Cow genome map
| Conread name: | Emb1-C0005191_I18 |
| Conread position: | 1-664 |
| Cow position: | chr5:41528654-41528014 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 103 |
| Conread position: | 1-679 |
| Cow position: | chr5:30579429-30580104 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 60 |
| Conread position: | 1-679 |
| Cow position: | chr5:57482439-57481764 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 103 |
| Conread position: | 13-412 |
| Cow position: | chr5:32772594-32772981 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 109 |
| Conread position: | 14-664 |
| Cow position: | chr5:58196114-58196775 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 227 |
| Conread position: | 16-679 |
| Cow position: | chr5:14785258-14784593 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 103 |
| Conread position: | 18-601 |
| Cow position: | chr5:32947155-32947744 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 493, 0 |
| Conread position: | 136-275 |
| Cow position: | chr5:49119056-49118919 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 140-679 |
| Cow position: | chr5:2914676-2915221 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 141-325 |
| Cow position: | chr5:31706796-31706981 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-592 |
| Cow position: | chr5:31101398-31100949 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 141-599 |
| Cow position: | chr5:415493-415032 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 141-602 |
| Cow position: | chr5:4089293-4089756 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 141-656 |
| Cow position: | chr5:4018977-4018449 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 141-664 |
| Cow position: | chr5:241424-241954 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr5:3964672-3965209 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 141-664 |
| Cow position: | chr5:6588798-6588263 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 141-664 |
| Cow position: | chr5:12643497-12642966 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 141-664 |
| Cow position: | chr5:18122249-18121725 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 89 |
| Conread position: | 141-664 |
| Cow position: | chr5:23960093-23959556 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr5:44459705-44460242 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-664 |
| Cow position: | chr5:59060840-59061373 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-669 |
| Cow position: | chr5:4069443-4069978 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-675 |
| Cow position: | chr5:35526041-35526567 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 50 |
| Conread position: | 141-678 |
| Cow position: | chr5:51770720-51770174 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 141-679 |
| Cow position: | chr5:3786154-3786694 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr5:4385471-4386018 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 141-679 |
| Cow position: | chr5:7274052-7274603 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 141-679 |
| Cow position: | chr5:24098896-24099441 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr5:35300321-35300872 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 141-679 |
| Cow position: | chr5:37732572-37733122 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 84 |
| Conread position: | 141-679 |
| Cow position: | chr5:48808506-48807964 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 141-679 |
| Cow position: | chr5:54792411-54791860 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 141-679 |
| Cow position: | chr5:55628214-55628766 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 142-394 |
| Cow position: | chr5:26084354-26084106 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 48, 82 |
| Conread position: | 142-664 |
| Cow position: | chr5:10776043-10775511 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 82 |
| Conread position: | 142-679 |
| Cow position: | chr5:10919047-10919601 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 82 |
| Conread position: | 142-679 |
| Cow position: | chr5:46738351-46737799 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 142-679 |
| Cow position: | chr5:64781790-64781241 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 142-679 |
| Cow position: | chr5:73489333-73488783 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 151-364 |
| Cow position: | chr5:29761790-29762000 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 151-679 |
| Cow position: | chr5:3503868-3503346 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 81 |
| Conread position: | 154-676 |
| Cow position: | chr5:672858-673399 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 351 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 7, 140 |
| Conread position: | 155-668 |
| Cow position: | chr5:45700554-45701076 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 69 |
| Conread position: | 155-679 |
| Cow position: | chr5:34696842-34697378 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 156-679 |
| Cow position: | chr5:27002269-27002780 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 158-553 |
| Cow position: | chr5:24589002-24589393 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 159-601 |
| Cow position: | chr5:49591853-49591411 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 161-679 |
| Cow position: | chr5:43003337-43003855 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 70 |
| Conread position: | 169-678 |
| Cow position: | chr5:49129801-49130327 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 5, 257 |
| Conread position: | 188-679 |
| Cow position: | chr5:1341761-1341257 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 41 |
| Conread position: | 195-664 |
| Cow position: | chr5:4757887-4757404 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 201-664 |
| Cow position: | chr5:45181861-45181385 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 27 |
| Conread position: | 239-664 |
| Cow position: | chr5:42505324-42505763 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 157 |
| Conread position: | 251-664 |
| Cow position: | chr5:38073364-38073791 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 145 |
| Conread position: | 270-668 |
| Cow position: | chr5:46629830-46629422 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 9 |
| Conread position: | 300-602 |
| Cow position: | chr5:46005470-46005164 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 144, 11 |
| Conread position: | 305-668 |
| Cow position: | chr5:29766275-29766648 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 91 |
| Conread position: | 339-675 |
| Cow position: | chr5:28241475-28241823 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 57 |
| Conread position: | 342-679 |
| Cow position: | chr5:32363404-32363744 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 56 |
| Conread position: | 404-679 |
| Cow position: | chr5:32308908-32308619 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 155 |
| Conread position: | 413-674 |
| Cow position: | chr5:36444187-36443909 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 14, 99 |
| Conread position: | 413-679 |
| Cow position: | chr5:28950373-28950088 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 423-679 |
| Cow position: | chr5:39246309-39246037 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 427-679 |
| Cow position: | chr5:6154393-6154126 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 17, 233 |
Show alignments to all cow chromosomes.