Cow genome map

Conread name: Emb1-C0005191_I18

Conread position: 1-323
Cow position: chr15:32480953-32480647 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 85, 26

Conread position: 1-601
Cow position: chr15:328360-328926 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 96

Conread position: 1-673
Cow position: chr15:6156020-6155347 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 87

Conread position: 1-680
Cow position: chr15:6553923-6553224 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 240

Conread position: 2-664
Cow position: chr15:56415-57072 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 83

Conread position: 5-371
Cow position: chr15:24794299-24794639 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 259
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 81, 38

Conread position: 5-396
Cow position: chr15:17292376-17292753 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 116

Conread position: 17-674
Cow position: chr15:36626345-36625674 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 104

Conread position: 45-679
Cow position: chr15:5980334-5980950 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 76

Conread position: 48-670
Cow position: chr15:32693538-32694157 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 35

Conread position: 126-668
Cow position: chr15:8099515-8100061 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 107

Conread position: 133-644
Cow position: chr15:9429983-9430507 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 99

Conread position: 135-664
Cow position: chr15:17080163-17079623 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 99

Conread position: 136-485
Cow position: chr15:32673503-32673166 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 9

Conread position: 136-602
Cow position: chr15:30811047-30811490 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 19

Conread position: 136-664
Cow position: chr15:3009811-3009266 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 98

Conread position: 139-679
Cow position: chr15:13674577-13675104 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 16

Conread position: 140-679
Cow position: chr15:444656-445207 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 14

Conread position: 141-280
Cow position: chr15:17218351-17218210 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 92

Conread position: 141-287
Cow position: chr15:42320371-42320226 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 59, 13

Conread position: 141-300
Cow position: chr15:51216644-51216800 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 51, 11

Conread position: 141-348
Cow position: chr15:7260685-7260882 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 13

Conread position: 141-390
Cow position: chr15:4385323-4385565 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 11, 0

Conread position: 141-390
Cow position: chr15:12421109-12420861 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 11

Conread position: 141-396
Cow position: chr15:35753541-35753282 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-471
Cow position: chr15:42936764-42937092 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-602
Cow position: chr15:36970974-36971433 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-663
Cow position: chr15:4671486-4672020 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 92

Conread position: 141-664
Cow position: chr15:1519100-1518567 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chr15:1772548-1773085 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chr15:3888925-3889465 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 89

Conread position: 141-664
Cow position: chr15:18267937-18267400 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-679
Cow position: chr15:315804-315257 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr15:524805-524257 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr15:2076703-2077260 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 7

Conread position: 141-679
Cow position: chr15:3261278-3260716 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 141-679
Cow position: chr15:4922206-4922751 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 141-679
Cow position: chr15:6471869-6471328 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-679
Cow position: chr15:7837300-7837852 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr15:7934381-7934931 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 11

Conread position: 141-679
Cow position: chr15:8750478-8751004 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 11

Conread position: 141-679
Cow position: chr15:10888667-10889216 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 141-679
Cow position: chr15:15347064-15346512 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-679
Cow position: chr15:18332773-18332227 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr15:19737997-19737447 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr15:32494331-32493785 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr15:32720687-32720143 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 83

Conread position: 142-669
Cow position: chr15:24295149-24295690 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 92

Conread position: 142-669
Cow position: chr15:31358941-31359469 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 83

Conread position: 142-679
Cow position: chr15:1237737-1238280 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 53

Conread position: 142-679
Cow position: chr15:4651418-4651954 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 30

Conread position: 142-679
Cow position: chr15:14582301-14581758 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 89

Conread position: 142-679
Cow position: chr15:18576769-18577313 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 21

Conread position: 142-679
Cow position: chr15:21665691-21665144 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 83

Conread position: 143-344
Cow position: chr15:4765263-4765464 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 48, 9

Conread position: 146-668
Cow position: chr15:7544940-7545454 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 34

Conread position: 151-679
Cow position: chr15:28490085-28489546 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 74

Conread position: 151-679
Cow position: chr15:35647603-35647066 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 81

Conread position: 151-679
Cow position: chr15:44828858-44829403 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 74

Conread position: 151-679
Cow position: chr15:53137158-53136618 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 31

Conread position: 156-591
Cow position: chr15:1764158-1764592 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 70

Conread position: 156-601
Cow position: chr15:7894167-7893725 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 9

Conread position: 156-668
Cow position: chr15:4812671-4813190 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 68

Conread position: 156-672
Cow position: chr15:4961710-4962229 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 67

Conread position: 156-679
Cow position: chr15:44069989-44070530 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 78

Conread position: 158-601
Cow position: chr15:24717162-24717602 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 12

Conread position: 159-601
Cow position: chr15:37392562-37393008 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 65

Conread position: 159-680
Cow position: chr15:4685669-4686201 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 19

Conread position: 163-667
Cow position: chr15:2762755-2763256 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 346
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 29, 70

Conread position: 167-602
Cow position: chr15:6078827-6079269 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 66

Conread position: 196-679
Cow position: chr15:1782329-1782825 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 32

Conread position: 219-670
Cow position: chr15:1667840-1668318 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 11

Conread position: 223-601
Cow position: chr15:31862421-31862047 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 144

Conread position: 223-671
Cow position: chr15:47772281-47772741 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 298
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 38

Conread position: 247-679
Cow position: chr15:17218103-17217657 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 117

Conread position: 270-679
Cow position: chr15:9003940-9003520 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 126

Conread position: 273-602
Cow position: chr15:2589317-2588973 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 213
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 15, 86

Conread position: 276-679
Cow position: chr15:8811833-8811422 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 120

Conread position: 279-669
Cow position: chr15:6592436-6592026 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 113

Conread position: 322-602
Cow position: chr15:7260834-7261113 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 122, 17

Conread position: 322-679
Cow position: chr15:9912920-9913295 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 265
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 125, 66

Conread position: 387-679
Cow position: chr15:2214605-2214292 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 221
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 59, 297

Conread position: 391-679
Cow position: chr15:4386058-4386362 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 56, 0

Conread position: 403-679
Cow position: chr15:35753005-35752716 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 44, 66

Conread position: 407-679
Cow position: chr15:51217918-51218206 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 40, 0

Conread position: 413-679
Cow position: chr15:2016890-2017171 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 33, 43

Conread position: 421-679
Cow position: chr15:1300476-1300204 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 90

Conread position: 423-679
Cow position: chr15:36668069-36668349 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 189
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 86, 0

Conread position: 430-679
Cow position: chr15:6368617-6368356 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 20

Show alignments to all cow chromosomes.