Cow genome map

Conread name: Emb1-C0005191_I18

Conread position: 1-286
Cow position: chr2:81256623-81256893 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 85, 120

Conread position: 1-679
Cow position: chr2:12224495-12223827 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 54

Conread position: 5-669
Cow position: chr2:5485154-5484518 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 62

Conread position: 36-679
Cow position: chr2:38373264-38373870 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 48

Conread position: 45-674
Cow position: chr2:3835112-3834481 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 72

Conread position: 67-679
Cow position: chr2:66308245-66307623 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 75

Conread position: 129-600
Cow position: chr2:50323134-50323587 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 20

Conread position: 134-679
Cow position: chr2:11729793-11730313 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 91

Conread position: 141-316
Cow position: chr2:44091235-44091410 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 53, 13

Conread position: 141-429
Cow position: chr2:42671052-42670769 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 11

Conread position: 141-595
Cow position: chr2:28620090-28619638 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 141-601
Cow position: chr2:14777886-14777443 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 91

Conread position: 141-662
Cow position: chr2:41172605-41173136 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 141-664
Cow position: chr2:2412862-2412326 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chr2:14823056-14823563 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 22

Conread position: 141-664
Cow position: chr2:57335130-57335667 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chr2:59413747-59413214 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-668
Cow position: chr2:31297731-31298258 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 141-674
Cow position: chr2:36980315-36980861 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr2:282752-282204 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr2:8118477-8119027 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr2:10186294-10185740 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 141-679
Cow position: chr2:10268719-10268172 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr2:10732830-10732287 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 141-679
Cow position: chr2:11159186-11158633 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr2:16900190-16900738 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr2:19011281-19011831 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr2:41657117-41657661 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 11

Conread position: 141-679
Cow position: chr2:65938511-65937967 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr2:80293013-80292475 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-680
Cow position: chr2:22077718-22078269 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 20

Conread position: 142-354
Cow position: chr2:39421512-39421725 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 52, 80

Conread position: 142-664
Cow position: chr2:9907846-9908384 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 83

Conread position: 142-668
Cow position: chr2:49604873-49605417 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 91

Conread position: 142-672
Cow position: chr2:47038479-47037943 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 12

Conread position: 142-679
Cow position: chr2:13045766-13045228 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 83

Conread position: 142-679
Cow position: chr2:28793192-28793736 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 82

Conread position: 142-679
Cow position: chr2:44991357-44990818 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 94

Conread position: 142-679
Cow position: chr2:53329694-53330247 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 91

Conread position: 148-390
Cow position: chr2:28650288-28650043 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 77

Conread position: 148-679
Cow position: chr2:32066139-32065595 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 84

Conread position: 151-503
Cow position: chr2:53498406-53498059 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 214, 38

Conread position: 151-669
Cow position: chr2:24146807-24147341 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 81

Conread position: 151-680
Cow position: chr2:81751164-81750632 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 360
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 41, 28

Conread position: 152-679
Cow position: chr2:34051121-34051653 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 50

Conread position: 156-278
Cow position: chr2:50983276-50983152 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 36, 69

Conread position: 156-668
Cow position: chr2:7902968-7903512 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 154

Conread position: 157-679
Cow position: chr2:50077552-50078085 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 75

Conread position: 157-679
Cow position: chr2:74857183-74857707 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 14

Conread position: 158-677
Cow position: chr2:69139883-69140414 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 341
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 37, 11

Conread position: 159-679
Cow position: chr2:36053044-36052523 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 72

Conread position: 186-663
Cow position: chr2:1690955-1691445 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 47

Conread position: 195-664
Cow position: chr2:41150615-41151073 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 35

Conread position: 195-679
Cow position: chr2:15576843-15576356 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 33

Conread position: 204-667
Cow position: chr2:47810845-47811318 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 107

Conread position: 212-602
Cow position: chr2:767442-767080 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 269
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 330, 43

Conread position: 213-668
Cow position: chr2:51617270-51617723 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 17

Conread position: 223-679
Cow position: chr2:365043-364573 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 173

Conread position: 225-602
Cow position: chr2:573616-573973 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 219, 82

Conread position: 250-674
Cow position: chr2:12480023-12479593 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 9

Conread position: 267-675
Cow position: chr2:1113307-1113721 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 58

Conread position: 290-679
Cow position: chr2:43960792-43961179 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 288
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 157, 12

Conread position: 298-679
Cow position: chr2:6961618-6962002 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 70

Conread position: 326-601
Cow position: chr2:32655788-32656068 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 125, 67

Conread position: 330-679
Cow position: chr2:5862590-5862222 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 252
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 37, 19

Conread position: 337-679
Cow position: chr2:1109783-1109440 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 234
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 108, 65

Conread position: 381-679
Cow position: chr2:52062717-52063030 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 193
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 67, 55

Conread position: 385-679
Cow position: chr2:50983117-50982813 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 61, 77

Conread position: 391-679
Cow position: chr2:28649416-28649113 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 56, 165

Conread position: 400-664
Cow position: chr2:2356250-2355970 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 403-667
Cow position: chr2:78762847-78763125 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 44, 98

Conread position: 403-679
Cow position: chr2:24924756-24925048 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 44, 0

Conread position: 420-665
Cow position: chr2:20902139-20901874 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 422-679
Cow position: chr2:42670493-42670220 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 192
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 433-668
Cow position: chr2:45964893-45964642 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 436-668
Cow position: chr2:5904092-5903844 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 469-679
Cow position: chr2:81257434-81257657 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 42, 0

Show alignments to all cow chromosomes.