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Cow genome map

           
Conread name:
           
Emb1-C0005188_E08
        

               
Conread position:
               
2-182
               

               
Cow position:
               
chrX:23019379-23019561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
26, 114
               

               
Conread position:
               
4-171
               

               
Cow position:
               
chrX:16016617-16016453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 131
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chrX:6282686-6282514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chrX:23041066-23040888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chrX:23277077-23277258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chrX:26528033-26528213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chrX:30183837-30183655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chrX:30232051-30231863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chrX:44387177-44387366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
8-174
               

               
Cow position:
               
chrX:17667834-17667670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
12-191
               

               
Cow position:
               
chrX:13053091-13053266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
50, 77
               

               
Conread position:
               
13-175
               

               
Cow position:
               
chrX:30056712-30056883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
13-182
               

               
Cow position:
               
chrX:5299156-5298986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 30
               

               
Conread position:
               
20-185
               

               
Cow position:
               
chrX:26767125-26766959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
8, 113
               

               
Conread position:
               
31-174
               

               
Cow position:
               
chrX:26427562-26427417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
31-182
               

               
Cow position:
               
chrX:2536369-2536216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
51-180
               

               
Cow position:
               
chrX:18534578-18534707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
131-450
               

               
Cow position:
               
chrX:20751960-20752280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
139-467
               

               
Cow position:
               
chrX:33493469-33493815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 104
               

               
Conread position:
               
142-357
               

               
Cow position:
               
chrX:25283433-25283226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
138, 29
               

               
Conread position:
               
142-388
               

               
Cow position:
               
chrX:32978550-32978303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
142-411
               

               
Cow position:
               
chrX:12249508-12249786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
142-425
               

               
Cow position:
               
chrX:15147477-15147188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
32, 58
               

               
Conread position:
               
142-427
               

               
Cow position:
               
chrX:38936406-38936699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
142-432
               

               
Cow position:
               
chrX:14974021-14973735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
130, 13
               

               
Conread position:
               
142-459
               

               
Cow position:
               
chrX:14884257-14883928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
142-465
               

               
Cow position:
               
chrX:40269183-40269525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
143-366
               

               
Cow position:
               
chrX:6543964-6544188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
143-434
               

               
Cow position:
               
chrX:11674766-11675074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
151-410
               

               
Cow position:
               
chrX:17794697-17794960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
160-409
               

               
Cow position:
               
chrX:4633126-4632867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
163-367
               

               
Cow position:
               
chrX:39071423-39071628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
163-377
               

               
Cow position:
               
chrX:32419933-32420164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 118
               

               
Conread position:
               
163-377
               

               
Cow position:
               
chrX:42011006-42011223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
165-429
               

               
Cow position:
               
chrX:20340159-20339886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
165-432
               

               
Cow position:
               
chrX:10412254-10411980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
165-446
               

               
Cow position:
               
chrX:20582762-20583037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
167-433
               

               
Cow position:
               
chrX:1514673-1514402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
172-344
               

               
Cow position:
               
chrX:6607149-6607334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 68
               

               
Conread position:
               
173-340
               

               
Cow position:
               
chrX:32871045-32870876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
173-343
               

               
Cow position:
               
chrX:4123576-4123741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
112, 26
               

               
Conread position:
               
173-348
               

               
Cow position:
               
chrX:33827291-33827104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 183
               

               
Conread position:
               
173-349
               

               
Cow position:
               
chrX:46771231-46771052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
173-361
               

               
Cow position:
               
chrX:35409409-35409588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
176, 26
               

               
Conread position:
               
173-363
               

               
Cow position:
               
chrX:48227874-48227684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
173-366
               

               
Cow position:
               
chrX:38007027-38006832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-376
               

               
Cow position:
               
chrX:16531740-16531939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-376
               

               
Cow position:
               
chrX:44908055-44908261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
173-377
               

               
Cow position:
               
chrX:40183609-40183399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
173-386
               

               
Cow position:
               
chrX:17271548-17271331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 31
               

               
Conread position:
               
173-407
               

               
Cow position:
               
chrX:25337918-25338167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
107, 26
               

               
Conread position:
               
173-407
               

               
Cow position:
               
chrX:37843461-37843703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
173-409
               

               
Cow position:
               
chrX:15545638-15545876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
107, 26
               

               
Conread position:
               
173-409
               

               
Cow position:
               
chrX:23564056-23563806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
173-409
               

               
Cow position:
               
chrX:30162738-30162981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
106, 26
               

               
Conread position:
               
173-409
               

               
Cow position:
               
chrX:34454410-34454649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
173-414
               

               
Cow position:
               
chrX:24105367-24105613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-414
               

               
Cow position:
               
chrX:40452472-40452220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
173-416
               

               
Cow position:
               
chrX:19188677-19188929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
173-416
               

               
Cow position:
               
chrX:35388166-35387911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
173-419
               

               
Cow position:
               
chrX:35681076-35681335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
173-420
               

               
Cow position:
               
chrX:36840608-36840865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
108, 62
               

               
Conread position:
               
173-424
               

               
Cow position:
               
chrX:21665852-21665596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
109, 23
               

               
Conread position:
               
173-424
               

               
Cow position:
               
chrX:26441039-26440779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
107, 26
               

               
Conread position:
               
173-424
               

               
Cow position:
               
chrX:38094784-38094521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
107, 26
               

               
Conread position:
               
173-425
               

               
Cow position:
               
chrX:15007410-15007149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
173-425
               

               
Cow position:
               
chrX:19689959-19690218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
173-425
               

               
Cow position:
               
chrX:41403702-41403979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
31, 103
               

               
Conread position:
               
173-425
               

               
Cow position:
               
chrX:41410250-41410527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
31, 103
               

               
Conread position:
               
173-425
               

               
Cow position:
               
chrX:41879190-41878932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
173-428
               

               
Cow position:
               
chrX:26625944-26625671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
173-429
               

               
Cow position:
               
chrX:34401738-34402002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
173-431
               

               
Cow position:
               
chrX:31443080-31442826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-432
               

               
Cow position:
               
chrX:488231-488499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 24
               

               
Conread position:
               
173-432
               

               
Cow position:
               
chrX:11581675-11581939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-433
               

               
Cow position:
               
chrX:28845585-28845842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-433
               

               
Cow position:
               
chrX:40647719-40647995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-433
               

               
Cow position:
               
chrX:42874719-42874992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
173-433
               

               
Cow position:
               
chrX:42994355-42994622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
173-435
               

               
Cow position:
               
chrX:11718039-11717778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-435
               

               
Cow position:
               
chrX:35609727-35609997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
173-435
               

               
Cow position:
               
chrX:37416334-37416071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
173-440
               

               
Cow position:
               
chrX:14924741-14925015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
173-441
               

               
Cow position:
               
chrX:25237919-25238185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-443
               

               
Cow position:
               
chrX:34990782-34991048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
117, 26
               

               
Conread position:
               
173-446
               

               
Cow position:
               
chrX:7508867-7509158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 185
               

               
Conread position:
               
173-446
               

               
Cow position:
               
chrX:29289317-29289601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
173-446
               

               
Cow position:
               
chrX:35273085-35273378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
54, 184
               

               
Conread position:
               
173-450
               

               
Cow position:
               
chrX:23583299-23583587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
173-451
               

               
Cow position:
               
chrX:34754451-34754165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
173-457
               

               
Cow position:
               
chrX:32309842-32310131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chrX:1055647-1055351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
112, 31
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chrX:20151591-20151890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
117, 31
               

               
Conread position:
               
173-469
               

               
Cow position:
               
chrX:27509279-27508984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
173-469
               

               
Cow position:
               
chrX:27516274-27516568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
112, 18
               

               
Conread position:
               
176-344
               

               
Cow position:
               
chrX:25618174-25617997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
176-408
               

               
Cow position:
               
chrX:21064030-21064265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
104, 16
               

               
Conread position:
               
176-419
               

               
Cow position:
               
chrX:7496989-7497234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
109, 28
               

               
Conread position:
               
176-435
               

               
Cow position:
               
chrX:33639709-33639983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
105, 95
               

               
Conread position:
               
176-440
               

               
Cow position:
               
chrX:7571650-7571919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
176-446
               

               
Cow position:
               
chrX:754702-754986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
104, 16
               

               
Conread position:
               
176-461
               

               
Cow position:
               
chrX:38439217-38439511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
176-469
               

               
Cow position:
               
chrX:38072027-38071728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
177-363
               

               
Cow position:
               
chrX:7382068-7382253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
105, 20
               

               
Conread position:
               
177-402
               

               
Cow position:
               
chrX:7806122-7806350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
177-409
               

               
Cow position:
               
chrX:32171137-32170903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
169, 27
               

               
Conread position:
               
177-422
               

               
Cow position:
               
chrX:17497841-17498080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
193, 22
               

               
Conread position:
               
177-427
               

               
Cow position:
               
chrX:10866122-10865866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
104, 21
               

               
Conread position:
               
177-431
               

               
Cow position:
               
chrX:1616305-1616038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
104, 7
               

               
Conread position:
               
177-441
               

               
Cow position:
               
chrX:3161271-3161007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
177-465
               

               
Cow position:
               
chrX:41198842-41199146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
177-469
               

               
Cow position:
               
chrX:126537-126808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
178-367
               

               
Cow position:
               
chrX:48536920-48536729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
182-357
               

               
Cow position:
               
chrX:46990040-46989867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
190-446
               

               
Cow position:
               
chrX:15305536-15305276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
91, 76
               

               
Conread position:
               
191-405
               

               
Cow position:
               
chrX:25411593-25411821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
191-416
               

               
Cow position:
               
chrX:8517629-8517860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 105
               

               
Conread position:
               
191-432
               

               
Cow position:
               
chrX:43075751-43075992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
89, 81
               

               
Conread position:
               
191-461
               

               
Cow position:
               
chrX:26876128-26875851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
91, 45
               

               
Conread position:
               
191-469
               

               
Cow position:
               
chrX:27680156-27680436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
89, 44
               

               
Conread position:
               
192-337
               

               
Cow position:
               
chrX:37205482-37205627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 77
               

               
Conread position:
               
192-361
               

               
Cow position:
               
chrX:42499275-42499099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
192-395
               

               
Cow position:
               
chrX:38935035-38935247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 182
               

               
Conread position:
               
192-412
               

               
Cow position:
               
chrX:27394260-27394035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
126, 79
               

               
Conread position:
               
192-416
               

               
Cow position:
               
chrX:9855054-9855288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
90, 79
               

               
Conread position:
               
192-416
               

               
Cow position:
               
chrX:9953895-9954129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
90, 79
               

               
Conread position:
               
192-416
               

               
Cow position:
               
chrX:22624235-22624464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
85, 74
               

               
Conread position:
               
192-420
               

               
Cow position:
               
chrX:7513270-7513505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 47
               

               
Conread position:
               
192-420
               

               
Cow position:
               
chrX:8682176-8681932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
192-420
               

               
Cow position:
               
chrX:42492756-42492523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 29
               

               
Conread position:
               
192-424
               

               
Cow position:
               
chrX:38549204-38549446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
192-427
               

               
Cow position:
               
chrX:44961501-44961751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
192-429
               

               
Cow position:
               
chrX:21004438-21004685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
88, 44
               

               
Conread position:
               
192-431
               

               
Cow position:
               
chrX:40692984-40692747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
192-435
               

               
Cow position:
               
chrX:35284369-35284630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
16, 87
               

               
Conread position:
               
192-436
               

               
Cow position:
               
chrX:27287965-27287726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
168, 44
               

               
Conread position:
               
192-446
               

               
Cow position:
               
chrX:21672305-21672577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chrX:2029144-2029414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 44
               

               
Conread position:
               
192-461
               

               
Cow position:
               
chrX:619254-618972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
90, 79
               

               
Conread position:
               
192-461
               

               
Cow position:
               
chrX:34543541-34543814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 230
               

               
Conread position:
               
192-467
               

               
Cow position:
               
chrX:41884664-41884376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
192-469
               

               
Cow position:
               
chrX:23970143-23970417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
98, 44
               

               
Conread position:
               
192-469
               

               
Cow position:
               
chrX:36975702-36975989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
194-358
               

               
Cow position:
               
chrX:13852236-13852400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 78
               

               
Conread position:
               
194-419
               

               
Cow position:
               
chrX:25419405-25419163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 42
               

               
Conread position:
               
195-452
               

               
Cow position:
               
chrX:12980071-12979813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
199-385
               

               
Cow position:
               
chrX:20709831-20710025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
199-386
               

               
Cow position:
               
chrX:4942988-4942801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
199-386
               

               
Cow position:
               
chrX:36250101-36249908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
82, 73
               

               
Conread position:
               
199-386
               

               
Cow position:
               
chrX:48675838-48676026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 72
               

               
Conread position:
               
199-409
               

               
Cow position:
               
chrX:15485867-15485640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
199-419
               

               
Cow position:
               
chrX:44053019-44053252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
82, 72
               

               
Conread position:
               
199-424
               

               
Cow position:
               
chrX:25816135-25815910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
88, 72
               

               
Conread position:
               
199-424
               

               
Cow position:
               
chrX:43049103-43049348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
199-433
               

               
Cow position:
               
chrX:5872074-5872326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
83, 73
               

               
Conread position:
               
199-446
               

               
Cow position:
               
chrX:43527264-43527531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 75
               

               
Conread position:
               
199-450
               

               
Cow position:
               
chrX:39938756-39938497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
199-459
               

               
Cow position:
               
chrX:13912840-13913098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
37, 115
               

               
Conread position:
               
200-347
               

               
Cow position:
               
chrX:38794491-38794643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
203-387
               

               
Cow position:
               
chrX:9201312-9201502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
204-353
               

               
Cow position:
               
chrX:29049736-29049883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
204-433
               

               
Cow position:
               
chrX:14900955-14900721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
205-344
               

               
Cow position:
               
chrX:9252411-9252264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 66
               

               
Conread position:
               
205-352
               

               
Cow position:
               
chrX:43647977-43647824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
205-357
               

               
Cow position:
               
chrX:39347019-39346858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
205-358
               

               
Cow position:
               
chrX:38642027-38642185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
205-387
               

               
Cow position:
               
chrX:28111273-28111459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 66
               

               
Conread position:
               
205-420
               

               
Cow position:
               
chrX:42507880-42507648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
77, 66
               

               
Conread position:
               
205-423
               

               
Cow position:
               
chrX:28134113-28134343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
205-432
               

               
Cow position:
               
chrX:47757162-47756922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
69, 227
               

               
Conread position:
               
205-461
               

               
Cow position:
               
chrX:11073424-11073161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
206-344
               

               
Cow position:
               
chrX:29925810-29925669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
206-349
               

               
Cow position:
               
chrX:4269300-4269151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
206-349
               

               
Cow position:
               
chrX:45787422-45787567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-358
               

               
Cow position:
               
chrX:21795264-21795420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
206-367
               

               
Cow position:
               
chrX:36778174-36778345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
206-377
               

               
Cow position:
               
chrX:9997565-9997391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
206-377
               

               
Cow position:
               
chrX:25035619-25035435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
206-377
               

               
Cow position:
               
chrX:28847111-28846937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
206-377
               

               
Cow position:
               
chrX:31260862-31260683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
75, 66
               

               
Conread position:
               
206-388
               

               
Cow position:
               
chrX:3654372-3654561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-399
               

               
Cow position:
               
chrX:7695529-7695717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
162, 29
               

               
Conread position:
               
206-409
               

               
Cow position:
               
chrX:33466385-33466594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 20
               

               
Conread position:
               
206-412
               

               
Cow position:
               
chrX:7646026-7646240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
206-413
               

               
Cow position:
               
chrX:47191631-47191423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
206-415
               

               
Cow position:
               
chrX:27432151-27431924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
76, 68
               

               
Conread position:
               
206-416
               

               
Cow position:
               
chrX:32020354-32020129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
75, 65
               

               
Conread position:
               
206-416
               

               
Cow position:
               
chrX:44054569-44054797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-420
               

               
Cow position:
               
chrX:13382092-13382325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
206-420
               

               
Cow position:
               
chrX:19930424-19930646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
75, 40
               

               
Conread position:
               
206-420
               

               
Cow position:
               
chrX:27446456-27446691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-420
               

               
Cow position:
               
chrX:37836354-37836585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
206-420
               

               
Cow position:
               
chrX:41743681-41743907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
206-422
               

               
Cow position:
               
chrX:6278738-6278503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
76, 68
               

               
Conread position:
               
206-424
               

               
Cow position:
               
chrX:7351067-7351300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
206-425
               

               
Cow position:
               
chrX:7718621-7718854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
206-425
               

               
Cow position:
               
chrX:11082845-11082623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
206-425
               

               
Cow position:
               
chrX:13868462-13868703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
206-431
               

               
Cow position:
               
chrX:8797016-8797259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
206-431
               

               
Cow position:
               
chrX:11655854-11656098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
206-431
               

               
Cow position:
               
chrX:17541732-17541963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
206-431
               

               
Cow position:
               
chrX:34441682-34441445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
206-432
               

               
Cow position:
               
chrX:9635413-9635185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-432
               

               
Cow position:
               
chrX:16762539-16762775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
206-435
               

               
Cow position:
               
chrX:46532741-46532490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
206-436
               

               
Cow position:
               
chrX:30963104-30962862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
75, 65
               

               
Conread position:
               
206-441
               

               
Cow position:
               
chrX:11561922-11562173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
206-441
               

               
Cow position:
               
chrX:45501916-45502160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
77, 65
               

               
Conread position:
               
206-450
               

               
Cow position:
               
chrX:21593051-21593313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chrX:878603-878350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chrX:11844473-11844211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chrX:11939156-11938905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chrX:48010362-48010634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 241
               

               
Conread position:
               
207-377
               

               
Cow position:
               
chrX:42855177-42855359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
75, 64
               

               
Conread position:
               
207-387
               

               
Cow position:
               
chrX:46722972-46722782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
71, 64
               

               
Conread position:
               
207-430
               

               
Cow position:
               
chrX:2648581-2648348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
207-435
               

               
Cow position:
               
chrX:42470168-42469938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
75, 64
               

               
Conread position:
               
207-437
               

               
Cow position:
               
chrX:18456161-18456412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
73, 233
               

               
Conread position:
               
207-445
               

               
Cow position:
               
chrX:13648015-13647762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 87
               

               
Conread position:
               
207-461
               

               
Cow position:
               
chrX:42171530-42171264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
207-466
               

               
Cow position:
               
chrX:34238490-34238754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
208-349
               

               
Cow position:
               
chrX:25301983-25301835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
68, 63
               

               
Conread position:
               
208-405
               

               
Cow position:
               
chrX:21663079-21663285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chrX:9416923-9416702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
208-419
               

               
Cow position:
               
chrX:37048811-37048583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
208-420
               

               
Cow position:
               
chrX:31294772-31294568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
208-420
               

               
Cow position:
               
chrX:34565067-34565276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
141, 37
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chrX:16790067-16789853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 28
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chrX:37489500-37489722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
208-425
               

               
Cow position:
               
chrX:17662827-17662593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
208-425
               

               
Cow position:
               
chrX:17888636-17888419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
75, 63
               

               
Conread position:
               
208-431
               

               
Cow position:
               
chrX:40116195-40116421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
208-431
               

               
Cow position:
               
chrX:41167194-41166959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
74, 28
               

               
Conread position:
               
208-431
               

               
Cow position:
               
chrX:42086632-42086863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
208-447
               

               
Cow position:
               
chrX:27772186-27771941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
208-450
               

               
Cow position:
               
chrX:34502690-34502946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
208-453
               

               
Cow position:
               
chrX:35542661-35542924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
208-457
               

               
Cow position:
               
chrX:20887874-20887613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
208-463
               

               
Cow position:
               
chrX:34192447-34192702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
85, 53
               

               
Conread position:
               
208-469
               

               
Cow position:
               
chrX:42247414-42247144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
209-348
               

               
Cow position:
               
chrX:18812029-18812170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
209-429
               

               
Cow position:
               
chrX:11589821-11589583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
209-435
               

               
Cow position:
               
chrX:1728646-1728417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
209-442
               

               
Cow position:
               
chrX:30921956-30922200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
59, 69
               

               
Conread position:
               
209-457
               

               
Cow position:
               
chrX:17725749-17726001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
210-347
               

               
Cow position:
               
chrX:9360655-9360800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
210-428
               

               
Cow position:
               
chrX:37232181-37232417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 64
               

               
Conread position:
               
210-434
               

               
Cow position:
               
chrX:25232362-25232599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
211-377
               

               
Cow position:
               
chrX:8827739-8827567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 60
               

               
Conread position:
               
211-425
               

               
Cow position:
               
chrX:11856202-11856428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
212-433
               

               
Cow position:
               
chrX:32128206-32127983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
212-460
               

               
Cow position:
               
chrX:22074574-22074825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
70, 59
               

               
Conread position:
               
213-405
               

               
Cow position:
               
chrX:21642703-21642498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
65, 23
               

               
Conread position:
               
213-428
               

               
Cow position:
               
chrX:46315604-46315374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
213-446
               

               
Cow position:
               
chrX:15139770-15139524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
213-461
               

               
Cow position:
               
chrX:29509669-29509408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
69, 58
               

               
Conread position:
               
214-344
               

               
Cow position:
               
chrX:20787407-20787269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
5, 96
               

               
Conread position:
               
214-425
               

               
Cow position:
               
chrX:10437889-10437668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
71, 57
               

               
Conread position:
               
214-437
               

               
Cow position:
               
chrX:17042466-17042706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
215-377
               

               
Cow position:
               
chrX:16541899-16541727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 20
               

               
Conread position:
               
215-431
               

               
Cow position:
               
chrX:13177688-13177461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 56
               

               
Conread position:
               
215-433
               

               
Cow position:
               
chrX:6488363-6488588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
152, 56
               

               
Conread position:
               
215-433
               

               
Cow position:
               
chrX:7336613-7336836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
153, 53
               

               
Conread position:
               
216-433
               

               
Cow position:
               
chrX:1503117-1503348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
65, 20
               

               
Conread position:
               
217-461
               

               
Cow position:
               
chrX:23091660-23091900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
218-420
               

               
Cow position:
               
chrX:6234670-6234457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
221-420
               

               
Cow position:
               
chrX:11633461-11633675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 50
               

               
Conread position:
               
221-429
               

               
Cow position:
               
chrX:29120841-29121049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
147, 14
               

               
Conread position:
               
222-398
               

               
Cow position:
               
chrX:46430075-46429887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
8, 50
               

               
Conread position:
               
222-434
               

               
Cow position:
               
chrX:41560455-41560245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
59, 50
               

               
Conread position:
               
222-450
               

               
Cow position:
               
chrX:40567383-40567624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
56, 209
               

               
Conread position:
               
222-450
               

               
Cow position:
               
chrX:45015369-45015602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
227-446
               

               
Cow position:
               
chrX:3579735-3579967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 10
               

               
Conread position:
               
227-457
               

               
Cow position:
               
chrX:29542430-29542183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
49, 124
               

               
Conread position:
               
228-405
               

               
Cow position:
               
chrX:27174785-27174977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 43
               

               
Conread position:
               
229-348
               

               
Cow position:
               
chrX:45976673-45976791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
61, 43
               

               
Conread position:
               
229-377
               

               
Cow position:
               
chrX:9425951-9425796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
231-425
               

               
Cow position:
               
chrX:26285772-26285979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
231-469
               

               
Cow position:
               
chrX:10831704-10831452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
232-388
               

               
Cow position:
               
chrX:16996300-16996463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
232-423
               

               
Cow position:
               
chrX:46587611-46587818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
234-446
               

               
Cow position:
               
chrX:29545084-29544854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
236-432
               

               
Cow position:
               
chrX:34270203-34270408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
6, 33
               

               
Conread position:
               
237-425
               

               
Cow position:
               
chrX:1499468-1499665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
239-433
               

               
Cow position:
               
chrX:12405576-12405372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 32
               

               
Conread position:
               
241-420
               

               
Cow position:
               
chrX:36355925-36356109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
241-433
               

               
Cow position:
               
chrX:36961438-36961650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
40, 30
               

               
Conread position:
               
259-457
               

               
Cow position:
               
chrX:13785537-13785334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
279-425
               

               
Cow position:
               
chrX:4398971-4399126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
279-433
               

               
Cow position:
               
chrX:32820874-32821038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
279-436
               

               
Cow position:
               
chrX:27227969-27228141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
284-450
               

               
Cow position:
               
chrX:29680409-29680235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 62
               
Show alignments to all cow chromosomes.