Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 1-679 |
| Cow position: | chr11:29668640-29667950 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 71 |
| Conread position: | 13-530 |
| Cow position: | chr11:19064253-19063756 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 13-660 |
| Cow position: | chr11:9734667-9734041 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 14-664 |
| Cow position: | chr11:52419385-52420033 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 109 |
| Conread position: | 21-679 |
| Cow position: | chr11:21443326-21443937 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 25-600 |
| Cow position: | chr11:15898932-15898394 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 61 |
| Conread position: | 64-679 |
| Cow position: | chr11:36762810-36763408 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 136-664 |
| Cow position: | chr11:1495983-1495446 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 136-680 |
| Cow position: | chr11:76374110-76373561 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 141-296 |
| Cow position: | chr11:47760586-47760429 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 84 |
| Conread position: | 141-334 |
| Cow position: | chr11:4270748-4270556 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-507 |
| Cow position: | chr11:45111729-45112087 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 141-600 |
| Cow position: | chr11:14729020-14728565 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 61 |
| Conread position: | 141-664 |
| Cow position: | chr11:15983731-15984268 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 141-664 |
| Cow position: | chr11:17107580-17107043 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 141-664 |
| Cow position: | chr11:28108256-28108779 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr11:63655231-63654695 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-664 |
| Cow position: | chr11:64081977-64081440 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr11:67846465-67845927 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 141-668 |
| Cow position: | chr11:10090789-10091325 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 141-668 |
| Cow position: | chr11:12093668-12094212 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 141-668 |
| Cow position: | chr11:31926281-31926816 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-672 |
| Cow position: | chr11:28229651-28229106 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-672 |
| Cow position: | chr11:73477414-73477959 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-674 |
| Cow position: | chr11:24393432-24393968 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 141-674 |
| Cow position: | chr11:71329701-71330242 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-677 |
| Cow position: | chr11:42432256-42432789 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 141-678 |
| Cow position: | chr11:11988220-11988768 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr11:12358311-12357758 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-679 |
| Cow position: | chr11:19102373-19101838 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr11:28054503-28053954 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr11:38835318-38834778 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 141-679 |
| Cow position: | chr11:43514523-43513975 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 141-679 |
| Cow position: | chr11:44157140-44156590 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-679 |
| Cow position: | chr11:44251903-44252453 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 141-679 |
| Cow position: | chr11:53431953-53431401 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr11:58134500-58135051 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr11:85393698-85393157 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 142-344 |
| Cow position: | chr11:8245420-8245624 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 142-601 |
| Cow position: | chr11:66727485-66727942 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 52 |
| Conread position: | 142-633 |
| Cow position: | chr11:31874661-31874176 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 142-664 |
| Cow position: | chr11:67450603-67451136 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 142-679 |
| Cow position: | chr11:26124816-26124269 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 142-679 |
| Cow position: | chr11:41170581-41170038 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 143-679 |
| Cow position: | chr11:50027740-50027219 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 9 |
| Conread position: | 151-319 |
| Cow position: | chr11:4057131-4057301 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 41, 73 |
| Conread position: | 151-679 |
| Cow position: | chr11:23877424-23877952 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 153-680 |
| Cow position: | chr11:81322826-81322307 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 351 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 154-679 |
| Cow position: | chr11:4027442-4026903 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 154-679 |
| Cow position: | chr11:10847566-10848108 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 155-570 |
| Cow position: | chr11:44492152-44491735 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 158-600 |
| Cow position: | chr11:16986204-16985754 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 256-601 |
| Cow position: | chr11:27670106-27669762 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 192, 7 |
| Conread position: | 270-663 |
| Cow position: | chr11:26564836-26564444 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 272-679 |
| Cow position: | chr11:47760043-47759626 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 17 |
| Conread position: | 274-679 |
| Cow position: | chr11:26070806-26070400 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 77 |
| Conread position: | 284-668 |
| Cow position: | chr11:20510647-20511041 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 305-668 |
| Cow position: | chr11:71982254-71981881 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 91 |
| Conread position: | 398-581 |
| Cow position: | chr11:21930884-21930694 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 403-672 |
| Cow position: | chr11:4057111-4056826 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 446-679 |
| Cow position: | chr11:28391053-28391299 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 449-667 |
| Cow position: | chr11:9601920-9601687 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.