Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 1-674 |
| Cow position: | chr28:18520135-18519462 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 42 |
| Conread position: | 1-679 |
| Cow position: | chr28:5937800-5938477 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 120 |
| Conread position: | 1-679 |
| Cow position: | chr28:32792056-32791383 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 120 |
| Conread position: | 2-679 |
| Cow position: | chr28:5566470-5567147 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 118 |
| Conread position: | 29-346 |
| Cow position: | chr28:5801346-5801644 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 75 |
| Conread position: | 136-679 |
| Cow position: | chr28:1814431-1813871 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 97 |
| Conread position: | 141-284 |
| Cow position: | chr28:29820180-29820322 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 141-307 |
| Cow position: | chr28:10581539-10581372 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-336 |
| Cow position: | chr28:2084038-2084230 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 141-362 |
| Cow position: | chr28:3020304-3020083 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 141-373 |
| Cow position: | chr28:34594424-34594656 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 141-390 |
| Cow position: | chr28:782839-783086 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-445 |
| Cow position: | chr28:8379279-8379580 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-656 |
| Cow position: | chr28:2724483-2723954 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr28:5765204-5765719 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr28:6779897-6779361 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 141-668 |
| Cow position: | chr28:22232960-22232440 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-673 |
| Cow position: | chr28:17388929-17389468 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-673 |
| Cow position: | chr28:24589293-24589838 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-673 |
| Cow position: | chr28:24668054-24668598 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 368 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 141-674 |
| Cow position: | chr28:12409782-12409246 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr28:1167436-1166886 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr28:1386959-1386406 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 141-679 |
| Cow position: | chr28:1505311-1505859 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr28:5113852-5113304 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 141-679 |
| Cow position: | chr28:5751259-5750715 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 11 |
| Conread position: | 141-679 |
| Cow position: | chr28:7002435-7002988 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr28:10071728-10072267 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 141-679 |
| Cow position: | chr28:12150749-12151297 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 142-299 |
| Cow position: | chr28:8720853-8720694 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 15 |
| Conread position: | 142-679 |
| Cow position: | chr28:7740924-7741440 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 142-679 |
| Cow position: | chr28:17666853-17666314 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 151-423 |
| Cow position: | chr28:7822705-7822977 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 151-661 |
| Cow position: | chr28:7789499-7788976 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 74 |
| Conread position: | 151-679 |
| Cow position: | chr28:13460423-13460966 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 151-679 |
| Cow position: | chr28:22260697-22260159 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 153-507 |
| Cow position: | chr28:10497561-10497230 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 154-679 |
| Cow position: | chr28:26425794-26425263 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 156-657 |
| Cow position: | chr28:10646932-10646433 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 38 |
| Conread position: | 158-483 |
| Cow position: | chr28:26489762-26490083 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 161-679 |
| Cow position: | chr28:21359939-21360477 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 163-679 |
| Cow position: | chr28:3191790-3191263 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 169-679 |
| Cow position: | chr28:33252777-33253296 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 188-674 |
| Cow position: | chr28:14704898-14704400 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 263-679 |
| Cow position: | chr28:29820568-29820988 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 122 |
| Conread position: | 298-664 |
| Cow position: | chr28:3020115-3019740 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 313-668 |
| Cow position: | chr28:8720333-8719965 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 44 |
| Conread position: | 318-582 |
| Cow position: | chr28:11490881-11490620 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 128, 19 |
| Conread position: | 322-679 |
| Cow position: | chr28:15035472-15035124 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 126, 54 |
| Conread position: | 333-679 |
| Cow position: | chr28:5802664-5803031 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 391-599 |
| Cow position: | chr28:9420543-9420328 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 111 |
| Conread position: | 403-679 |
| Cow position: | chr28:783377-783665 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 416-672 |
| Cow position: | chr28:7823255-7823526 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 433-675 |
| Cow position: | chr28:8379787-8380044 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 14, 158 |
| Conread position: | 472-679 |
| Cow position: | chr28:10581318-10581098 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 522-679 |
| Cow position: | chr28:1217331-1217164 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.