Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 1-679 |
| Cow position: | chr13:31612279-31611581 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 416 |
| Conread position: | 126-679 |
| Cow position: | chr13:15520351-15519781 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 107 |
| Conread position: | 136-385 |
| Cow position: | chr13:33336254-33336008 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 95 |
| Conread position: | 136-663 |
| Cow position: | chr13:50109623-50110161 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 136-679 |
| Cow position: | chr13:20541868-20541320 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 190 |
| Conread position: | 138-668 |
| Cow position: | chr13:34325388-34324845 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 93 |
| Conread position: | 141-308 |
| Cow position: | chr13:34910986-34910820 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-390 |
| Cow position: | chr13:4941260-4941509 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-429 |
| Cow position: | chr13:9044679-9044965 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-432 |
| Cow position: | chr13:5625901-5625610 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 141-438 |
| Cow position: | chr13:13324921-13325207 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-455 |
| Cow position: | chr13:34868921-34869232 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 141-464 |
| Cow position: | chr13:34042190-34041873 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-600 |
| Cow position: | chr13:23003130-23002669 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 141-664 |
| Cow position: | chr13:30244506-30243970 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 141-664 |
| Cow position: | chr13:34937666-34938175 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 54 |
| Conread position: | 141-664 |
| Cow position: | chr13:47229829-47229294 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 141-664 |
| Cow position: | chr13:60466508-60467037 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-669 |
| Cow position: | chr13:43982904-43982383 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-672 |
| Cow position: | chr13:2388646-2388096 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-672 |
| Cow position: | chr13:30238424-30238955 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 141-675 |
| Cow position: | chr13:57023879-57024420 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 141-679 |
| Cow position: | chr13:1592978-1592429 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr13:3654142-3653594 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr13:13900044-13900594 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-679 |
| Cow position: | chr13:15924205-15923654 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr13:32545555-32546106 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-679 |
| Cow position: | chr13:32737648-32737098 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 142-564 |
| Cow position: | chr13:35757419-35757848 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 142-679 |
| Cow position: | chr13:4483975-4484519 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 151-664 |
| Cow position: | chr13:32985166-32984640 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 151-664 |
| Cow position: | chr13:49973864-49974387 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 154-668 |
| Cow position: | chr13:15450923-15450411 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 154-679 |
| Cow position: | chr13:30303465-30304009 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 160-602 |
| Cow position: | chr13:31556524-31556090 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 251-668 |
| Cow position: | chr13:16255093-16254669 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 119 |
| Conread position: | 251-679 |
| Cow position: | chr13:20062989-20062573 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 278-675 |
| Cow position: | chr13:30277936-30278339 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 161, 51 |
| Conread position: | 291-679 |
| Cow position: | chr13:34029739-34030136 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 60 |
| Conread position: | 313-668 |
| Cow position: | chr13:34910533-34910151 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 54, 82 |
| Conread position: | 325-602 |
| Cow position: | chr13:60700299-60700027 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 121, 33 |
| Conread position: | 394-679 |
| Cow position: | chr13:33335885-33335590 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 54, 168 |
| Conread position: | 399-679 |
| Cow position: | chr13:14178404-14178112 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 416-672 |
| Cow position: | chr13:34765999-34765735 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 417-664 |
| Cow position: | chr13:34424209-34424472 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 422-679 |
| Cow position: | chr13:9045238-9045494 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 426-664 |
| Cow position: | chr13:677476-677727 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 448-664 |
| Cow position: | chr13:52646396-52646165 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 456-679 |
| Cow position: | chr13:34041846-34041608 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 461-679 |
| Cow position: | chr13:31730381-31730149 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 50, 14 |
Show alignments to all cow chromosomes.