Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 1-672 |
| Cow position: | chr3:42052942-42052292 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 1-678 |
| Cow position: | chr3:45895351-45894680 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 98 |
| Conread position: | 1-679 |
| Cow position: | chr3:23290133-23289462 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 10 |
| Conread position: | 1-679 |
| Cow position: | chr3:45974704-45975375 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 98 |
| Conread position: | 1-679 |
| Cow position: | chr3:46502740-46503418 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 13-660 |
| Cow position: | chr3:68873542-68872902 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 85 |
| Conread position: | 28-678 |
| Cow position: | chr3:42995455-42994801 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 35-576 |
| Cow position: | chr3:4737738-4737199 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 87 |
| Conread position: | 135-664 |
| Cow position: | chr3:19939191-19939750 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 136-655 |
| Cow position: | chr3:46347705-46347210 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 136-672 |
| Cow position: | chr3:48230143-48229615 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 136-679 |
| Cow position: | chr3:5953867-5953309 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 99 |
| Conread position: | 137-679 |
| Cow position: | chr3:19756634-19756076 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 87 |
| Conread position: | 140-679 |
| Cow position: | chr3:49544882-49544337 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 140-679 |
| Cow position: | chr3:75040841-75040288 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 141-261 |
| Cow position: | chr3:74439626-74439746 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-307 |
| Cow position: | chr3:36881591-36881423 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 51, 84 |
| Conread position: | 141-338 |
| Cow position: | chr3:60208282-60208086 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-444 |
| Cow position: | chr3:594906-595207 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-463 |
| Cow position: | chr3:4286121-4286442 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 141-506 |
| Cow position: | chr3:64027763-64027399 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 141-602 |
| Cow position: | chr3:19736903-19737369 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-635 |
| Cow position: | chr3:64017039-64016535 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-660 |
| Cow position: | chr3:46860980-46860448 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 141-662 |
| Cow position: | chr3:50915655-50916193 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-664 |
| Cow position: | chr3:2907442-2906913 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 141-664 |
| Cow position: | chr3:18859736-18860270 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr3:19878980-19879511 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-664 |
| Cow position: | chr3:29330948-29330424 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr3:42432561-42433076 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-664 |
| Cow position: | chr3:45033063-45033605 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-664 |
| Cow position: | chr3:66890640-66890106 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-668 |
| Cow position: | chr3:5883867-5884405 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-674 |
| Cow position: | chr3:18463244-18462702 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 141-675 |
| Cow position: | chr3:53515935-53516481 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr3:7480903-7480356 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr3:10239983-10240529 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-679 |
| Cow position: | chr3:18811829-18812378 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 141-679 |
| Cow position: | chr3:20380866-20381415 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-679 |
| Cow position: | chr3:23213748-23213204 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr3:34030569-34030032 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr3:37969370-37969914 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-679 |
| Cow position: | chr3:40823716-40824261 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 141-679 |
| Cow position: | chr3:49137210-49136688 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 11 |
| Conread position: | 141-679 |
| Cow position: | chr3:63003219-63002671 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 141-679 |
| Cow position: | chr3:66620502-66621055 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 141-679 |
| Cow position: | chr3:72630397-72630946 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 142-287 |
| Cow position: | chr3:77424133-77424282 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 82 |
| Conread position: | 142-394 |
| Cow position: | chr3:15179029-15179275 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 142-664 |
| Cow position: | chr3:27918757-27919280 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 111 |
| Conread position: | 142-664 |
| Cow position: | chr3:64650948-64651486 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 82 |
| Conread position: | 142-679 |
| Cow position: | chr3:21182359-21181828 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 52 |
| Conread position: | 142-679 |
| Cow position: | chr3:56340098-56339546 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 89 |
| Conread position: | 146-429 |
| Cow position: | chr3:18542075-18541796 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 149-665 |
| Cow position: | chr3:24353276-24353766 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 151-673 |
| Cow position: | chr3:59861703-59862239 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 151-679 |
| Cow position: | chr3:30314890-30315433 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 153-679 |
| Cow position: | chr3:2710532-2709996 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 79 |
| Conread position: | 154-668 |
| Cow position: | chr3:49678132-49678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 154-678 |
| Cow position: | chr3:77443695-77444188 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 155-668 |
| Cow position: | chr3:6686149-6686669 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 157-674 |
| Cow position: | chr3:57484388-57483862 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 158-481 |
| Cow position: | chr3:52863792-52863470 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 159-601 |
| Cow position: | chr3:65582925-65582485 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 160 |
| Conread position: | 159-680 |
| Cow position: | chr3:58947969-58948489 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 182-679 |
| Cow position: | chr3:78027056-78026547 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 201-679 |
| Cow position: | chr3:64357403-64356922 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 156 |
| Conread position: | 204-680 |
| Cow position: | chr3:19890211-19889729 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 25 |
| Conread position: | 267-664 |
| Cow position: | chr3:7169661-7170057 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 110 |
| Conread position: | 284-679 |
| Cow position: | chr3:42447570-42447980 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 105 |
| Conread position: | 298-678 |
| Cow position: | chr3:19721190-19720802 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 95 |
| Conread position: | 315-675 |
| Cow position: | chr3:53411674-53412036 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 322-679 |
| Cow position: | chr3:19944733-19945102 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 331-600 |
| Cow position: | chr3:56145797-56146071 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 57 |
| Conread position: | 385-679 |
| Cow position: | chr3:12679280-12678969 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 391-679 |
| Cow position: | chr3:56098786-56099092 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 59, 35 |
| Conread position: | 394-679 |
| Cow position: | chr3:49271532-49271241 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 53, 128 |
| Conread position: | 403-664 |
| Cow position: | chr3:2869360-2869637 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 415-679 |
| Cow position: | chr3:18355674-18355399 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 28 |
| Conread position: | 439-678 |
| Cow position: | chr3:48058738-48058485 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 240 |
| Conread position: | 443-664 |
| Cow position: | chr3:63915494-63915258 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 461-673 |
| Cow position: | chr3:5994449-5994222 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 490-679 |
| Cow position: | chr3:24445410-24445209 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.