Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 5-380 |
| Cow position: | chr29:42802419-42802776 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 99 |
| Conread position: | 140-664 |
| Cow position: | chr29:669655-669116 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 141-362 |
| Cow position: | chr29:16110820-16111043 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-400 |
| Cow position: | chr29:410114-409856 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-429 |
| Cow position: | chr29:32540220-32540501 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-435 |
| Cow position: | chr29:19622836-19622545 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-600 |
| Cow position: | chr29:16022942-16023408 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 84 |
| Conread position: | 141-602 |
| Cow position: | chr29:15894447-15893978 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 141-628 |
| Cow position: | chr29:48061-47549 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-660 |
| Cow position: | chr29:13582473-13583018 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 141-664 |
| Cow position: | chr29:18856538-18856008 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-664 |
| Cow position: | chr29:27249938-27249401 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-664 |
| Cow position: | chr29:31181810-31182346 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 141-664 |
| Cow position: | chr29:35297275-35297775 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 141-674 |
| Cow position: | chr29:2840965-2840425 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-674 |
| Cow position: | chr29:10647839-10647297 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:2100257-2100805 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:5958011-5958557 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:7430807-7430261 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:9619827-9620375 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 141-679 |
| Cow position: | chr29:9643348-9642804 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:10823557-10823026 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:14586327-14586878 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:25932131-25931583 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:26164411-26163872 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:35263106-35263637 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 141-679 |
| Cow position: | chr29:39079299-39078748 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:40502572-40502023 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr29:43322965-43323515 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 141-679 |
| Cow position: | chr29:45586956-45586418 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 142-664 |
| Cow position: | chr29:34925883-34926420 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 88 |
| Conread position: | 142-674 |
| Cow position: | chr29:15949141-15948571 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 142-679 |
| Cow position: | chr29:20251569-20252122 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 142-679 |
| Cow position: | chr29:38227392-38227935 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 151-664 |
| Cow position: | chr29:14085715-14085186 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 151-679 |
| Cow position: | chr29:2690320-2690869 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 151-679 |
| Cow position: | chr29:34799390-34798852 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 156-662 |
| Cow position: | chr29:21426605-21426087 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 75 |
| Conread position: | 156-672 |
| Cow position: | chr29:5982293-5981764 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 208-667 |
| Cow position: | chr29:16173854-16173397 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 20 |
| Conread position: | 250-668 |
| Cow position: | chr29:32891328-32891742 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 60 |
| Conread position: | 293-674 |
| Cow position: | chr29:6265717-6265322 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 103 |
| Conread position: | 299-679 |
| Cow position: | chr29:2949773-2949397 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 97 |
| Conread position: | 312-674 |
| Cow position: | chr29:8664101-8664463 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 72 |
| Conread position: | 345-664 |
| Cow position: | chr29:35815366-35815033 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 51 |
| Conread position: | 355-679 |
| Cow position: | chr29:14210948-14210611 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 41 |
| Conread position: | 355-679 |
| Cow position: | chr29:14216589-14216923 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 29 |
| Conread position: | 389-679 |
| Cow position: | chr29:41367034-41366732 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 394-599 |
| Cow position: | chr29:2748595-2748383 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 399-668 |
| Cow position: | chr29:32286863-32287142 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 77 |
| Conread position: | 403-674 |
| Cow position: | chr29:23976788-23977073 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 421-679 |
| Cow position: | chr29:32540778-32541051 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 424-679 |
| Cow position: | chr29:42803104-42803368 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 56 |
| Conread position: | 445-664 |
| Cow position: | chr29:31096673-31096439 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 452-674 |
| Cow position: | chr29:646515-646748 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 471-679 |
| Cow position: | chr29:19622547-19622326 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 52 |
Show alignments to all cow chromosomes.