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Cow genome map

           
Conread name:
           
Emb1-C0005189_M18
        

               
Conread position:
               
1-457
               

               
Cow position:
               
chr1:100741013-100741471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:24202021-24201810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr1:78795014-78794714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
42, 203
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:19145198-19144822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 117
               

               
Conread position:
               
5-145
               

               
Cow position:
               
chr1:76170005-76170148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
5-210
               

               
Cow position:
               
chr1:56748312-56748528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
5-292
               

               
Cow position:
               
chr1:38544726-38544436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
5-303
               

               
Cow position:
               
chr1:45535424-45535746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
59, 180
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr1:52774799-52774467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 175
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr1:79278716-79278378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
133, 49
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr1:42554992-42555371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 136
               

               
Conread position:
               
5-417
               

               
Cow position:
               
chr1:21460590-21461025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
5-444
               

               
Cow position:
               
chr1:57297218-57297682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 46
               

               
Conread position:
               
5-446
               

               
Cow position:
               
chr1:13413749-13414216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 160
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr1:93810167-93810630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
5-455
               

               
Cow position:
               
chr1:6941188-6941653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 167
               

               
Conread position:
               
5-456
               

               
Cow position:
               
chr1:99609088-99609555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 294
               

               
Conread position:
               
5-457
               

               
Cow position:
               
chr1:76470382-76470845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
6-210
               

               
Cow position:
               
chr1:49131399-49131182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
6-210
               

               
Cow position:
               
chr1:53613458-53613261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 51
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr1:80555454-80555220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
188, 17
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr1:69540006-69540374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
54, 185
               

               
Conread position:
               
6-358
               

               
Cow position:
               
chr1:102350033-102349647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
49, 28
               

               
Conread position:
               
6-456
               

               
Cow position:
               
chr1:64302509-64302062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
8-194
               

               
Cow position:
               
chr1:58196379-58196180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr1:57969318-57969107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 134
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr1:31871145-31871484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
8-329
               

               
Cow position:
               
chr1:75443690-75443362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
8-360
               

               
Cow position:
               
chr1:31390857-31390483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
8-386
               

               
Cow position:
               
chr1:41252678-41252285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 174
               

               
Conread position:
               
8-443
               

               
Cow position:
               
chr1:47658080-47658521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 165
               

               
Conread position:
               
8-443
               

               
Cow position:
               
chr1:79165367-79164909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 351
               

               
Conread position:
               
9-188
               

               
Cow position:
               
chr1:15028414-15028592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
129, 27
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr1:71818735-71818446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr1:6939912-6939544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
9-361
               

               
Cow position:
               
chr1:81869001-81868623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 125
               

               
Conread position:
               
9-400
               

               
Cow position:
               
chr1:34685917-34686311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 201
               

               
Conread position:
               
9-449
               

               
Cow position:
               
chr1:29379949-29379498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
9-457
               

               
Cow position:
               
chr1:82338057-82337591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
11-293
               

               
Cow position:
               
chr1:11770564-11770263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr1:57635195-57635517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 123
               

               
Conread position:
               
11-359
               

               
Cow position:
               
chr1:70534206-70533835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
44, 189
               

               
Conread position:
               
11-416
               

               
Cow position:
               
chr1:77880987-77880574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
11-455
               

               
Cow position:
               
chr1:6958607-6959066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 161
               

               
Conread position:
               
11-455
               

               
Cow position:
               
chr1:65103363-65103816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 113
               

               
Conread position:
               
11-456
               

               
Cow position:
               
chr1:57264258-57263805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
11-457
               

               
Cow position:
               
chr1:27145924-27145455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 164
               

               
Conread position:
               
11-457
               

               
Cow position:
               
chr1:74084461-74083999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 85
               

               
Conread position:
               
11-457
               

               
Cow position:
               
chr1:100761819-100762263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 84
               

               
Conread position:
               
13-361
               

               
Cow position:
               
chr1:21787056-21787442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
46, 164
               

               
Conread position:
               
13-361
               

               
Cow position:
               
chr1:100450459-100450070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
14-261
               

               
Cow position:
               
chr1:84116133-84116393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 96
               

               
Conread position:
               
14-456
               

               
Cow position:
               
chr1:45555096-45555553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 5
               

               
Conread position:
               
15-357
               

               
Cow position:
               
chr1:3137664-3138016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
16-287
               

               
Cow position:
               
chr1:63905741-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
45, 90
               

               
Conread position:
               
18-375
               

               
Cow position:
               
chr1:36931893-36932268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 162
               

               
Conread position:
               
18-455
               

               
Cow position:
               
chr1:61884650-61885099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 156
               

               
Conread position:
               
19-361
               

               
Cow position:
               
chr1:37309768-37309413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
19-456
               

               
Cow position:
               
chr1:31348172-31347746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 121
               

               
Conread position:
               
19-457
               

               
Cow position:
               
chr1:25383399-25383858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
19-457
               

               
Cow position:
               
chr1:34856893-34856436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 102
               

               
Conread position:
               
20-306
               

               
Cow position:
               
chr1:28068085-28068394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 290
               

               
Conread position:
               
21-212
               

               
Cow position:
               
chr1:98380839-98380636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
21-239
               

               
Cow position:
               
chr1:29901219-29901004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
21-292
               

               
Cow position:
               
chr1:5873233-5872939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 225
               

               
Conread position:
               
21-322
               

               
Cow position:
               
chr1:55260692-55260373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
39, 272
               

               
Conread position:
               
21-360
               

               
Cow position:
               
chr1:25183863-25184215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 165
               

               
Conread position:
               
21-361
               

               
Cow position:
               
chr1:26702460-26702101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
109, 41
               

               
Conread position:
               
21-410
               

               
Cow position:
               
chr1:39069213-39068806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 148
               

               
Conread position:
               
21-415
               

               
Cow position:
               
chr1:72012065-72011656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
21-416
               

               
Cow position:
               
chr1:68253329-68253748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 149
               

               
Conread position:
               
21-425
               

               
Cow position:
               
chr1:37887048-37886650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
21-443
               

               
Cow position:
               
chr1:83048461-83048019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
21-444
               

               
Cow position:
               
chr1:52435008-52435449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 338
               

               
Conread position:
               
21-457
               

               
Cow position:
               
chr1:53374173-53374616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 134
               

               
Conread position:
               
22-293
               

               
Cow position:
               
chr1:68282533-68282820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 279
               

               
Conread position:
               
22-301
               

               
Cow position:
               
chr1:30034285-30034570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
22-388
               

               
Cow position:
               
chr1:39418379-39417988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 123
               

               
Conread position:
               
22-440
               

               
Cow position:
               
chr1:61724286-61723829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
22-441
               

               
Cow position:
               
chr1:56225216-56225640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 113
               

               
Conread position:
               
22-456
               

               
Cow position:
               
chr1:94226809-94226356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 155
               

               
Conread position:
               
22-457
               

               
Cow position:
               
chr1:22628900-22628467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
22-457
               

               
Cow position:
               
chr1:91066409-91065968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 121
               

               
Conread position:
               
24-167
               

               
Cow position:
               
chr1:7022200-7022349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
24-170
               

               
Cow position:
               
chr1:89834976-89835125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
24-180
               

               
Cow position:
               
chr1:51983334-51983488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
120, 44
               

               
Conread position:
               
24-200
               

               
Cow position:
               
chr1:73756834-73757012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
31, 96
               

               
Conread position:
               
24-210
               

               
Cow position:
               
chr1:71946629-71946441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
24-210
               

               
Cow position:
               
chr1:82861514-82861715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
24-247
               

               
Cow position:
               
chr1:69941227-69940988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
24-286
               

               
Cow position:
               
chr1:33811675-33811952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
24-287
               

               
Cow position:
               
chr1:666101-666389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
24-295
               

               
Cow position:
               
chr1:1801885-1802170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
24-303
               

               
Cow position:
               
chr1:43380288-43379985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
24-329
               

               
Cow position:
               
chr1:11772340-11772016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
30, 202
               

               
Conread position:
               
24-329
               

               
Cow position:
               
chr1:60032857-60032530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
24-330
               

               
Cow position:
               
chr1:22448843-22448514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 144
               

               
Conread position:
               
24-334
               

               
Cow position:
               
chr1:68912496-68912801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
188, 37
               

               
Conread position:
               
24-336
               

               
Cow position:
               
chr1:4374597-4374261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
24-348
               

               
Cow position:
               
chr1:56719054-56719382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
37, 69
               

               
Conread position:
               
24-355
               

               
Cow position:
               
chr1:3657626-3657267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
24-355
               

               
Cow position:
               
chr1:30413326-30413689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 358
               

               
Conread position:
               
24-369
               

               
Cow position:
               
chr1:102647528-102647172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 120
               

               
Conread position:
               
24-398
               

               
Cow position:
               
chr1:80988087-80988481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
31, 312
               

               
Conread position:
               
24-403
               

               
Cow position:
               
chr1:80336509-80336102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
23, 360
               

               
Conread position:
               
24-430
               

               
Cow position:
               
chr1:45007207-45007640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 326
               

               
Conread position:
               
24-435
               

               
Cow position:
               
chr1:52488217-52487813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 54
               

               
Conread position:
               
24-443
               

               
Cow position:
               
chr1:12222864-12222431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
24-443
               

               
Cow position:
               
chr1:66898737-66898321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
24-443
               

               
Cow position:
               
chr1:69264563-69265001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
24-452
               

               
Cow position:
               
chr1:8363-8802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 218
               

               
Conread position:
               
24-456
               

               
Cow position:
               
chr1:78091773-78092228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
24, 364
               

               
Conread position:
               
24-456
               

               
Cow position:
               
chr1:79590841-79591292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
31, 231
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:1877768-1878212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 236
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:2075587-2075161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
34, 94
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:23634159-23633738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 97
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:51394160-51394607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 160
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:53622706-53623143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:61742227-61741775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:81228590-81228147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:81913411-81912953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 170
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:95100704-95101140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:100324985-100324569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
26, 108
               

               
Conread position:
               
24-457
               

               
Cow position:
               
chr1:101822755-101822315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 120
               

               
Conread position:
               
25-289
               

               
Cow position:
               
chr1:79663924-79663648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
25-323
               

               
Cow position:
               
chr1:57639778-57639452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
30, 137
               

               
Conread position:
               
25-360
               

               
Cow position:
               
chr1:20001007-20000644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 121
               

               
Conread position:
               
25-380
               

               
Cow position:
               
chr1:68827163-68826787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
25-443
               

               
Cow position:
               
chr1:87888143-87888563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
25-443
               

               
Cow position:
               
chr1:101792359-101791944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
25-448
               

               
Cow position:
               
chr1:76019936-76019519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 36
               

               
Conread position:
               
25-457
               

               
Cow position:
               
chr1:87072449-87072883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
184, 129
               

               
Conread position:
               
26-410
               

               
Cow position:
               
chr1:1165343-1165755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
27-221
               

               
Cow position:
               
chr1:67014128-67014335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
27-230
               

               
Cow position:
               
chr1:61149789-61149583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 182
               

               
Conread position:
               
27-241
               

               
Cow position:
               
chr1:732181-731969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 124
               

               
Conread position:
               
27-448
               

               
Cow position:
               
chr1:1053332-1053759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 232
               

               
Conread position:
               
27-457
               

               
Cow position:
               
chr1:21835692-21836151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 152
               

               
Conread position:
               
27-457
               

               
Cow position:
               
chr1:48444438-48444002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 87
               

               
Conread position:
               
28-401
               

               
Cow position:
               
chr1:4032379-4032778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
28-455
               

               
Cow position:
               
chr1:54199635-54199207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 51
               

               
Conread position:
               
29-178
               

               
Cow position:
               
chr1:6240362-6240512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr1:37646255-37646033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 115
               

               
Conread position:
               
29-243
               

               
Cow position:
               
chr1:56711872-56711645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
93, 31
               

               
Conread position:
               
29-315
               

               
Cow position:
               
chr1:55163668-55163970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 145
               

               
Conread position:
               
29-329
               

               
Cow position:
               
chr1:94211980-94212296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
31, 225
               

               
Conread position:
               
29-361
               

               
Cow position:
               
chr1:69539445-69539797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
29-361
               

               
Cow position:
               
chr1:100551716-100552081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
29-369
               

               
Cow position:
               
chr1:49795746-49796105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
26, 150
               

               
Conread position:
               
29-379
               

               
Cow position:
               
chr1:68845734-68845366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 32
               

               
Conread position:
               
29-382
               

               
Cow position:
               
chr1:31190358-31189994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
29-441
               

               
Cow position:
               
chr1:46940116-46939706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 225
               

               
Conread position:
               
29-443
               

               
Cow position:
               
chr1:1956583-1956161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 145
               

               
Conread position:
               
29-455
               

               
Cow position:
               
chr1:37707223-37706782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 149
               

               
Conread position:
               
29-457
               

               
Cow position:
               
chr1:10778320-10778743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 98
               

               
Conread position:
               
29-457
               

               
Cow position:
               
chr1:100421589-100422009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
30-207
               

               
Cow position:
               
chr1:8532465-8532283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
25, 5
               

               
Conread position:
               
30-280
               

               
Cow position:
               
chr1:3776867-3776603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
30-329
               

               
Cow position:
               
chr1:101551204-101551532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 188
               

               
Conread position:
               
30-361
               

               
Cow position:
               
chr1:5135944-5135604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
30-361
               

               
Cow position:
               
chr1:35162151-35162516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
30-361
               

               
Cow position:
               
chr1:82880412-82880750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
30-455
               

               
Cow position:
               
chr1:85162800-85162341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
30, 154
               

               
Conread position:
               
31-210
               

               
Cow position:
               
chr1:31765647-31765453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
31-212
               

               
Cow position:
               
chr1:64160089-64160278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
31-214
               

               
Cow position:
               
chr1:81363742-81363922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
31-215
               

               
Cow position:
               
chr1:3757700-3757895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
31-232
               

               
Cow position:
               
chr1:43211526-43211729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
31-286
               

               
Cow position:
               
chr1:67290614-67290884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 174
               

               
Conread position:
               
31-288
               

               
Cow position:
               
chr1:78783294-78783572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
26, 206
               

               
Conread position:
               
31-293
               

               
Cow position:
               
chr1:99095111-99095393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
31-295
               

               
Cow position:
               
chr1:82504715-82505007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
31-300
               

               
Cow position:
               
chr1:88970811-88971091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
31-301
               

               
Cow position:
               
chr1:100770987-100770716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
178, 10
               

               
Conread position:
               
31-303
               

               
Cow position:
               
chr1:95017765-95017490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
101, 136
               

               
Conread position:
               
31-360
               

               
Cow position:
               
chr1:16855940-16855594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 139
               

               
Conread position:
               
31-361
               

               
Cow position:
               
chr1:8349563-8349219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
31-361
               

               
Cow position:
               
chr1:66430049-66430397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
31-361
               

               
Cow position:
               
chr1:95215438-95215084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 231
               

               
Conread position:
               
31-367
               

               
Cow position:
               
chr1:81355955-81355591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 139
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr1:42874199-42873826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
24, 142
               

               
Conread position:
               
31-410
               

               
Cow position:
               
chr1:33997164-33996775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
33, 146
               

               
Conread position:
               
31-410
               

               
Cow position:
               
chr1:67821462-67821070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 140
               

               
Conread position:
               
31-410
               

               
Cow position:
               
chr1:90868688-90868286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 135
               

               
Conread position:
               
31-443
               

               
Cow position:
               
chr1:6103165-6102727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
31-443
               

               
Cow position:
               
chr1:45020055-45019633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 131
               

               
Conread position:
               
31-446
               

               
Cow position:
               
chr1:89742264-89741802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
24, 221
               

               
Conread position:
               
31-449
               

               
Cow position:
               
chr1:52496524-52496952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 256
               

               
Conread position:
               
31-457
               

               
Cow position:
               
chr1:24133307-24132874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 138
               

               
Conread position:
               
31-457
               

               
Cow position:
               
chr1:48105686-48105236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 142
               

               
Conread position:
               
31-457
               

               
Cow position:
               
chr1:54258315-54258758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
31-457
               

               
Cow position:
               
chr1:72035181-72034739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
31-457
               

               
Cow position:
               
chr1:86113665-86113207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
32-219
               

               
Cow position:
               
chr1:43893677-43893868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
54, 146
               

               
Conread position:
               
32-274
               

               
Cow position:
               
chr1:75967185-75967441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
28, 111
               

               
Conread position:
               
32-360
               

               
Cow position:
               
chr1:62291932-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
6, 30
               

               
Conread position:
               
32-368
               

               
Cow position:
               
chr1:89349726-89350078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
32-400
               

               
Cow position:
               
chr1:53458454-53458840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
37, 104
               

               
Conread position:
               
32-410
               

               
Cow position:
               
chr1:24534494-24534102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
32-443
               

               
Cow position:
               
chr1:11226496-11226056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
32-452
               

               
Cow position:
               
chr1:99642621-99642185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 153
               

               
Conread position:
               
32-455
               

               
Cow position:
               
chr1:72069078-72068644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
32-457
               

               
Cow position:
               
chr1:5023991-5023547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
32-457
               

               
Cow position:
               
chr1:7442732-7443171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 38
               

               
Conread position:
               
32-457
               

               
Cow position:
               
chr1:43352900-43352464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
32-457
               

               
Cow position:
               
chr1:63435054-63434609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
32-457
               

               
Cow position:
               
chr1:96365423-96365838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
33-316
               

               
Cow position:
               
chr1:102105485-102105780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
33-328
               

               
Cow position:
               
chr1:11102460-11102752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 25
               

               
Conread position:
               
33-436
               

               
Cow position:
               
chr1:52994774-52995200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 143
               

               
Conread position:
               
33-440
               

               
Cow position:
               
chr1:48580881-48581300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
34-280
               

               
Cow position:
               
chr1:98558024-98557768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
34-361
               

               
Cow position:
               
chr1:75141763-75142103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
35-226
               

               
Cow position:
               
chr1:32631222-32631419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
115, 19
               

               
Conread position:
               
35-238
               

               
Cow position:
               
chr1:98708194-98708410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
35-241
               

               
Cow position:
               
chr1:91142402-91142183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
35-273
               

               
Cow position:
               
chr1:5409863-5409606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
35-283
               

               
Cow position:
               
chr1:99638028-99637761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
35-284
               

               
Cow position:
               
chr1:24655712-24655978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 214
               

               
Conread position:
               
35-286
               

               
Cow position:
               
chr1:81472631-81472893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 101
               

               
Conread position:
               
35-298
               

               
Cow position:
               
chr1:3752191-3751904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
35-298
               

               
Cow position:
               
chr1:55135588-55135865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
35-303
               

               
Cow position:
               
chr1:73561897-73561608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
35-322
               

               
Cow position:
               
chr1:57396177-57395874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 212
               

               
Conread position:
               
35-328
               

               
Cow position:
               
chr1:85596699-85597006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 75
               

               
Conread position:
               
35-329
               

               
Cow position:
               
chr1:20204778-20205096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 206
               

               
Conread position:
               
35-329
               

               
Cow position:
               
chr1:42138617-42138927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
26, 130
               

               
Conread position:
               
35-355
               

               
Cow position:
               
chr1:53424939-53425277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
35-360
               

               
Cow position:
               
chr1:71135905-71136257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
20, 137
               

               
Conread position:
               
35-361
               

               
Cow position:
               
chr1:71045507-71045851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
25, 137
               

               
Conread position:
               
35-361
               

               
Cow position:
               
chr1:92963150-92963494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 316
               

               
Conread position:
               
35-361
               

               
Cow position:
               
chr1:100705885-100706232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 276
               

               
Conread position:
               
35-371
               

               
Cow position:
               
chr1:46218335-46218690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 135
               

               
Conread position:
               
35-374
               

               
Cow position:
               
chr1:39427229-39426884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
35-376
               

               
Cow position:
               
chr1:45289121-45288752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
35-395
               

               
Cow position:
               
chr1:95176687-95177071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 142
               

               
Conread position:
               
35-405
               

               
Cow position:
               
chr1:53308640-53308250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 131
               

               
Conread position:
               
35-438
               

               
Cow position:
               
chr1:53520658-53521082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 324
               

               
Conread position:
               
35-438
               

               
Cow position:
               
chr1:69695257-69694830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 331
               

               
Conread position:
               
35-443
               

               
Cow position:
               
chr1:22730513-22730906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
35-443
               

               
Cow position:
               
chr1:34159584-34160001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 323
               

               
Conread position:
               
35-443
               

               
Cow position:
               
chr1:38278293-38277853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
20, 336
               

               
Conread position:
               
35-443
               

               
Cow position:
               
chr1:49433505-49433088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
35-443
               

               
Cow position:
               
chr1:68619185-68618762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
35-444
               

               
Cow position:
               
chr1:78857570-78857152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 149
               

               
Conread position:
               
35-452
               

               
Cow position:
               
chr1:11853938-11853502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 294
               

               
Conread position:
               
35-457
               

               
Cow position:
               
chr1:3323610-3324063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 338
               

               
Conread position:
               
35-457
               

               
Cow position:
               
chr1:21577557-21577999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
25, 327
               

               
Conread position:
               
35-457
               

               
Cow position:
               
chr1:68854927-68855355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 157
               

               
Conread position:
               
35-457
               

               
Cow position:
               
chr1:73546163-73545719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 146
               

               
Conread position:
               
35-457
               

               
Cow position:
               
chr1:93528442-93528883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
25, 311
               

               
Conread position:
               
35-457
               

               
Cow position:
               
chr1:97231728-97232160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
37-195
               

               
Cow position:
               
chr1:5990668-5990832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
37-437
               

               
Cow position:
               
chr1:84239353-84238944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 101
               

               
Conread position:
               
37-452
               

               
Cow position:
               
chr1:71119265-71119705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
38-206
               

               
Cow position:
               
chr1:71325492-71325317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
38-320
               

               
Cow position:
               
chr1:3244605-3244908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
38-352
               

               
Cow position:
               
chr1:90640780-90641125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
18, 326
               

               
Conread position:
               
38-357
               

               
Cow position:
               
chr1:51531528-51531853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
38-393
               

               
Cow position:
               
chr1:50931214-50930841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
38-441
               

               
Cow position:
               
chr1:13548235-13547809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
21, 323
               

               
Conread position:
               
38-443
               

               
Cow position:
               
chr1:96964074-96964492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 206
               

               
Conread position:
               
38-449
               

               
Cow position:
               
chr1:11914122-11913697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 319
               

               
Conread position:
               
38-456
               

               
Cow position:
               
chr1:98594326-98594779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 258
               

               
Conread position:
               
38-457
               

               
Cow position:
               
chr1:18937079-18936648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 243
               

               
Conread position:
               
38-457
               

               
Cow position:
               
chr1:102767967-102768364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
39-210
               

               
Cow position:
               
chr1:74013511-74013325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
39-296
               

               
Cow position:
               
chr1:3035237-3034967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 133
               

               
Conread position:
               
39-305
               

               
Cow position:
               
chr1:4573275-4573561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
5, 136
               

               
Conread position:
               
39-371
               

               
Cow position:
               
chr1:28176756-28177119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 297
               

               
Conread position:
               
39-391
               

               
Cow position:
               
chr1:56477351-56477722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
39-398
               

               
Cow position:
               
chr1:80422057-80422407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
39-443
               

               
Cow position:
               
chr1:102756663-102756262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
39-457
               

               
Cow position:
               
chr1:16767329-16766897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 144
               

               
Conread position:
               
39-457
               

               
Cow position:
               
chr1:22823693-22824098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
39-457
               

               
Cow position:
               
chr1:51445635-51446071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 265
               

               
Conread position:
               
40-248
               

               
Cow position:
               
chr1:4293821-4294036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
40-307
               

               
Cow position:
               
chr1:68446038-68445766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
40-329
               

               
Cow position:
               
chr1:20002479-20002163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
40-329
               

               
Cow position:
               
chr1:70297029-70297347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 5
               

               
Conread position:
               
40-332
               

               
Cow position:
               
chr1:97622441-97622148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 131
               

               
Conread position:
               
40-457
               

               
Cow position:
               
chr1:31845792-31846187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
41-361
               

               
Cow position:
               
chr1:55229742-55230082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
41-456
               

               
Cow position:
               
chr1:85867356-85867788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 28
               

               
Conread position:
               
41-457
               

               
Cow position:
               
chr1:54732699-54732268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
12, 86
               

               
Conread position:
               
41-457
               

               
Cow position:
               
chr1:101834598-101835005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
42-248
               

               
Cow position:
               
chr1:20287876-20288098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
82, 132
               

               
Conread position:
               
43-457
               

               
Cow position:
               
chr1:10942329-10941909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 310
               

               
Conread position:
               
43-457
               

               
Cow position:
               
chr1:10964057-10964477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 310
               

               
Conread position:
               
43-457
               

               
Cow position:
               
chr1:44506728-44507157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
44-321
               

               
Cow position:
               
chr1:26729489-26729779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
45-430
               

               
Cow position:
               
chr1:51769847-51770255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
46-210
               

               
Cow position:
               
chr1:100512359-100512533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
48-456
               

               
Cow position:
               
chr1:53369831-53370272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
13, 151
               

               
Conread position:
               
48-457
               

               
Cow position:
               
chr1:55357521-55357100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 246
               

               
Conread position:
               
49-443
               

               
Cow position:
               
chr1:88926611-88926206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
123, 98
               

               
Conread position:
               
51-443
               

               
Cow position:
               
chr1:15333650-15334061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
52-247
               

               
Cow position:
               
chr1:53540161-53540368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
8, 122
               

               
Conread position:
               
52-360
               

               
Cow position:
               
chr1:20099135-20099470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 126
               

               
Conread position:
               
52-450
               

               
Cow position:
               
chr1:6305097-6304698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
72, 304
               

               
Conread position:
               
54-207
               

               
Cow position:
               
chr1:7449905-7450061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
54-283
               

               
Cow position:
               
chr1:64962881-64962648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
122, 39
               

               
Conread position:
               
54-312
               

               
Cow position:
               
chr1:31235158-31234883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
54-329
               

               
Cow position:
               
chr1:43358241-43357942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
54-351
               

               
Cow position:
               
chr1:10655251-10655571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
70, 281
               

               
Conread position:
               
54-359
               

               
Cow position:
               
chr1:56634872-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
70, 144
               

               
Conread position:
               
54-361
               

               
Cow position:
               
chr1:4290932-4291270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
54-361
               

               
Cow position:
               
chr1:52052930-52052611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
189, 95
               

               
Conread position:
               
54-362
               

               
Cow position:
               
chr1:73761578-73761254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
54-403
               

               
Cow position:
               
chr1:43389274-43388910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 293
               

               
Conread position:
               
54-443
               

               
Cow position:
               
chr1:81515013-81515412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 149
               

               
Conread position:
               
55-315
               

               
Cow position:
               
chr1:68951406-68951682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 117
               

               
Conread position:
               
56-457
               

               
Cow position:
               
chr1:43872555-43872120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
57-457
               

               
Cow position:
               
chr1:49317736-49317312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 346
               

               
Conread position:
               
58-457
               

               
Cow position:
               
chr1:4691370-4691777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
58-457
               

               
Cow position:
               
chr1:34771726-34771310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
58-457
               

               
Cow position:
               
chr1:64804330-64803908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 306
               

               
Conread position:
               
58-457
               

               
Cow position:
               
chr1:78809661-78810069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 109
               

               
Conread position:
               
59-392
               

               
Cow position:
               
chr1:52956038-52956388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 81
               

               
Conread position:
               
59-392
               

               
Cow position:
               
chr1:93043804-93044148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
65, 115
               

               
Conread position:
               
60-457
               

               
Cow position:
               
chr1:98461070-98461504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 107
               

               
Conread position:
               
61-241
               

               
Cow position:
               
chr1:45673492-45673682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
62-298
               

               
Cow position:
               
chr1:98310842-98311104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
62-304
               

               
Cow position:
               
chr1:43448041-43447789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
62-443
               

               
Cow position:
               
chr1:31348659-31348262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
90, 183
               

               
Conread position:
               
62-457
               

               
Cow position:
               
chr1:16962232-16961805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 358
               

               
Conread position:
               
62-457
               

               
Cow position:
               
chr1:89076854-89076434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
63-457
               

               
Cow position:
               
chr1:8287831-8287441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 141
               

               
Conread position:
               
65-361
               

               
Cow position:
               
chr1:74956239-74955915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
66-397
               

               
Cow position:
               
chr1:19885170-19885517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
57, 107
               

               
Conread position:
               
67-355
               

               
Cow position:
               
chr1:40482625-40482313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
71-320
               

               
Cow position:
               
chr1:71643873-71643603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
71-393
               

               
Cow position:
               
chr1:75382782-75383102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
44, 103
               

               
Conread position:
               
72-359
               

               
Cow position:
               
chr1:58825340-58825645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 96
               

               
Conread position:
               
73-456
               

               
Cow position:
               
chr1:43340830-43340445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
51, 273
               

               
Conread position:
               
75-400
               

               
Cow position:
               
chr1:32001525-32001182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
75-452
               

               
Cow position:
               
chr1:43311974-43311584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
76-457
               

               
Cow position:
               
chr1:46030557-46030175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 173
               

               
Conread position:
               
77-361
               

               
Cow position:
               
chr1:4414411-4414103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
66, 91
               

               
Conread position:
               
78-273
               

               
Cow position:
               
chr1:32013754-32013963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
78-329
               

               
Cow position:
               
chr1:72103644-72103919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
69, 168
               

               
Conread position:
               
78-361
               

               
Cow position:
               
chr1:68862833-68863137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
78-457
               

               
Cow position:
               
chr1:28563771-28563372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 302
               

               
Conread position:
               
81-457
               

               
Cow position:
               
chr1:90976282-90975887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 165
               

               
Conread position:
               
84-217
               

               
Cow position:
               
chr1:49753734-49753871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
84-297
               

               
Cow position:
               
chr1:81470932-81471166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 90
               

               
Conread position:
               
84-300
               

               
Cow position:
               
chr1:64421134-64421367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:95654912-95654650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 99
               

               
Conread position:
               
84-361
               

               
Cow position:
               
chr1:94261351-94261642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
124, 93
               

               
Conread position:
               
84-415
               

               
Cow position:
               
chr1:99570661-99570331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
84-457
               

               
Cow position:
               
chr1:40192874-40192514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
85-325
               

               
Cow position:
               
chr1:51654215-51654489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
85-329
               

               
Cow position:
               
chr1:6788485-6788214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 89
               

               
Conread position:
               
85-376
               

               
Cow position:
               
chr1:89497770-89498066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
85-452
               

               
Cow position:
               
chr1:70343844-70344229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 197
               

               
Conread position:
               
86-316
               

               
Cow position:
               
chr1:82443651-82443399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
88-401
               

               
Cow position:
               
chr1:97778802-97779129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 137
               

               
Conread position:
               
88-455
               

               
Cow position:
               
chr1:83072251-83072629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
89-443
               

               
Cow position:
               
chr1:13810457-13810824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 159
               

               
Conread position:
               
89-457
               

               
Cow position:
               
chr1:724543-724928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
90-379
               

               
Cow position:
               
chr1:91039367-91039053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 296
               

               
Conread position:
               
92-322
               

               
Cow position:
               
chr1:101867167-101867412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
92-325
               

               
Cow position:
               
chr1:9166961-9166713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
32, 49
               

               
Conread position:
               
92-354
               

               
Cow position:
               
chr1:43703226-43703508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
92-398
               

               
Cow position:
               
chr1:93554663-93554973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
110, 28
               

               
Conread position:
               
92-457
               

               
Cow position:
               
chr1:33207063-33206685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
92-457
               

               
Cow position:
               
chr1:54156929-54156545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
31, 296
               

               
Conread position:
               
93-446
               

               
Cow position:
               
chr1:61742651-61742275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 304
               

               
Conread position:
               
94-398
               

               
Cow position:
               
chr1:42398383-42398058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 267
               

               
Conread position:
               
94-443
               

               
Cow position:
               
chr1:63530394-63530732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
149, 43
               

               
Conread position:
               
95-446
               

               
Cow position:
               
chr1:84910816-84910465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
95-457
               

               
Cow position:
               
chr1:59518736-59519100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
96-360
               

               
Cow position:
               
chr1:75933088-75933371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
96-457
               

               
Cow position:
               
chr1:68763866-68763495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
96-457
               

               
Cow position:
               
chr1:86578764-86579158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
98-399
               

               
Cow position:
               
chr1:24445811-24445492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
98-457
               

               
Cow position:
               
chr1:24778161-24777795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
98-457
               

               
Cow position:
               
chr1:65318399-65318766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 41
               

               
Conread position:
               
101-456
               

               
Cow position:
               
chr1:20667921-20667562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
101-457
               

               
Cow position:
               
chr1:76613305-76612943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
102-457
               

               
Cow position:
               
chr1:101836867-101837244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 274
               

               
Conread position:
               
105-361
               

               
Cow position:
               
chr1:42545959-42545673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
108-457
               

               
Cow position:
               
chr1:85688013-85688374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
17, 127
               

               
Conread position:
               
111-361
               

               
Cow position:
               
chr1:101632508-101632231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
111-397
               

               
Cow position:
               
chr1:22525716-22526013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
111-400
               

               
Cow position:
               
chr1:101280885-101280597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
111-457
               

               
Cow position:
               
chr1:21560870-21561209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
111-457
               

               
Cow position:
               
chr1:55429124-55428764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 5
               

               
Conread position:
               
116-361
               

               
Cow position:
               
chr1:96472286-96472536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 49
               

               
Conread position:
               
116-394
               

               
Cow position:
               
chr1:56225635-56225925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
116-398
               

               
Cow position:
               
chr1:57420885-57420599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 7
               

               
Conread position:
               
120-340
               

               
Cow position:
               
chr1:101946867-101946636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
120-402
               

               
Cow position:
               
chr1:41115869-41115573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
120-436
               

               
Cow position:
               
chr1:65909372-65909688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
121-361
               

               
Cow position:
               
chr1:60281215-60281479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 45
               

               
Conread position:
               
121-409
               

               
Cow position:
               
chr1:97938810-97939105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
17, 134
               

               
Conread position:
               
121-421
               

               
Cow position:
               
chr1:97696585-97696908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
18, 267
               

               
Conread position:
               
121-451
               

               
Cow position:
               
chr1:87197674-87198001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 18
               

               
Conread position:
               
121-457
               

               
Cow position:
               
chr1:7748064-7748405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
121-457
               

               
Cow position:
               
chr1:7752230-7752569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
121-457
               

               
Cow position:
               
chr1:96081331-96081667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
122-457
               

               
Cow position:
               
chr1:98413608-98413965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 266
               

               
Conread position:
               
123-443
               

               
Cow position:
               
chr1:77683206-77683547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
124-392
               

               
Cow position:
               
chr1:31272591-31272304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
127-447
               

               
Cow position:
               
chr1:5579906-5580255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
130-455
               

               
Cow position:
               
chr1:72105270-72105587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
133-405
               

               
Cow position:
               
chr1:85550220-85549927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
136-457
               

               
Cow position:
               
chr1:11172235-11172557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 211
               

               
Conread position:
               
136-457
               

               
Cow position:
               
chr1:38418895-38419215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
136-457
               

               
Cow position:
               
chr1:64572374-64572703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
138-303
               

               
Cow position:
               
chr1:93228388-93228564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
138-361
               

               
Cow position:
               
chr1:24407024-24406791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
138-410
               

               
Cow position:
               
chr1:23512792-23512505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
138-444
               

               
Cow position:
               
chr1:2976132-2975815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
65, 138
               

               
Conread position:
               
139-437
               

               
Cow position:
               
chr1:91811651-91811949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
65, 26
               

               
Conread position:
               
139-457
               

               
Cow position:
               
chr1:8360034-8359692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 26
               

               
Conread position:
               
142-457
               

               
Cow position:
               
chr1:47886622-47886291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 168
               

               
Conread position:
               
144-443
               

               
Cow position:
               
chr1:78079596-78079896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
146-393
               

               
Cow position:
               
chr1:6854409-6854178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
148-418
               

               
Cow position:
               
chr1:42869063-42868777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
155-457
               

               
Cow position:
               
chr1:72813492-72813806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 119
               

               
Conread position:
               
157-457
               

               
Cow position:
               
chr1:42482084-42482389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 113
               

               
Conread position:
               
158-457
               

               
Cow position:
               
chr1:84104171-84103869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
159-443
               

               
Cow position:
               
chr1:6826405-6826119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
49, 6
               

               
Conread position:
               
162-393
               

               
Cow position:
               
chr1:78794339-78794097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr1:43822287-43822505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr1:61543032-61542813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
165-456
               

               
Cow position:
               
chr1:31795114-31794818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
29, 205
               

               
Conread position:
               
167-443
               

               
Cow position:
               
chr1:81580066-81580381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
168-457
               

               
Cow position:
               
chr1:98511826-98512126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
24, 8
               

               
Conread position:
               
169-457
               

               
Cow position:
               
chr1:86062093-86061788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 138
               

               
Conread position:
               
172-435
               

               
Cow position:
               
chr1:68672698-68672423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 125
               

               
Conread position:
               
174-457
               

               
Cow position:
               
chr1:71350825-71350535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 176
               

               
Conread position:
               
177-415
               

               
Cow position:
               
chr1:55818962-55819204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 131
               

               
Conread position:
               
177-457
               

               
Cow position:
               
chr1:71666027-71665745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 6
               

               
Conread position:
               
178-443
               

               
Cow position:
               
chr1:60986895-60987165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 168
               

               
Conread position:
               
193-410
               

               
Cow position:
               
chr1:6240354-6240130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
193-438
               

               
Cow position:
               
chr1:96599356-96599127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
194-432
               

               
Cow position:
               
chr1:45670562-45670813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
200-357
               

               
Cow position:
               
chr1:30504433-30504603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
202-397
               

               
Cow position:
               
chr1:48769737-48769947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
202-416
               

               
Cow position:
               
chr1:6972463-6972690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 218
               

               
Conread position:
               
202-437
               

               
Cow position:
               
chr1:186343-186105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 135
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr1:30983557-30983303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr1:31855302-31855040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr1:45223513-45223765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 135
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr1:46030893-46031150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
26, 145
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr1:74832360-74832617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr1:92684758-92684492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr1:95153153-95153434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr1:100474165-100474428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
42, 179
               

               
Conread position:
               
203-457
               

               
Cow position:
               
chr1:98575980-98576263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 258
               

               
Conread position:
               
204-457
               

               
Cow position:
               
chr1:102753788-102754040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 142
               

               
Conread position:
               
207-457
               

               
Cow position:
               
chr1:88359819-88360074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
46, 166
               

               
Conread position:
               
210-457
               

               
Cow position:
               
chr1:99221413-99221153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
33, 166
               

               
Conread position:
               
211-457
               

               
Cow position:
               
chr1:8347066-8347341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 183
               

               
Conread position:
               
221-457
               

               
Cow position:
               
chr1:45478900-45478656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
110, 18
               

               
Conread position:
               
227-441
               

               
Cow position:
               
chr1:101177475-101177693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
17, 111
               

               
Conread position:
               
230-452
               

               
Cow position:
               
chr1:7452871-7453098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 136
               

               
Conread position:
               
230-457
               

               
Cow position:
               
chr1:95835836-95835606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 116
               

               
Conread position:
               
233-457
               

               
Cow position:
               
chr1:8670742-8670977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 139
               

               
Conread position:
               
233-457
               

               
Cow position:
               
chr1:72422439-72422217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 95
               

               
Conread position:
               
234-410
               

               
Cow position:
               
chr1:9143688-9143867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 119
               

               
Conread position:
               
234-457
               

               
Cow position:
               
chr1:98897725-98897501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
236-454
               

               
Cow position:
               
chr1:2462355-2462557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
236-457
               

               
Cow position:
               
chr1:64328891-64329121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
239-457
               

               
Cow position:
               
chr1:21093089-21093308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 106
               

               
Conread position:
               
240-452
               

               
Cow position:
               
chr1:14106645-14106424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
243-457
               

               
Cow position:
               
chr1:81390901-81391111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
57, 92
               

               
Conread position:
               
245-457
               

               
Cow position:
               
chr1:65638896-65639112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
245-457
               

               
Cow position:
               
chr1:95618623-95618830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
246-379
               

               
Cow position:
               
chr1:88111857-88111994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
85, 135
               

               
Conread position:
               
246-457
               

               
Cow position:
               
chr1:38706872-38706664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 89
               

               
Conread position:
               
246-457
               

               
Cow position:
               
chr1:59020644-59020858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
56, 81
               

               
Conread position:
               
246-457
               

               
Cow position:
               
chr1:84010754-84010977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
247-457
               

               
Cow position:
               
chr1:63992353-63992144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 116
               

               
Conread position:
               
247-457
               

               
Cow position:
               
chr1:102648261-102648469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 91
               

               
Conread position:
               
248-456
               

               
Cow position:
               
chr1:36688394-36688192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
248-457
               

               
Cow position:
               
chr1:85712424-85712650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
250-396
               

               
Cow position:
               
chr1:56711613-56711464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 115
               

               
Conread position:
               
250-457
               

               
Cow position:
               
chr1:17317370-17317154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
250-457
               

               
Cow position:
               
chr1:77739708-77739913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 85
               

               
Conread position:
               
250-457
               

               
Cow position:
               
chr1:87095228-87095022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
251-443
               

               
Cow position:
               
chr1:19304559-19304773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
253-443
               

               
Cow position:
               
chr1:62997788-62997974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
253-457
               

               
Cow position:
               
chr1:6381761-6381965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 93
               

               
Conread position:
               
253-457
               

               
Cow position:
               
chr1:45315647-45315442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
253-457
               

               
Cow position:
               
chr1:48214166-48213956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 82
               

               
Conread position:
               
253-457
               

               
Cow position:
               
chr1:73721349-73721553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 105
               

               
Conread position:
               
263-457
               

               
Cow position:
               
chr1:95152870-95153063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
267-457
               

               
Cow position:
               
chr1:73719464-73719660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
272-457
               

               
Cow position:
               
chr1:13828578-13828398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
277-457
               

               
Cow position:
               
chr1:38544239-38544057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
280-457
               

               
Cow position:
               
chr1:731955-731781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
283-457
               

               
Cow position:
               
chr1:53540594-53540775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 88
               

               
Conread position:
               
286-457
               

               
Cow position:
               
chr1:5872753-5872585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
287-457
               

               
Cow position:
               
chr1:23180119-23180295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 85
               
Show alignments to all cow chromosomes.