Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 1-674 |
| Cow position: | chr20:8215840-8216512 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 1-679 |
| Cow position: | chr20:28565262-28564586 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 27 |
| Conread position: | 5-296 |
| Cow position: | chr20:3271041-3271309 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 81, 11 |
| Conread position: | 140-655 |
| Cow position: | chr20:18324722-18324209 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 141-287 |
| Cow position: | chr20:7115031-7114885 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-390 |
| Cow position: | chr20:8003773-8003524 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 141-390 |
| Cow position: | chr20:25850536-25850292 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-422 |
| Cow position: | chr20:28161224-28161506 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-454 |
| Cow position: | chr20:12438305-12437996 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-601 |
| Cow position: | chr20:22697723-22698179 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 141-664 |
| Cow position: | chr20:823216-823747 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 141-664 |
| Cow position: | chr20:19438388-19438904 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 13 |
| Conread position: | 141-665 |
| Cow position: | chr20:30684776-30685308 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr20:5535391-5535938 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr20:12568974-12569524 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr20:13763360-13763908 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 141-679 |
| Cow position: | chr20:15292460-15293006 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr20:20391135-20390611 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 141-679 |
| Cow position: | chr20:23799341-23799887 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 141-679 |
| Cow position: | chr20:35124951-35125497 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 142-674 |
| Cow position: | chr20:15097422-15096882 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 142-674 |
| Cow position: | chr20:27869653-27870202 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 142-674 |
| Cow position: | chr20:42905660-42906196 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 81 |
| Conread position: | 142-679 |
| Cow position: | chr20:21914782-21915322 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 142-679 |
| Cow position: | chr20:23469211-23468659 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 149-665 |
| Cow position: | chr20:14870488-14869960 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 151-664 |
| Cow position: | chr20:8974353-8973830 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 74 |
| Conread position: | 151-679 |
| Cow position: | chr20:29948963-29949507 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 81 |
| Conread position: | 156-651 |
| Cow position: | chr20:13679573-13679073 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 157-678 |
| Cow position: | chr20:10840242-10839716 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 164-601 |
| Cow position: | chr20:10854870-10854442 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 168-601 |
| Cow position: | chr20:18314842-18314432 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 63 |
| Conread position: | 191-663 |
| Cow position: | chr20:13434084-13433612 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 201-601 |
| Cow position: | chr20:19355294-19355680 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 201-668 |
| Cow position: | chr20:24616344-24615876 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 27 |
| Conread position: | 207-679 |
| Cow position: | chr20:17661557-17661070 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 22 |
| Conread position: | 278-662 |
| Cow position: | chr20:37442716-37442310 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 118 |
| Conread position: | 291-668 |
| Cow position: | chr20:7113586-7113199 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 105 |
| Conread position: | 333-679 |
| Cow position: | chr20:28161459-28161823 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 355-679 |
| Cow position: | chr20:21394599-21394931 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 90, 43 |
| Conread position: | 378-679 |
| Cow position: | chr20:31498403-31498093 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 385-668 |
| Cow position: | chr20:10102002-10101713 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 62, 89 |
| Conread position: | 390-668 |
| Cow position: | chr20:15066183-15066470 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 54, 198 |
| Conread position: | 391-640 |
| Cow position: | chr20:25850128-25849863 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 403-672 |
| Cow position: | chr20:16105827-16105543 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 433-604 |
| Cow position: | chr20:27897518-27897340 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 455-674 |
| Cow position: | chr20:12437942-12437711 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.