Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 1-679 |
| Cow position: | chr16:14666242-14665551 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 58 |
| Conread position: | 1-679 |
| Cow position: | chr16:27734205-27733539 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 120 |
| Conread position: | 3-675 |
| Cow position: | chr16:28437805-28437136 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 60 |
| Conread position: | 5-679 |
| Cow position: | chr16:1431748-1432444 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 234 |
| Conread position: | 10-390 |
| Cow position: | chr16:49235235-49234874 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 25-390 |
| Cow position: | chr16:16271986-16271655 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 261 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 29-390 |
| Cow position: | chr16:49470799-49471163 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 76, 115 |
| Conread position: | 127-669 |
| Cow position: | chr16:49256498-49255972 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 37 |
| Conread position: | 141-428 |
| Cow position: | chr16:23252797-23252516 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 141-485 |
| Cow position: | chr16:24105412-24105753 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-600 |
| Cow position: | chr16:836754-837220 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-654 |
| Cow position: | chr16:25257645-25258180 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 141-664 |
| Cow position: | chr16:4302630-4302097 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-664 |
| Cow position: | chr16:10375876-10375356 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 13 |
| Conread position: | 141-668 |
| Cow position: | chr16:18498609-18498040 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-673 |
| Cow position: | chr16:2411259-2410713 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-674 |
| Cow position: | chr16:29046731-29047278 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr16:1567745-1567194 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 141-679 |
| Cow position: | chr16:2483432-2482880 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-679 |
| Cow position: | chr16:2727579-2727029 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr16:4479275-4478724 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 141-679 |
| Cow position: | chr16:12538217-12537668 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr16:23983019-23983556 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr16:26663460-26664009 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr16:29090569-29090032 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 141-679 |
| Cow position: | chr16:31592205-31591660 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr16:43897562-43897017 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 142-429 |
| Cow position: | chr16:15492936-15493221 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 142-429 |
| Cow position: | chr16:15566448-15566735 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 142-663 |
| Cow position: | chr16:10203731-10203209 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 142-664 |
| Cow position: | chr16:32440-32949 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 142-664 |
| Cow position: | chr16:34530029-34530557 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 91 |
| Conread position: | 142-664 |
| Cow position: | chr16:41163358-41162828 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 142-666 |
| Cow position: | chr16:28197972-28197431 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 257 |
| Conread position: | 142-674 |
| Cow position: | chr16:15476550-15477095 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 142-678 |
| Cow position: | chr16:40296470-40295918 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 142-679 |
| Cow position: | chr16:407324-406780 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 142-679 |
| Cow position: | chr16:8816398-8815847 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 142-679 |
| Cow position: | chr16:25341674-25342228 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 142-679 |
| Cow position: | chr16:25441332-25441887 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 142-679 |
| Cow position: | chr16:25457757-25457203 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 89 |
| Conread position: | 142-679 |
| Cow position: | chr16:28471395-28470842 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 142-679 |
| Cow position: | chr16:29033749-29034307 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 151-384 |
| Cow position: | chr16:5484036-5484269 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 151-644 |
| Cow position: | chr16:23808138-23808657 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 151-679 |
| Cow position: | chr16:30049213-30049747 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 154-679 |
| Cow position: | chr16:10437961-10438511 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 71 |
| Conread position: | 156-507 |
| Cow position: | chr16:15237466-15237789 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 67 |
| Conread position: | 156-635 |
| Cow position: | chr16:47564127-47564578 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 41 |
| Conread position: | 169-655 |
| Cow position: | chr16:17057512-17057025 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 63 |
| Conread position: | 170-679 |
| Cow position: | chr16:37456290-37455761 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 186-668 |
| Cow position: | chr16:25085382-25085864 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 35 |
| Conread position: | 285-679 |
| Cow position: | chr16:23536035-23535632 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 24 |
| Conread position: | 334-679 |
| Cow position: | chr16:2238803-2238455 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 385-668 |
| Cow position: | chr16:16271188-16270892 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 391-679 |
| Cow position: | chr16:5484691-5484990 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 56, 78 |
| Conread position: | 391-679 |
| Cow position: | chr16:15185031-15185331 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 120, 43 |
| Conread position: | 412-664 |
| Cow position: | chr16:42736416-42736157 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 36, 77 |
| Conread position: | 416-664 |
| Cow position: | chr16:46707386-46707122 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 418-679 |
| Cow position: | chr16:7676470-7676198 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 421-679 |
| Cow position: | chr16:39367396-39367119 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 422-600 |
| Cow position: | chr16:15567021-15567206 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 427-674 |
| Cow position: | chr16:15493494-15493757 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 428-679 |
| Cow position: | chr16:23252442-23252176 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 251 |
| Conread position: | 443-669 |
| Cow position: | chr16:20201926-20202165 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 7 |
Show alignments to all cow chromosomes.