Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 1-567 |
| Cow position: | chr10:31524447-31524979 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 123 |
| Conread position: | 1-668 |
| Cow position: | chr10:8326944-8326311 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 37 |
| Conread position: | 2-664 |
| Cow position: | chr10:55093611-55094271 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 94 |
| Conread position: | 13-664 |
| Cow position: | chr10:11685315-11684641 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 220 |
| Conread position: | 16-679 |
| Cow position: | chr10:11821128-11821772 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 55 |
| Conread position: | 140-390 |
| Cow position: | chr10:41632107-41632344 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 183, 12 |
| Conread position: | 141-365 |
| Cow position: | chr10:51952154-51951934 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-390 |
| Cow position: | chr10:1377715-1377959 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-394 |
| Cow position: | chr10:13092753-13093006 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 84 |
| Conread position: | 141-402 |
| Cow position: | chr10:37770840-37771100 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-601 |
| Cow position: | chr10:31538137-31538588 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 11 |
| Conread position: | 141-663 |
| Cow position: | chr10:11698711-11699247 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr10:19495818-19495276 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 141-664 |
| Cow position: | chr10:21400203-21399667 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-664 |
| Cow position: | chr10:26597087-26597617 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-664 |
| Cow position: | chr10:41157915-41158446 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr10:41877385-41877922 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 141-673 |
| Cow position: | chr10:19512079-19512604 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 84 |
| Conread position: | 141-673 |
| Cow position: | chr10:39040828-39040294 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-674 |
| Cow position: | chr10:16926005-16926543 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-674 |
| Cow position: | chr10:38545440-38544904 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 141-679 |
| Cow position: | chr10:2120539-2119993 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 141-679 |
| Cow position: | chr10:14335373-14334829 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr10:22101707-22102257 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-679 |
| Cow position: | chr10:29846177-29845628 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 141-679 |
| Cow position: | chr10:30685040-30684493 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr10:38344886-38344340 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr10:40151779-40151226 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 84 |
| Conread position: | 141-679 |
| Cow position: | chr10:57989519-57988977 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr10:62408376-62407824 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 142-316 |
| Cow position: | chr10:17432783-17432614 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 142-420 |
| Cow position: | chr10:3542756-3542482 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 142-664 |
| Cow position: | chr10:39180252-39180794 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 142-674 |
| Cow position: | chr10:38538030-38537486 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 91 |
| Conread position: | 142-679 |
| Cow position: | chr10:7281621-7281071 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 142-679 |
| Cow position: | chr10:8290450-8290998 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 142-680 |
| Cow position: | chr10:21487389-21487938 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 151-532 |
| Cow position: | chr10:19715089-19714705 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 154-602 |
| Cow position: | chr10:19544886-19544444 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 155-679 |
| Cow position: | chr10:124872-125412 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 156-679 |
| Cow position: | chr10:24977279-24976749 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 75 |
| Conread position: | 158-664 |
| Cow position: | chr10:53246912-53246405 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 346, 57 |
| Conread position: | 164-679 |
| Cow position: | chr10:60314222-60314738 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 157 |
| Conread position: | 165-679 |
| Cow position: | chr10:42749342-42749848 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 184-657 |
| Cow position: | chr10:33347857-33348344 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 49 |
| Conread position: | 245-601 |
| Cow position: | chr10:29632195-29631838 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 151 |
| Conread position: | 289-660 |
| Cow position: | chr10:34285873-34286258 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 107 |
| Conread position: | 333-679 |
| Cow position: | chr10:13220745-13220408 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 142, 47 |
| Conread position: | 337-667 |
| Cow position: | chr10:28929286-28928954 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 391-679 |
| Cow position: | chr10:1378222-1378526 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 404-664 |
| Cow position: | chr10:7274500-7274776 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 436-674 |
| Cow position: | chr10:32701491-32701740 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 88 |
| Conread position: | 456-664 |
| Cow position: | chr10:44708834-44708611 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.