Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 5-679 |
| Cow position: | chr21:5017544-5018228 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 506, 524 |
| Conread position: | 29-263 |
| Cow position: | chr21:20744031-20743816 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 45-679 |
| Cow position: | chr21:37148528-37149153 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 138-663 |
| Cow position: | chr21:47941419-47941960 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 138-668 |
| Cow position: | chr21:39087571-39088109 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 140-344 |
| Cow position: | chr21:21518088-21518292 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 50, 84 |
| Conread position: | 141-390 |
| Cow position: | chr21:27070693-27070444 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-390 |
| Cow position: | chr21:27282961-27283209 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-466 |
| Cow position: | chr21:30562377-30562694 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-589 |
| Cow position: | chr21:28735804-28736270 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-600 |
| Cow position: | chr21:30599353-30598891 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-602 |
| Cow position: | chr21:47949633-47950093 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 141-664 |
| Cow position: | chr21:10850651-10851182 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-664 |
| Cow position: | chr21:11506164-11506699 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 141-664 |
| Cow position: | chr21:37371813-37372340 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 141-679 |
| Cow position: | chr21:146497-147047 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-679 |
| Cow position: | chr21:1192326-1192875 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr21:10567243-10567788 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-679 |
| Cow position: | chr21:35144331-35144875 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr21:40271106-40270557 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 142-390 |
| Cow position: | chr21:2511462-2511712 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 83 |
| Conread position: | 142-679 |
| Cow position: | chr21:2883174-2882620 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 91 |
| Conread position: | 142-679 |
| Cow position: | chr21:3779342-3779885 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 151-377 |
| Cow position: | chr21:33252088-33252310 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 151-394 |
| Cow position: | chr21:359944-360175 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 39, 72 |
| Conread position: | 151-429 |
| Cow position: | chr21:31559077-31558804 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 151-679 |
| Cow position: | chr21:48116683-48117216 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 154-674 |
| Cow position: | chr21:1287641-1287105 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 156-672 |
| Cow position: | chr21:13313353-13313867 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 137 |
| Conread position: | 156-674 |
| Cow position: | chr21:2416795-2417329 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 76 |
| Conread position: | 161-672 |
| Cow position: | chr21:18817964-18817441 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 34 |
| Conread position: | 166-657 |
| Cow position: | chr21:4077425-4077929 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 67 |
| Conread position: | 202-679 |
| Cow position: | chr21:25782271-25782753 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 26 |
| Conread position: | 229-664 |
| Cow position: | chr21:4184558-4185007 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 167 |
| Conread position: | 234-679 |
| Cow position: | chr21:5840605-5840146 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 162 |
| Conread position: | 235-672 |
| Cow position: | chr21:5015631-5015197 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 72 |
| Conread position: | 270-679 |
| Cow position: | chr21:21944067-21943646 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 126 |
| Conread position: | 271-675 |
| Cow position: | chr21:445822-446228 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 125 |
| Conread position: | 303-601 |
| Cow position: | chr21:28256159-28256464 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 12 |
| Conread position: | 310-673 |
| Cow position: | chr21:37719280-37718908 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 334-644 |
| Cow position: | chr21:21519399-21519712 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 62 |
| Conread position: | 337-601 |
| Cow position: | chr21:26743416-26743157 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 174, 30 |
| Conread position: | 360-679 |
| Cow position: | chr21:49295390-49295725 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 389-674 |
| Cow position: | chr21:1689346-1689048 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 391-679 |
| Cow position: | chr21:26402674-26402370 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 391-679 |
| Cow position: | chr21:27070153-27069850 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 204 |
| Conread position: | 393-679 |
| Cow position: | chr21:27566463-27566756 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 198 |
| Conread position: | 422-679 |
| Cow position: | chr21:31515480-31515210 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 25, 57 |
Show alignments to all cow chromosomes.