Cow genome map
| Conread name: | Emb1-C0005188_H20 | 
| Conread position: | 1-216 | 
| Cow position: | chr6:7176368-7176153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 32, 16 | 
| Conread position: | 1-226 | 
| Cow position: | chr6:44097904-44098130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 32, 112 | 
| Conread position: | 1-228 | 
| Cow position: | chr6:15924398-15924168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 34, 86 | 
| Conread position: | 1-283 | 
| Cow position: | chr6:54887394-54887108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 11 | 
| Conread position: | 1-285 | 
| Cow position: | chr6:4903799-4903514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 32, 80 | 
| Conread position: | 1-341 | 
| Cow position: | chr6:5096608-5096272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 82 | 
| Conread position: | 1-342 | 
| Cow position: | chr6:25790504-25790173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 1-356 | 
| Cow position: | chr6:65819385-65819024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 1-365 | 
| Cow position: | chr6:39999262-39998893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 279 | 
| Conread position: | 1-404 | 
| Cow position: | chr6:12352040-12352446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 31 | 
| Conread position: | 1-404 | 
| Cow position: | chr6:17344395-17344806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 1-410 | 
| Cow position: | chr6:40251602-40251190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 149 | 
| Conread position: | 1-414 | 
| Cow position: | chr6:59596438-59596872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 1-417 | 
| Cow position: | chr6:24242484-24242906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 232 | 
| Conread position: | 1-417 | 
| Cow position: | chr6:58030974-58031391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 323 | 
| Conread position: | 1-418 | 
| Cow position: | chr6:21832464-21832041 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 306 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:706195-706617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 381 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:7215992-7216407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 232 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:11869737-11869313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 156 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:16410253-16410676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 54 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:32420147-32420562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 75 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:35873532-35873113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 149 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:39110158-39109749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 22, 49 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:39331336-39330910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 232 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:51733278-51733703 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 232 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:55903286-55903711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 232 | 
| Conread position: | 1-422 | 
| Cow position: | chr6:43797704-43797273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 235 | 
| Conread position: | 2-142 | 
| Cow position: | chr6:58016547-58016688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 8e-31 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 2-142 | 
| Cow position: | chr6:65860574-65860713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 31, 16 | 
| Conread position: | 2-167 | 
| Cow position: | chr6:25357663-25357503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 31, 65 | 
| Conread position: | 2-169 | 
| Cow position: | chr6:27151243-27151075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 35, 148 | 
| Conread position: | 2-172 | 
| Cow position: | chr6:43038873-43038702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-172 | 
| Cow position: | chr6:68030377-68030548 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-192 | 
| Cow position: | chr6:30269705-30269511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 2-217 | 
| Cow position: | chr6:59619274-59619493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 2-226 | 
| Cow position: | chr6:43620929-43621156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-227 | 
| Cow position: | chr6:6034599-6034373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 34, 75 | 
| Conread position: | 2-227 | 
| Cow position: | chr6:6557159-6557387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-227 | 
| Cow position: | chr6:36230328-36230100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-227 | 
| Cow position: | chr6:61829427-61829655 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 35, 148 | 
| Conread position: | 2-227 | 
| Cow position: | chr6:67448728-67448500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-228 | 
| Cow position: | chr6:1109205-1109435 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 2-228 | 
| Cow position: | chr6:6944744-6944520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 32, 17 | 
| Conread position: | 2-228 | 
| Cow position: | chr6:13314832-13314603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 31, 55 | 
| Conread position: | 2-228 | 
| Cow position: | chr6:16766642-16766415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 49 | 
| Conread position: | 2-228 | 
| Cow position: | chr6:17556472-17556246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 16 | 
| Conread position: | 2-228 | 
| Cow position: | chr6:27526765-27526539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 176 | 
| Conread position: | 2-228 | 
| Cow position: | chr6:45736665-45736441 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 169, 25 | 
| Conread position: | 2-228 | 
| Cow position: | chr6:52065923-52065694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-229 | 
| Cow position: | chr6:67173753-67173984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 34, 92 | 
| Conread position: | 2-234 | 
| Cow position: | chr6:34843515-34843281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 230 | 
| Conread position: | 2-265 | 
| Cow position: | chr6:47149774-47149504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 34, 49 | 
| Conread position: | 2-270 | 
| Cow position: | chr6:653599-653326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-270 | 
| Cow position: | chr6:32664904-32664629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 34, 146 | 
| Conread position: | 2-302 | 
| Cow position: | chr6:2618368-2618061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 199 | 
| Conread position: | 2-322 | 
| Cow position: | chr6:20268114-20267793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 21 | 
| Conread position: | 2-333 | 
| Cow position: | chr6:43187307-43187644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 2-337 | 
| Cow position: | chr6:55593268-55593609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 2-339 | 
| Cow position: | chr6:16703545-16703218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 152 | 
| Conread position: | 2-341 | 
| Cow position: | chr6:917241-917597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 246 | 
| Conread position: | 2-341 | 
| Cow position: | chr6:27939232-27939573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-342 | 
| Cow position: | chr6:23568395-23568049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-349 | 
| Cow position: | chr6:31941065-31941418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-351 | 
| Cow position: | chr6:35600877-35601230 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 81 | 
| Conread position: | 2-356 | 
| Cow position: | chr6:40863831-40863478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 21 | 
| Conread position: | 2-356 | 
| Cow position: | chr6:56925931-56926291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 255 | 
| Conread position: | 2-356 | 
| Cow position: | chr6:60332541-60332903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 2-356 | 
| Cow position: | chr6:64719516-64719873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 133 | 
| Conread position: | 2-360 | 
| Cow position: | chr6:43778902-43779252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 25 | 
| Conread position: | 2-365 | 
| Cow position: | chr6:41231686-41232049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 128 | 
| Conread position: | 2-370 | 
| Cow position: | chr6:8634107-8633767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 31, 55 | 
| Conread position: | 2-390 | 
| Cow position: | chr6:56451897-56451511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-398 | 
| Cow position: | chr6:2089474-2089870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 15 | 
| Conread position: | 2-408 | 
| Cow position: | chr6:27173027-27173452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 160 | 
| Conread position: | 2-408 | 
| Cow position: | chr6:50526707-50527122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 39 | 
| Conread position: | 2-409 | 
| Cow position: | chr6:12388256-12387863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 10 | 
| Conread position: | 2-409 | 
| Cow position: | chr6:14928657-14929059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 103 | 
| Conread position: | 2-409 | 
| Cow position: | chr6:26667826-26667413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-409 | 
| Cow position: | chr6:46283900-46283493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 197 | 
| Conread position: | 2-409 | 
| Cow position: | chr6:55238888-55239302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-409 | 
| Cow position: | chr6:57856968-57857382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 230 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:126934-126522 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 81 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:452065-451651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:888755-889168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:1796825-1797238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 15 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:3987858-3987443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:4274268-4274658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 75 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:6569033-6568621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:7138143-7137729 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 46 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:7448693-7449108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:9234709-9235125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:10044413-10044819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:11019855-11020271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 149 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:11389416-11389001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:11401518-11401933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:11453670-11453254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 149 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:12997619-12998029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 87 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:16418484-16418078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:17386721-17387136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:18912536-18912122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:19103710-19103295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:20581578-20581166 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:21163501-21163916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:21711904-21712319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:22043810-22043397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 70 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:22737508-22737093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:25374910-25374495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:26771923-26771509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 80 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:28001198-28000783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:28065189-28065602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 74 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:33809236-33808821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:44146749-44146338 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:45479890-45479475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:45901794-45901380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:45975697-45976112 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:46225764-46225352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:46764204-46763793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 33 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:48881945-48882356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:51150140-51150555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 142 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:55361597-55361182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:57521373-57521788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:62664973-62665388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:63177241-63177656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-410 | 
| Cow position: | chr6:67553430-67553845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 2-413 | 
| Cow position: | chr6:27887110-27887538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 156 | 
| Conread position: | 2-414 | 
| Cow position: | chr6:45666730-45666320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 42 | 
| Conread position: | 2-416 | 
| Cow position: | chr6:29689056-29689474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 37 | 
| Conread position: | 2-417 | 
| Cow position: | chr6:9322201-9322612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 68 | 
| Conread position: | 2-417 | 
| Cow position: | chr6:9839938-9839509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 49 | 
| Conread position: | 2-417 | 
| Cow position: | chr6:11193389-11192960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 74 | 
| Conread position: | 2-417 | 
| Cow position: | chr6:14897378-14897802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 76 | 
| Conread position: | 2-417 | 
| Cow position: | chr6:19044413-19044809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 11 | 
| Conread position: | 2-417 | 
| Cow position: | chr6:29085177-29084770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 11 | 
| Conread position: | 2-417 | 
| Cow position: | chr6:65909522-65909945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 25 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:224307-223877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 81 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:478748-479168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 230 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:1263360-1263781 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 103 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:1834193-1834617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:2111201-2110793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 80 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:3272284-3271859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:3485221-3484798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:5946577-5946153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:6182510-6182105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 235, 25 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:7467452-7467029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 110 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:8754258-8753836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 232 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:11289268-11288846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 169, 230 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:11722010-11721594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:12663117-12662707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 146 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:12926771-12927190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 89 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:13308198-13307776 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 36 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:14851549-14851136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 84 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:14950454-14950035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 116 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:15137975-15137551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:15276042-15275618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:16593148-16593570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 132 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:16624974-16625413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 15 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:17049571-17049996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:17111967-17111544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 116 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:17121584-17122011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 121 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:20553043-20552619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 49 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:28135950-28136360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 112 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:28160607-28161031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:33300863-33301291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 234 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:33949963-33949542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 160 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:34493873-34494294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:34504323-34503902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:36531472-36531897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:39912520-39912944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:40550502-40550079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:40813563-40813983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 105 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:42266931-42267338 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 49 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:44017630-44017206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:46633317-46633733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 96 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:47040011-47039589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 152 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:47171265-47171666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 34, 59 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:51717753-51718178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 74 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:53672533-53672964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 33 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:54358320-54357909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 78 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:55539073-55538652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-419 | 
| Cow position: | chr6:60876494-60876917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 231 | 
| Conread position: | 2-420 | 
| Cow position: | chr6:39136702-39137114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 143 | 
| Conread position: | 2-421 | 
| Cow position: | chr6:14290312-14289890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 100 | 
| Conread position: | 2-421 | 
| Cow position: | chr6:31912977-31912553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 2-421 | 
| Cow position: | chr6:33466156-33466581 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 98 | 
| Conread position: | 2-423 | 
| Cow position: | chr6:10598202-10598611 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 81 | 
| Conread position: | 2-423 | 
| Cow position: | chr6:51673970-51674394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 103 | 
| Conread position: | 2-423 | 
| Cow position: | chr6:53543285-53542857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 148 | 
| Conread position: | 3-220 | 
| Cow position: | chr6:14264055-14263838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 32, 20 | 
| Conread position: | 3-228 | 
| Cow position: | chr6:52977959-52977740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 32, 78 | 
| Conread position: | 3-332 | 
| Cow position: | chr6:32018916-32018570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 3-350 | 
| Cow position: | chr6:17149968-17149629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 181 | 
| Conread position: | 3-367 | 
| Cow position: | chr6:727427-727074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 69 | 
| Conread position: | 3-379 | 
| Cow position: | chr6:15480770-15481137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 22 | 
| Conread position: | 3-417 | 
| Cow position: | chr6:3886306-3885888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 230 | 
| Conread position: | 3-419 | 
| Cow position: | chr6:33922205-33921779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 308 | 
| Conread position: | 4-226 | 
| Cow position: | chr6:529689-529468 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 30, 13 | 
| Conread position: | 4-287 | 
| Cow position: | chr6:53935435-53935153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 29, 69 | 
| Conread position: | 4-330 | 
| Cow position: | chr6:38438806-38439142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 289 | 
| Conread position: | 4-337 | 
| Cow position: | chr6:21588184-21588521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 302 | 
| Conread position: | 4-356 | 
| Cow position: | chr6:11639006-11638650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 91 | 
| Conread position: | 4-356 | 
| Cow position: | chr6:28102669-28102314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 142 | 
| Conread position: | 4-410 | 
| Cow position: | chr6:27094386-27093974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 44 | 
| Conread position: | 4-417 | 
| Cow position: | chr6:52249314-52248913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 31, 195 | 
| Conread position: | 4-419 | 
| Cow position: | chr6:2186582-2186160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 229 | 
| Conread position: | 4-419 | 
| Cow position: | chr6:8205388-8205809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 170, 228 | 
| Conread position: | 4-419 | 
| Cow position: | chr6:20451160-20451580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 126 | 
| Conread position: | 4-419 | 
| Cow position: | chr6:35704314-35703909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 13 | 
| Conread position: | 4-419 | 
| Cow position: | chr6:47539565-47539996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 13 | 
| Conread position: | 4-419 | 
| Cow position: | chr6:50571391-50571813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 229 | 
| Conread position: | 5-419 | 
| Cow position: | chr6:9738053-9737642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 142 | 
| Conread position: | 5-419 | 
| Cow position: | chr6:34075065-34075492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 267 | 
| Conread position: | 6-203 | 
| Cow position: | chr6:58605730-58605929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 27, 72 | 
| Conread position: | 6-215 | 
| Cow position: | chr6:50113880-50114091 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 29, 151 | 
| Conread position: | 6-219 | 
| Cow position: | chr6:52557447-52557233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 27, 33 | 
| Conread position: | 6-228 | 
| Cow position: | chr6:33508448-33508673 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 27, 66 | 
| Conread position: | 6-404 | 
| Cow position: | chr6:27475609-27476023 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 42 | 
| Conread position: | 6-414 | 
| Cow position: | chr6:53810788-53811185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 140 | 
| Conread position: | 6-419 | 
| Cow position: | chr6:182343-181920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 99 | 
| Conread position: | 6-419 | 
| Cow position: | chr6:51876963-51877377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 44 | 
| Conread position: | 7-292 | 
| Cow position: | chr6:65941806-65941517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 160, 28 | 
| Conread position: | 8-191 | 
| Cow position: | chr6:51868191-51868377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 28, 150 | 
| Conread position: | 8-378 | 
| Cow position: | chr6:8382145-8382520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 12 | 
| Conread position: | 8-409 | 
| Cow position: | chr6:29484185-29484586 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 76 | 
| Conread position: | 8-410 | 
| Cow position: | chr6:1402355-1401951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 142 | 
| Conread position: | 8-410 | 
| Cow position: | chr6:1406943-1406539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 142 | 
| Conread position: | 8-410 | 
| Cow position: | chr6:43087394-43087002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 97 | 
| Conread position: | 8-419 | 
| Cow position: | chr6:50120723-50120311 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 73 | 
| Conread position: | 9-419 | 
| Cow position: | chr6:62487277-62486875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 48, 41 | 
| Conread position: | 12-227 | 
| Cow position: | chr6:17773194-17773412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 24, 138 | 
| Conread position: | 12-383 | 
| Cow position: | chr6:2367053-2366698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 132 | 
| Conread position: | 12-408 | 
| Cow position: | chr6:10681201-10681594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 166, 23 | 
| Conread position: | 12-410 | 
| Cow position: | chr6:3152426-3152825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 65 | 
| Conread position: | 12-410 | 
| Cow position: | chr6:12971604-12972009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 138 | 
| Conread position: | 12-410 | 
| Cow position: | chr6:26324992-26324587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 138 | 
| Conread position: | 13-172 | 
| Cow position: | chr6:12099721-12099873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 13-338 | 
| Cow position: | chr6:32286763-32287094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 20 | 
| Conread position: | 13-349 | 
| Cow position: | chr6:58595197-58594855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 20, 84 | 
| Conread position: | 13-374 | 
| Cow position: | chr6:18987345-18987680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 20, 59 | 
| Conread position: | 13-398 | 
| Cow position: | chr6:42988595-42988196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 50 | 
| Conread position: | 13-417 | 
| Cow position: | chr6:46293236-46292860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 355, 23 | 
| Conread position: | 13-417 | 
| Cow position: | chr6:53461970-53461551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 219 | 
| Conread position: | 14-410 | 
| Cow position: | chr6:20216182-20215783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 11 | 
| Conread position: | 14-417 | 
| Cow position: | chr6:1274637-1274237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 68 | 
| Conread position: | 14-419 | 
| Cow position: | chr6:1096518-1096112 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 57 | 
| Conread position: | 14-419 | 
| Cow position: | chr6:6471725-6471297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 98 | 
| Conread position: | 14-419 | 
| Cow position: | chr6:24632037-24631632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 133 | 
| Conread position: | 14-419 | 
| Cow position: | chr6:63041119-63040711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 121 | 
| Conread position: | 17-295 | 
| Cow position: | chr6:10612045-10612322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 89 | 
| Conread position: | 17-324 | 
| Cow position: | chr6:7105319-7105002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 133 | 
| Conread position: | 17-417 | 
| Cow position: | chr6:38988608-38988204 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 76 | 
| Conread position: | 18-410 | 
| Cow position: | chr6:57329492-57329891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 132 | 
| Conread position: | 18-417 | 
| Cow position: | chr6:15783779-15783369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 18-417 | 
| Cow position: | chr6:34548248-34548640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 59 | 
| Conread position: | 19-228 | 
| Cow position: | chr6:10252420-10252630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 9e-32 | 
| Alignm gaps (pig, cow): | 14, 20 | 
| Conread position: | 19-410 | 
| Cow position: | chr6:63715061-63714663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 131 | 
| Conread position: | 32-414 | 
| Cow position: | chr6:47574019-47574402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 193 | 
| Conread position: | 32-419 | 
| Cow position: | chr6:35825274-35825664 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 56 | 
| Conread position: | 32-419 | 
| Cow position: | chr6:65848141-65847751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 153 | 
| Conread position: | 33-410 | 
| Cow position: | chr6:10650563-10650196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 5 | 
| Conread position: | 35-228 | 
| Cow position: | chr6:7112714-7112511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 104, 15 | 
| Conread position: | 35-419 | 
| Cow position: | chr6:4467855-4468236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 139 | 
| Conread position: | 37-391 | 
| Cow position: | chr6:25408455-25408110 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 34 | 
| Conread position: | 38-182 | 
| Cow position: | chr6:11353939-11353796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 38, 109 | 
| Conread position: | 38-333 | 
| Cow position: | chr6:25783179-25782880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 133, 163 | 
| Conread position: | 39-394 | 
| Cow position: | chr6:19441446-19441785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 29, 52 | 
| Conread position: | 44-419 | 
| Cow position: | chr6:19059519-19059895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 58 | 
| Conread position: | 46-349 | 
| Cow position: | chr6:21857129-21856824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 131 | 
| Conread position: | 47-227 | 
| Cow position: | chr6:41233168-41233349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 113, 64 | 
| Conread position: | 47-376 | 
| Cow position: | chr6:48873080-48872750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 185 | 
| Conread position: | 47-387 | 
| Cow position: | chr6:52696828-52697181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 190 | 
| Conread position: | 47-409 | 
| Cow position: | chr6:1245677-1245309 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 113 | 
| Conread position: | 47-410 | 
| Cow position: | chr6:28185075-28184708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 102 | 
| Conread position: | 47-410 | 
| Cow position: | chr6:34017478-34017111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 102 | 
| Conread position: | 47-410 | 
| Cow position: | chr6:42897431-42897803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 102 | 
| Conread position: | 47-410 | 
| Cow position: | chr6:45937523-45937892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 102 | 
| Conread position: | 47-419 | 
| Cow position: | chr6:37387810-37388188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 102 | 
| Conread position: | 47-419 | 
| Cow position: | chr6:43790124-43789746 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 185 | 
| Conread position: | 48-410 | 
| Cow position: | chr6:62333504-62333137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 101 | 
| Conread position: | 48-417 | 
| Cow position: | chr6:10266882-10266513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 123, 219 | 
| Conread position: | 49-230 | 
| Cow position: | chr6:65049440-65049256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 121, 0 | 
| Conread position: | 50-195 | 
| Cow position: | chr6:60615380-60615524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 148 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 107, 97 | 
| Conread position: | 50-409 | 
| Cow position: | chr6:58036529-58036895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 14 | 
| Conread position: | 51-410 | 
| Cow position: | chr6:39897815-39897450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 98 | 
| Conread position: | 52-410 | 
| Cow position: | chr6:39080166-39080530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 97 | 
| Conread position: | 52-419 | 
| Cow position: | chr6:40975417-40975787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 61 | 
| Conread position: | 59-172 | 
| Cow position: | chr6:61632389-61632502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 114 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 59-390 | 
| Cow position: | chr6:3016368-3016701 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 118, 173 | 
| Conread position: | 60-254 | 
| Cow position: | chr6:3574042-3574240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 60-410 | 
| Cow position: | chr6:19712988-19712632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 89 | 
| Conread position: | 61-172 | 
| Cow position: | chr6:14064439-14064328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 61-172 | 
| Cow position: | chr6:48825971-48825860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 99, 88 | 
| Conread position: | 61-417 | 
| Cow position: | chr6:56842279-56842642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 304 | 
| Conread position: | 61-419 | 
| Cow position: | chr6:2581861-2582236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 265 | 
| Conread position: | 64-407 | 
| Cow position: | chr6:34030521-34030867 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 92 | 
| Conread position: | 65-418 | 
| Cow position: | chr6:27858728-27859077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 78 | 
| Conread position: | 65-419 | 
| Cow position: | chr6:28112578-28112216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 66-256 | 
| Cow position: | chr6:59603562-59603367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 39, 169 | 
| Conread position: | 66-357 | 
| Cow position: | chr6:12629217-12629509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 7e-40 | 
| Alignm gaps (pig, cow): | 17, 48 | 
| Conread position: | 66-410 | 
| Cow position: | chr6:45723864-45723512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 66-410 | 
| Cow position: | chr6:54900355-54900702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 10 | 
| Conread position: | 66-423 | 
| Cow position: | chr6:57681268-57680913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 6, 263 | 
| Conread position: | 67-410 | 
| Cow position: | chr6:26829791-26830140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 82 | 
| Conread position: | 71-246 | 
| Cow position: | chr6:50624699-50624878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 71-384 | 
| Cow position: | chr6:40031305-40031617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 25 | 
| Conread position: | 71-419 | 
| Cow position: | chr6:55169752-55170092 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 72 | 
| Conread position: | 71-419 | 
| Cow position: | chr6:66751041-66751382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 108, 5 | 
| Conread position: | 72-313 | 
| Cow position: | chr6:27942098-27942340 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 9e-22 | 
| Alignm gaps (pig, cow): | 115, 111 | 
| Conread position: | 72-340 | 
| Cow position: | chr6:28549767-28549496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 8, 39 | 
| Conread position: | 73-390 | 
| Cow position: | chr6:62961172-62961490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 9e-32 | 
| Alignm gaps (pig, cow): | 95, 75 | 
| Conread position: | 73-419 | 
| Cow position: | chr6:38873258-38872906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 0 | 
| Conread position: | 73-428 | 
| Cow position: | chr6:14199315-14199674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 206 | 
| Conread position: | 76-417 | 
| Cow position: | chr6:22225716-22225380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 27, 162 | 
| Conread position: | 76-419 | 
| Cow position: | chr6:1887523-1887177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 73 | 
| Conread position: | 76-419 | 
| Cow position: | chr6:39092890-39093239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 0 | 
| Conread position: | 76-419 | 
| Cow position: | chr6:47380956-47381292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 156 | 
| Conread position: | 76-419 | 
| Cow position: | chr6:53739560-53739913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 184 | 
| Conread position: | 77-356 | 
| Cow position: | chr6:6601632-6601352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 71 | 
| Conread position: | 77-387 | 
| Cow position: | chr6:45065880-45065574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 44 | 
| Conread position: | 77-395 | 
| Cow position: | chr6:60814154-60813836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 8e-31 | 
| Alignm gaps (pig, cow): | 104, 78 | 
| Conread position: | 77-398 | 
| Cow position: | chr6:54376835-54377151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 97, 153 | 
| Conread position: | 77-419 | 
| Cow position: | chr6:539411-539757 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 35 | 
| Conread position: | 78-410 | 
| Cow position: | chr6:38917765-38917427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 20 | 
| Conread position: | 79-350 | 
| Cow position: | chr6:68047642-68047371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 124 | 
| Conread position: | 81-419 | 
| Cow position: | chr6:8535516-8535177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 64 | 
| Conread position: | 82-316 | 
| Cow position: | chr6:25822911-25822679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 11, 30 | 
| Conread position: | 89-404 | 
| Cow position: | chr6:31549273-31548971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 71, 60 | 
| Conread position: | 90-337 | 
| Cow position: | chr6:32269962-32269720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 90, 38 | 
| Conread position: | 93-408 | 
| Cow position: | chr6:58915046-58914727 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 114 | 
| Conread position: | 93-417 | 
| Cow position: | chr6:47382885-47383205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 127 | 
| Conread position: | 94-410 | 
| Cow position: | chr6:10536688-10536366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 55 | 
| Conread position: | 97-419 | 
| Cow position: | chr6:41409897-41410223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 37 | 
| Conread position: | 98-333 | 
| Cow position: | chr6:39977942-39978179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 57, 21 | 
| Conread position: | 99-417 | 
| Cow position: | chr6:42481177-42481501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 48 | 
| Conread position: | 100-400 | 
| Cow position: | chr6:3982188-3982505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 101-364 | 
| Cow position: | chr6:54758653-54758921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 93, 21 | 
| Conread position: | 102-409 | 
| Cow position: | chr6:15991643-15991331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 121, 10 | 
| Conread position: | 105-347 | 
| Cow position: | chr6:16274431-16274675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 75, 127 | 
| Conread position: | 107-395 | 
| Cow position: | chr6:32271901-32271612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 123, 76 | 
| Conread position: | 107-419 | 
| Cow position: | chr6:828514-828211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 67 | 
| Conread position: | 108-360 | 
| Cow position: | chr6:49442247-49442506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 61, 155 | 
| Conread position: | 111-356 | 
| Cow position: | chr6:56442169-56441917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 49, 38 | 
| Conread position: | 111-356 | 
| Cow position: | chr6:67213684-67213932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 155 | 
| Conread position: | 111-400 | 
| Cow position: | chr6:7175344-7175057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 65, 121 | 
| Conread position: | 114-402 | 
| Cow position: | chr6:2545503-2545795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 6 | 
| Conread position: | 115-293 | 
| Cow position: | chr6:45856937-45857120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 45, 34 | 
| Conread position: | 116-410 | 
| Cow position: | chr6:28400958-28401258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 33 | 
| Conread position: | 116-410 | 
| Cow position: | chr6:54979216-54978916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 33 | 
| Conread position: | 117-419 | 
| Cow position: | chr6:17456059-17456358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 124, 42 | 
| Conread position: | 121-416 | 
| Cow position: | chr6:16699455-16699752 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 36 | 
| Conread position: | 121-419 | 
| Cow position: | chr6:49626614-49626902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 123-393 | 
| Cow position: | chr6:50973967-50973706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 249, 131 | 
| Conread position: | 124-414 | 
| Cow position: | chr6:3445492-3445197 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 108 | 
| Conread position: | 124-418 | 
| Cow position: | chr6:41192669-41192968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 125-404 | 
| Cow position: | chr6:43393223-43393501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 24 | 
| Conread position: | 127-407 | 
| Cow position: | chr6:18969853-18969581 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 7e-40 | 
| Alignm gaps (pig, cow): | 51, 104 | 
| Conread position: | 129-413 | 
| Cow position: | chr6:4389039-4389328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 131-356 | 
| Cow position: | chr6:39997757-39997527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 131-419 | 
| Cow position: | chr6:47977260-47977553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 13 | 
| Conread position: | 133-404 | 
| Cow position: | chr6:47988255-47988533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 266 | 
| Conread position: | 134-419 | 
| Cow position: | chr6:1817678-1817392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 44 | 
| Conread position: | 134-419 | 
| Cow position: | chr6:6200662-6200951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 65 | 
| Conread position: | 158-394 | 
| Cow position: | chr6:54491582-54491341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 16, 74 | 
| Conread position: | 158-414 | 
| Cow position: | chr6:24126048-24125789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 74 | 
| Conread position: | 158-416 | 
| Cow position: | chr6:8145672-8145406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 21, 73 | 
| Conread position: | 159-407 | 
| Cow position: | chr6:42761319-42761065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 94 | 
| Conread position: | 159-410 | 
| Cow position: | chr6:444572-444315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 94 | 
| Conread position: | 159-410 | 
| Cow position: | chr6:41495481-41495225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 72 | 
| Conread position: | 159-410 | 
| Cow position: | chr6:41823481-41823224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 94 | 
| Conread position: | 159-410 | 
| Cow position: | chr6:57308580-57308837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 97 | 
| Conread position: | 159-419 | 
| Cow position: | chr6:46390915-46391167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 71, 16 | 
| Conread position: | 160-432 | 
| Cow position: | chr6:63197957-63197685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 70, 24 | 
| Conread position: | 161-419 | 
| Cow position: | chr6:40139927-40139673 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 19, 71 | 
| Conread position: | 162-349 | 
| Cow position: | chr6:27150825-27150633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 12, 0 | 
| Conread position: | 165-410 | 
| Cow position: | chr6:41158959-41158708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 66 | 
| Conread position: | 166-421 | 
| Cow position: | chr6:24988404-24988665 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 174 | 
| Conread position: | 170-398 | 
| Cow position: | chr6:65943259-65943492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 82 | 
| Conread position: | 170-419 | 
| Cow position: | chr6:1637589-1637335 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 8, 0 | 
| Conread position: | 171-419 | 
| Cow position: | chr6:16737247-16737495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 59, 7 | 
| Conread position: | 176-316 | 
| Cow position: | chr6:4866124-4865981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 58, 54 | 
| Conread position: | 176-395 | 
| Cow position: | chr6:11780109-11779885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 54, 218 | 
| Conread position: | 176-396 | 
| Cow position: | chr6:11168950-11169175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 176-417 | 
| Cow position: | chr6:13740930-13741168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 87, 54 | 
| Conread position: | 176-419 | 
| Cow position: | chr6:51191009-51191249 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 128, 54 | 
| Conread position: | 176-429 | 
| Cow position: | chr6:46570350-46570610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 65, 54 | 
| Conread position: | 178-370 | 
| Cow position: | chr6:52498087-52498282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 7e-40 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 179-419 | 
| Cow position: | chr6:7254186-7253947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 53, 108 | 
| Conread position: | 180-419 | 
| Cow position: | chr6:3119017-3118767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 49, 13 | 
| Conread position: | 182-409 | 
| Cow position: | chr6:1175545-1175326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 186-419 | 
| Cow position: | chr6:46666351-46666579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 186, 44 | 
| Conread position: | 187-378 | 
| Cow position: | chr6:49579492-49579687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 189-364 | 
| Cow position: | chr6:65870409-65870590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 40, 93 | 
| Conread position: | 189-419 | 
| Cow position: | chr6:42564935-42565160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 183, 41 | 
| Conread position: | 190-419 | 
| Cow position: | chr6:34405716-34405949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 40 | 
| Conread position: | 195-417 | 
| Cow position: | chr6:32211374-32211152 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 35, 114 | 
| Conread position: | 200-417 | 
| Cow position: | chr6:8210332-8210111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 30, 0 | 
Show alignments to all cow chromosomes.
