Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 5-664 |
| Cow position: | chr17:228146-227496 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 90 |
| Conread position: | 17-672 |
| Cow position: | chr17:15143193-15142534 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 86 |
| Conread position: | 135-679 |
| Cow position: | chr17:1880365-1880928 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 136-332 |
| Cow position: | chr17:2174158-2174350 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 136-579 |
| Cow position: | chr17:3708505-3708067 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 136-664 |
| Cow position: | chr17:24782442-24782973 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 136-679 |
| Cow position: | chr17:16857248-16856687 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 98 |
| Conread position: | 140-602 |
| Cow position: | chr17:22132513-22132971 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 91 |
| Conread position: | 141-288 |
| Cow position: | chr17:19269081-19268934 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-390 |
| Cow position: | chr17:20183710-20183949 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-395 |
| Cow position: | chr17:15850684-15850938 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 141-660 |
| Cow position: | chr17:14216746-14216223 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 21 |
| Conread position: | 141-663 |
| Cow position: | chr17:20087461-20086937 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 141-664 |
| Cow position: | chr17:2262383-2262921 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr17:23324174-23323637 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-668 |
| Cow position: | chr17:250444-250982 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 141-671 |
| Cow position: | chr17:5226903-5227436 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-672 |
| Cow position: | chr17:6119988-6120536 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-672 |
| Cow position: | chr17:15436071-15436616 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 141-679 |
| Cow position: | chr17:2579901-2580449 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 141-679 |
| Cow position: | chr17:6068841-6069385 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr17:6260129-6260688 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr17:11087438-11086891 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 141-679 |
| Cow position: | chr17:18103400-18102859 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr17:19019857-19020403 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 142-281 |
| Cow position: | chr17:43952284-43952143 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 83 |
| Conread position: | 142-664 |
| Cow position: | chr17:14894439-14894977 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 142-664 |
| Cow position: | chr17:34156407-34156934 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 142-668 |
| Cow position: | chr17:4060384-4060916 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 142-679 |
| Cow position: | chr17:3642551-3642004 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 142-679 |
| Cow position: | chr17:24029714-24029173 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 55 |
| Conread position: | 143-679 |
| Cow position: | chr17:38873902-38874459 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 359 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 151-679 |
| Cow position: | chr17:1657554-1657018 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 84 |
| Conread position: | 151-679 |
| Cow position: | chr17:40805112-40805640 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 81 |
| Conread position: | 154-679 |
| Cow position: | chr17:15324119-15324660 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 156-679 |
| Cow position: | chr17:14040736-14040209 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 79 |
| Conread position: | 191-674 |
| Cow position: | chr17:4603806-4604273 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 227, 30 |
| Conread position: | 201-664 |
| Cow position: | chr17:2247727-2247253 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 27 |
| Conread position: | 223-602 |
| Cow position: | chr17:28018772-28019133 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 78 |
| Conread position: | 236-602 |
| Cow position: | chr17:11783222-11783588 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 140 |
| Conread position: | 246-672 |
| Cow position: | chr17:24573042-24573463 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 156, 56 |
| Conread position: | 255-602 |
| Cow position: | chr17:181694-182044 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 69 |
| Conread position: | 277-679 |
| Cow position: | chr17:19268415-19267998 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 119 |
| Conread position: | 283-601 |
| Cow position: | chr17:20081435-20081122 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 167, 84 |
| Conread position: | 313-585 |
| Cow position: | chr17:15371412-15371693 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 166, 83 |
| Conread position: | 313-664 |
| Cow position: | chr17:20100022-20099661 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 134, 44 |
| Conread position: | 337-679 |
| Cow position: | chr17:4942254-4941899 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 113, 60 |
| Conread position: | 391-679 |
| Cow position: | chr17:15851219-15851520 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 422-603 |
| Cow position: | chr17:2030679-2030868 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 443-679 |
| Cow position: | chr17:11025937-11025686 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 44, 71 |
Show alignments to all cow chromosomes.