173-450
               

               
Cow position:
               
chr1:96365395-96365669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
173-452
               

               
Cow position:
               
chr1:7350259-7350548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
109, 23
               

               
Conread position:
               
173-456
               

               
Cow position:
               
chr1:92963111-92963404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
173-460
               

               
Cow position:
               
chr1:99136709-99136421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr1:1991709-1991409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr1:48105715-48105421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr1:52039358-52039647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr1:73960421-73960712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr1:77620267-77620555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
102, 25
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr1:82936861-82936588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
112, 26
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr1:84812229-84811930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
28, 105
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr1:88652352-88652640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
173-469
               

               
Cow position:
               
chr1:22448863-22448564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-469
               

               
Cow position:
               
chr1:53308671-53308372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
173-469
               

               
Cow position:
               
chr1:101551178-101551481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
106, 32
               

               
Conread position:
               
174-366
               

               
Cow position:
               
chr1:15028398-15028592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
175-388
               

               
Cow position:
               
chr1:6939920-6939705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 16
               

               
Conread position:
               
176-366
               

               
Cow position:
               
chr1:79844193-79844376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
176-401
               

               
Cow position:
               
chr1:88338421-88338644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
106, 23
               

               
Conread position:
               
176-409
               

               
Cow position:
               
chr1:67014108-67014346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
176-420
               

               
Cow position:
               
chr1:68217636-68217390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
176-420
               

               
Cow position:
               
chr1:94211958-94212205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
176-431
               

               
Cow position:
               
chr1:25183847-25184116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
176-446
               

               
Cow position:
               
chr1:101007891-101007618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
193, 16
               

               
Conread position:
               
176-447
               

               
Cow position:
               
chr1:33719838-33720120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
103, 23
               

               
Conread position:
               
176-452
               

               
Cow position:
               
chr1:77462088-77462364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
44, 23
               

               
Conread position:
               
176-457
               

               
Cow position:
               
chr1:4290869-4291171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
176-459
               

               
Cow position:
               
chr1:20204749-20205037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
176-469
               

               
Cow position:
               
chr1:81228607-81228317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
106, 23
               

               
Conread position:
               
177-375
               

               
Cow position:
               
chr1:80973898-80973692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
177-397
               

               
Cow position:
               
chr1:55686494-55686274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
177-412
               

               
Cow position:
               
chr1:43211503-43211732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
177-426
               

               
Cow position:
               
chr1:90640750-90641011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
177-430
               

               
Cow position:
               
chr1:91142430-91142171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
177-433
               

               
Cow position:
               
chr1:3137647-3137915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
177-446
               

               
Cow position:
               
chr1:90868713-90868439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
177-449
               

               
Cow position:
               
chr1:102266546-102266264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
181-336
               

               
Cow position:
               
chr1:101792370-101792215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
181-428
               

               
Cow position:
               
chr1:22826895-22827137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
109, 28
               

               
Conread position:
               
182-420
               

               
Cow position:
               
chr1:81180258-81179997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
182-431
               

               
Cow position:
               
chr1:3323581-3323850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
184-441
               

               
Cow position:
               
chr1:12596175-12595907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
106, 80
               

               
Conread position:
               
185-377
               

               
Cow position:
               
chr1:33716950-33717152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
185-437
               

               
Cow position:
               
chr1:82370478-82370729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 80
               

               
Conread position:
               
186-433
               

               
Cow position:
               
chr1:39069224-39068968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
5, 86
               

               
Conread position:
               
187-366
               

               
Cow position:
               
chr1:85783255-85783437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 49
               

               
Conread position:
               
190-438
               

               
Cow position:
               
chr1:74947383-74947131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
153, 8
               

               
Conread position:
               
191-416
               

               
Cow position:
               
chr1:68818063-68817828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
191-419
               

               
Cow position:
               
chr1:71818726-71818484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
191-469
               

               
Cow position:
               
chr1:6165984-6166264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
192-349
               

               
Cow position:
               
chr1:52510509-52510347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 79
               

               
Conread position:
               
192-387
               

               
Cow position:
               
chr1:56748324-56748526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
192-416
               

               
Cow position:
               
chr1:70534200-70533970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
192-425
               

               
Cow position:
               
chr1:6941200-6941443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
192-425
               

               
Cow position:
               
chr1:6958613-6958856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
192-425
               

               
Cow position:
               
chr1:11770558-11770314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
192-433
               

               
Cow position:
               
chr1:34685927-34686178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:32244665-32244409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
78, 70
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:5162319-5162048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
192-469
               

               
Cow position:
               
chr1:45535436-45535724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
84, 51
               

               
Conread position:
               
192-469
               

               
Cow position:
               
chr1:74084455-74084171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
79, 43
               

               
Conread position:
               
193-377
               

               
Cow position:
               
chr1:52913125-52912952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
193-377
               

               
Cow position:
               
chr1:96713079-96712887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 78
               

               
Conread position:
               
193-425
               

               
Cow position:
               
chr1:36931893-36932135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
193-433
               

               
Cow position:
               
chr1:76470394-76470643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
150, 78
               

               
Conread position:
               
197-361
               

               
Cow position:
               
chr1:3872590-3872758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 75
               

               
Conread position:
               
199-329
               

               
Cow position:
               
chr1:33081283-33081148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 72
               

               
Conread position:
               
199-356
               

               
Cow position:
               
chr1:30882574-30882413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
199-419
               

               
Cow position:
               
chr1:52506803-52506581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
171, 47
               

               
Conread position:
               
199-431
               

               
Cow position:
               
chr1:4374597-4374355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
199-432
               

               
Cow position:
               
chr1:51394160-51394403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
70, 126
               

               
Conread position:
               
199-451
               

               
Cow position:
               
chr1:64251308-64251048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
199-461
               

               
Cow position:
               
chr1:37322265-37321989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 156
               

               
Conread position:
               
200-396
               

               
Cow position:
               
chr1:72141306-72141512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
200-420
               

               
Cow position:
               
chr1:95050352-95050119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 21
               

               
Conread position:
               
200-430
               

               
Cow position:
               
chr1:61350889-61351129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
79, 71
               

               
Conread position:
               
200-431
               

               
Cow position:
               
chr1:54478064-54478311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
200-435
               

               
Cow position:
               
chr1:19545353-19545110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
200-449
               

               
Cow position:
               
chr1:75744602-75744867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
81, 74
               

               
Conread position:
               
201-342
               

               
Cow position:
               
chr1:33997169-33997019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
202-450
               

               
Cow position:
               
chr1:80764791-80764530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
78, 69
               

               
Conread position:
               
204-433
               

               
Cow position:
               
chr1:3776868-3776630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
78, 67
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr1:11914131-11913870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
205-375
               

               
Cow position:
               
chr1:79465526-79465706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
205-377
               

               
Cow position:
               
chr1:37646254-37646081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
205-409
               

               
Cow position:
               
chr1:92370612-92370395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
205-412
               

               
Cow position:
               
chr1:95327406-95327184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
75, 156
               

               
Conread position:
               
205-425
               

               
Cow position:
               
chr1:23634153-23633931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 33
               

               
Conread position:
               
205-429
               

               
Cow position:
               
chr1:102826066-102825834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
205-430
               

               
Cow position:
               
chr1:68845733-68845502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
205-431
               

               
Cow position:
               
chr1:55163669-55163901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
77, 66
               

               
Conread position:
               
205-431
               

               
Cow position:
               
chr1:98562907-98563148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 61
               

               
Conread position:
               
205-433
               

               
Cow position:
               
chr1:1165347-1165587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
25, 67
               

               
Conread position:
               
205-433
               

               
Cow position:
               
chr1:46940115-46939870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
77, 66
               

               
Conread position:
               
205-433
               

               
Cow position:
               
chr1:84116149-84116384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
205-442
               

               
Cow position:
               
chr1:89937616-89937360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
205-448
               

               
Cow position:
               
chr1:47543418-47543665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 66
               

               
Conread position:
               
205-452
               

               
Cow position:
               
chr1:61564538-61564799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
205-461
               

               
Cow position:
               
chr1:22728794-22729065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
71, 150
               

               
Conread position:
               
206-340
               

               
Cow position:
               
chr1:57541753-57541614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 65
               

               
Conread position:
               
206-347
               

               
Cow position:
               
chr1:54294914-54294763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
206-348
               

               
Cow position:
               
chr1:4026933-4027082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
76, 21
               

               
Conread position:
               
206-360
               

               
Cow position:
               
chr1:19516658-19516498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
206-361
               

               
Cow position:
               
chr1:3076643-3076490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-361
               

               
Cow position:
               
chr1:61742220-61742061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
206-377
               

               
Cow position:
               
chr1:22628891-22628714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
206-377
               

               
Cow position:
               
chr1:36613527-36613351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-378
               

               
Cow position:
               
chr1:24201991-24201822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
161, 65
               

               
Conread position:
               
206-384
               

               
Cow position:
               
chr1:64160089-64160271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
206-405
               

               
Cow position:
               
chr1:31765647-31765427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
206-405
               

               
Cow position:
               
chr1:64678445-64678655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-405
               

               
Cow position:
               
chr1:83982629-83982410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 66
               

               
Conread position:
               
206-409
               

               
Cow position:
               
chr1:52488210-52488006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
206-409
               

               
Cow position:
               
chr1:72012055-72011845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
206-409
               

               
Cow position:
               
chr1:90864552-90864329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 65
               

               
Conread position:
               
206-411
               

               
Cow position:
               
chr1:81363742-81363937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
206-411
               

               
Cow position:
               
chr1:97806540-97806754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
65, 141
               

               
Conread position:
               
206-416
               

               
Cow position:
               
chr1:95215438-95215210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
76, 68
               

               
Conread position:
               
206-419
               

               
Cow position:
               
chr1:42555018-42555238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
206-424
               

               
Cow position:
               
chr1:52206440-52206658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
206-424
               

               
Cow position:
               
chr1:66430049-66430276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
206-425
               

               
Cow position:
               
chr1:79663918-79663689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-425
               

               
Cow position:
               
chr1:91817026-91816794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-426
               

               
Cow position:
               
chr1:51628754-51628518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-428
               

               
Cow position:
               
chr1:99095111-99095344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
80, 65
               

               
Conread position:
               
206-429
               

               
Cow position:
               
chr1:97620092-97619852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
206-430
               

               
Cow position:
               
chr1:29935633-29935399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
206-430
               

               
Cow position:
               
chr1:62964027-62964261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
76, 68
               

               
Conread position:
               
206-431
               

               
Cow position:
               
chr1:1801892-1802123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
206-431
               

               
Cow position:
               
chr1:32341459-32341224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
206-431
               

               
Cow position:
               
chr1:86113665-86113418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-433
               

               
Cow position:
               
chr1:8349563-8349330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
206-433
               

               
Cow position:
               
chr1:54199632-54199391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
206-433
               

               
Cow position:
               
chr1:69941220-69940979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
206-433
               

               
Cow position:
               
chr1:102519416-102519653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
206-436
               

               
Cow position:
               
chr1:102756673-102756438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
206-446
               

               
Cow position:
               
chr1:45007214-45007466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
206-450
               

               
Cow position:
               
chr1:56657789-56658038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
206-450
               

               
Cow position:
               
chr1:81613133-81613394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
76, 68
               

               
Conread position:
               
206-450
               

               
Cow position:
               
chr1:82504715-82504981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
206-457
               

               
Cow position:
               
chr1:41004619-41004355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
206-457
               

               
Cow position:
               
chr1:54207068-54206809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
206-457
               

               
Cow position:
               
chr1:54258315-54258572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
206-459
               

               
Cow position:
               
chr1:14379782-14379525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 99
               

               
Conread position:
               
206-459
               

               
Cow position:
               
chr1:25383407-25383676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chr1:19482326-19482072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chr1:52564044-52563800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 62
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chr1:76222943-76222679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chr1:81355955-81355696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chr1:98551465-98551729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
206-469
               

               
Cow position:
               
chr1:4032382-4032647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
137, 65
               

               
Conread position:
               
206-469
               

               
Cow position:
               
chr1:6103165-6102892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 188
               

               
Conread position:
               
207-366
               

               
Cow position:
               
chr1:99118134-99118301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
75, 64
               

               
Conread position:
               
207-418
               

               
Cow position:
               
chr1:89395340-89395574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
207-420
               

               
Cow position:
               
chr1:3924045-3923822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
69, 64
               

               
Conread position:
               
207-425
               

               
Cow position:
               
chr1:28176749-28176988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
207-431
               

               
Cow position:
               
chr1:37707220-37706988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
75, 64
               

               
Conread position:
               
207-431
               

               
Cow position:
               
chr1:43352900-43352672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
207-432
               

               
Cow position:
               
chr1:72181583-72181815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
207-433
               

               
Cow position:
               
chr1:24534494-24534266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
75, 64
               

               
Conread position:
               
207-437
               

               
Cow position:
               
chr1:21835697-21835937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
72, 64
               

               
Conread position:
               
207-440
               

               
Cow position:
               
chr1:57900992-57900748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
75, 64
               

               
Conread position:
               
207-449
               

               
Cow position:
               
chr1:19998286-19998038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
207-450
               

               
Cow position:
               
chr1:75967185-75967436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
93, 64
               

               
Conread position:
               
207-457
               

               
Cow position:
               
chr1:100400452-100400188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
207-461
               

               
Cow position:
               
chr1:43505272-43505538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
207-461
               

               
Cow position:
               
chr1:47233726-47233469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
208-344
               

               
Cow position:
               
chr1:71938761-71938621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
208-364
               

               
Cow position:
               
chr1:9437799-9437639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
74, 64
               

               
Conread position:
               
208-367
               

               
Cow position:
               
chr1:78030733-78030566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 63
               

               
Conread position:
               
208-367
               

               
Cow position:
               
chr1:95071736-95071897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
208-379
               

               
Cow position:
               
chr1:39249045-39248872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
72, 63
               

               
Conread position:
               
208-403
               

               
Cow position:
               
chr1:94378782-94378975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
208-405
               

               
Cow position:
               
chr1:13614969-13614763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 63
               

               
Conread position:
               
208-408
               

               
Cow position:
               
chr1:42968566-42968352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
208-413
               

               
Cow position:
               
chr1:98708192-98708408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
208-420
               

               
Cow position:
               
chr1:7143099-7142873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 63
               

               
Conread position:
               
208-423
               

               
Cow position:
               
chr1:11020785-11021004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
208-428
               

               
Cow position:
               
chr1:46218333-46218555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
208-431
               

               
Cow position:
               
chr1:82338035-82337794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
208-433
               

               
Cow position:
               
chr1:3752193-3751950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
208-434
               

               
Cow position:
               
chr1:88530037-88529811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
208-436
               

               
Cow position:
               
chr1:77657816-77658056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
208-437
               

               
Cow position:
               
chr1:71135903-71136138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 28
               

               
Conread position:
               
208-450
               

               
Cow position:
               
chr1:24655710-24655963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
74, 36
               

               
Conread position:
               
208-452
               

               
Cow position:
               
chr1:50679536-50679279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
208-468
               

               
Cow position:
               
chr1:99609116-99609387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
208-469
               

               
Cow position:
               
chr1:39418368-39418094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
208-469
               

               
Cow position:
               
chr1:79165342-79165067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
209-361
               

               
Cow position:
               
chr1:58439295-58439143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
209-376
               

               
Cow position:
               
chr1:4619118-4618940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
73, 62
               

               
Conread position:
               
209-409
               

               
Cow position:
               
chr1:98612993-98613198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
209-420
               

               
Cow position:
               
chr1:55135587-55135807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
209-425
               

               
Cow position:
               
chr1:68854926-68855144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
209-430
               

               
Cow position:
               
chr1:53520657-53520896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 62
               

               
Conread position:
               
209-431
               

               
Cow position:
               
chr1:49839257-49839489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
27, 224
               

               
Conread position:
               
209-433
               

               
Cow position:
               
chr1:3340688-3340922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
73, 62
               

               
Conread position:
               
209-433
               

               
Cow position:
               
chr1:68619186-68618946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
209-433
               

               
Cow position:
               
chr1:95100714-95100944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
209-458
               

               
Cow position:
               
chr1:22467681-22467943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
73, 62
               

               
Conread position:
               
209-469
               

               
Cow position:
               
chr1:11853939-11853668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 62
               

               
Conread position:
               
210-416
               

               
Cow position:
               
chr1:15311620-15311840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
72, 61
               

               
Conread position:
               
210-431
               

               
Cow position:
               
chr1:95176687-95176921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 62
               

               
Conread position:
               
210-433
               

               
Cow position:
               
chr1:93528442-93528687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 61
               

               
Conread position:
               
210-450
               

               
Cow position:
               
chr1:34159584-34159840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
210-450
               

               
Cow position:
               
chr1:53424939-53425181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
153, 61
               

               
Conread position:
               
210-451
               

               
Cow position:
               
chr1:29671772-29671516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
72, 61
               

               
Conread position:
               
210-461
               

               
Cow position:
               
chr1:78857570-78857320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
210-466
               

               
Cow position:
               
chr1:52994776-52995038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
211-431
               

               
Cow position:
               
chr1:3244603-3244832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
71, 60
               

               
Conread position:
               
212-367
               

               
Cow position:
               
chr1:26159678-26159515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 59
               

               
Conread position:
               
212-377
               

               
Cow position:
               
chr1:51531527-51531691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
213-431
               

               
Cow position:
               
chr1:71119266-71119502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
214-358
               

               
Cow position:
               
chr1:99105126-99104980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
214-390
               

               
Cow position:
               
chr1:98577231-98577411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
214-420
               

               
Cow position:
               
chr1:51836327-51836545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 57
               

               
Conread position:
               
214-427
               

               
Cow position:
               
chr1:55357529-55357303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
68, 9
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr1:56643833-56643603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
214-439
               

               
Cow position:
               
chr1:3035237-3035001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
68, 57
               

               
Conread position:
               
214-465
               

               
Cow position:
               
chr1:51445635-51445901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
215-420
               

               
Cow position:
               
chr1:3962927-3962721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
142, 56
               

               
Conread position:
               
215-431
               

               
Cow position:
               
chr1:87072461-87072681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
67, 56
               

               
Conread position:
               
215-434
               

               
Cow position:
               
chr1:20002479-20002244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
87, 56
               

               
Conread position:
               
216-367
               

               
Cow position:
               
chr1:25281918-25281763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 55
               

               
Conread position:
               
216-408
               

               
Cow position:
               
chr1:55229742-55229947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 55
               

               
Conread position:
               
217-416
               

               
Cow position:
               
chr1:36874774-36874984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
65, 50
               

               
Conread position:
               
217-432
               

               
Cow position:
               
chr1:64962896-64962682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 54
               

               
Conread position:
               
217-433
               

               
Cow position:
               
chr1:31235175-31234943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 191
               

               
Conread position:
               
217-435
               

               
Cow position:
               
chr1:20287876-20288108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
65, 18
               

               
Conread position:
               
217-446
               

               
Cow position:
               
chr1:51818700-51818944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 54
               

               
Conread position:
               
218-366
               

               
Cow position:
               
chr1:13637910-13637761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 5
               

               
Conread position:
               
218-450
               

               
Cow position:
               
chr1:95056815-95057059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 53
               

               
Conread position:
               
218-452
               

               
Cow position:
               
chr1:94403976-94404214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
218-461
               

               
Cow position:
               
chr1:41696817-41697067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
218-469
               

               
Cow position:
               
chr1:44506728-44506990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
64, 37
               

               
Conread position:
               
220-469
               

               
Cow position:
               
chr1:100512358-100512626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
221-361
               

               
Cow position:
               
chr1:62996258-62996401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
221-367
               

               
Cow position:
               
chr1:65637967-65638122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
221-425
               

               
Cow position:
               
chr1:32631229-32631441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
221-432
               

               
Cow position:
               
chr1:85411342-85411564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 50
               

               
Conread position:
               
221-433
               

               
Cow position:
               
chr1:24597415-24597645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
221-447
               

               
Cow position:
               
chr1:64189265-64189497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
221-450
               

               
Cow position:
               
chr1:51769848-51770092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 51
               

               
Conread position:
               
225-443
               

               
Cow position:
               
chr1:53411143-53410917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
225-450
               

               
Cow position:
               
chr1:97611886-97611655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
57, 46
               

               
Conread position:
               
227-425
               

               
Cow position:
               
chr1:43448055-43447851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 45
               

               
Conread position:
               
227-430
               

               
Cow position:
               
chr1:31348672-31348456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
228-361
               

               
Cow position:
               
chr1:86484727-86484867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
229-419
               

               
Cow position:
               
chr1:98348534-98348342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
231-423
               

               
Cow position:
               
chr1:53540163-53540368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
231-469
               

               
Cow position:
               
chr1:7186560-7186805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
236-433
               

               
Cow position:
               
chr1:34771726-34771515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 38
               

               
Conread position:
               
237-469
               

               
Cow position:
               
chr1:26702429-26702186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
238-429
               

               
Cow position:
               
chr1:98558004-98557801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
240-420
               

               
Cow position:
               
chr1:7971212-7971390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
133, 31
               

               
Conread position:
               
240-429
               

               
Cow position:
               
chr1:45673493-45673694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
240-432
               

               
Cow position:
               
chr1:6305087-6304877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
243-469
               

               
Cow position:
               
chr1:74956239-74956000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
244-413
               

               
Cow position:
               
chr1:19885170-19885349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
249-431
               

               
Cow position:
               
chr1:95654925-95654731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
253-433
               

               
Cow position:
               
chr1:75141801-75141985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
262-423
               

               
Cow position:
               
chr1:6788482-6788308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
279-412
               

               
Cow position:
               
chr1:68763856-68763717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 127
               

               
Conread position:
               
279-424
               

               
Cow position:
               
chr1:28563743-28563594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
279-432
               

               
Cow position:
               
chr1:51654236-51654398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
279-469
               

               
Cow position:
               
chr1:82443631-82443437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 145
               

               
Conread position:
               
281-453
               

               
Cow position:
               
chr1:24876093-24876265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
70, 136
               

               
Conread position:
               
294-469
               

               
Cow position:
               
chr1:51684644-51684824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
302-420
               

               
Cow position:
               
chr1:65909375-65909502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               
Show alignments to all cow chromosomes.