Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 1-382 |
| Cow position: | chr4:41120316-41120691 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 40 |
| Conread position: | 1-535 |
| Cow position: | chr4:51043238-51042732 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 24 |
| Conread position: | 2-664 |
| Cow position: | chr4:602999-603679 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 158 |
| Conread position: | 16-679 |
| Cow position: | chr4:44925491-44924844 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 134-413 |
| Cow position: | chr4:45049171-45048894 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 137-259 |
| Cow position: | chr4:12587428-12587551 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 141-390 |
| Cow position: | chr4:17926120-17925870 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-423 |
| Cow position: | chr4:44725219-44725498 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 141-472 |
| Cow position: | chr4:16360014-16360330 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 92 |
| Conread position: | 141-505 |
| Cow position: | chr4:26886727-26886364 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 141-602 |
| Cow position: | chr4:16326647-16326181 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-638 |
| Cow position: | chr4:12241083-12240575 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-664 |
| Cow position: | chr4:3125923-3126456 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-664 |
| Cow position: | chr4:5880293-5880817 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr4:18190533-18191059 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 141-664 |
| Cow position: | chr4:18424397-18423860 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 141-667 |
| Cow position: | chr4:356043-356577 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-673 |
| Cow position: | chr4:6490230-6489690 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-673 |
| Cow position: | chr4:48026531-48027073 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-675 |
| Cow position: | chr4:38929551-38930079 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 346 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 141-679 |
| Cow position: | chr4:18517030-18517578 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr4:25599368-25598817 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr4:31669406-31669952 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr4:33072693-33072141 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr4:36896502-36897052 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-679 |
| Cow position: | chr4:43319512-43318963 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr4:57984115-57984658 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 142-669 |
| Cow position: | chr4:31565171-31564639 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 29 |
| Conread position: | 142-679 |
| Cow position: | chr4:43881242-43881785 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 142-680 |
| Cow position: | chr4:61694382-61693859 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 149-668 |
| Cow position: | chr4:27301313-27300807 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 151-664 |
| Cow position: | chr4:529534-530063 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 248 |
| Conread position: | 153-679 |
| Cow position: | chr4:33595705-33596216 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 364 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 154-679 |
| Cow position: | chr4:13493456-13493998 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 71 |
| Conread position: | 156-494 |
| Cow position: | chr4:16056741-16057079 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 76 |
| Conread position: | 156-664 |
| Cow position: | chr4:32212308-32212834 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 68 |
| Conread position: | 156-679 |
| Cow position: | chr4:60264017-60263486 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 159-679 |
| Cow position: | chr4:46664666-46665195 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 159-679 |
| Cow position: | chr4:62568577-62569112 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 132 |
| Conread position: | 195-673 |
| Cow position: | chr4:4416257-4416744 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 33 |
| Conread position: | 207-601 |
| Cow position: | chr4:1367953-1367575 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 241, 21 |
| Conread position: | 254-601 |
| Cow position: | chr4:64854021-64853660 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 101 |
| Conread position: | 268-597 |
| Cow position: | chr4:54239268-54239597 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 9 |
| Conread position: | 269-679 |
| Cow position: | chr4:12587593-12588012 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 127 |
| Conread position: | 313-674 |
| Cow position: | chr4:10881849-10882221 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 62 |
| Conread position: | 316-679 |
| Cow position: | chr4:29583885-29583531 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 252, 77 |
| Conread position: | 359-679 |
| Cow position: | chr4:28831906-28832234 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 87, 34 |
| Conread position: | 388-605 |
| Cow position: | chr4:494208-493986 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 391-679 |
| Cow position: | chr4:17925583-17925285 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 403-679 |
| Cow position: | chr4:11110886-11110585 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 405-675 |
| Cow position: | chr4:47254537-47254257 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 41, 140 |
| Conread position: | 418-679 |
| Cow position: | chr4:1049858-1049585 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 422-679 |
| Cow position: | chr4:6206003-6206273 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 424-679 |
| Cow position: | chr4:16360319-16360591 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 436-597 |
| Cow position: | chr4:50975038-50975207 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 436-679 |
| Cow position: | chr4:22473776-22474028 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 106, 7 |
| Conread position: | 443-679 |
| Cow position: | chr4:44726025-44726273 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 451-679 |
| Cow position: | chr4:16639047-16639290 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.