Cow genome map

Conread name: Emb1-C0005191_I18

Conread position: 1-600
Cow position: chr6:28275225-28275806 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 103

Conread position: 2-323
Cow position: chr6:26044763-26045096 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 238
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 10, 233

Conread position: 5-332
Cow position: chr6:2887420-2887742 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 134

Conread position: 5-644
Cow position: chr6:38900918-38900293 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 89

Conread position: 14-664
Cow position: chr6:13847280-13847927 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 81

Conread position: 36-602
Cow position: chr6:66541914-66542483 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 68

Conread position: 42-673
Cow position: chr6:43793427-43792808 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 62

Conread position: 125-373
Cow position: chr6:10500648-10500896 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 67, 27

Conread position: 130-679
Cow position: chr6:40554243-40553661 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 388

Conread position: 133-673
Cow position: chr6:69143007-69143534 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 352
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 120, 55

Conread position: 136-366
Cow position: chr6:58027113-58027343 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 9

Conread position: 136-390
Cow position: chr6:15280195-15279943 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 90

Conread position: 136-679
Cow position: chr6:3488063-3487508 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 97

Conread position: 136-679
Cow position: chr6:15140823-15140262 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 97

Conread position: 140-454
Cow position: chr6:29311861-29312174 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 12

Conread position: 141-287
Cow position: chr6:65881276-65881422 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 11

Conread position: 141-326
Cow position: chr6:8202107-8202292 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 11

Conread position: 141-334
Cow position: chr6:55543955-55543762 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 11

Conread position: 141-386
Cow position: chr6:40867191-40866951 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 51, 11

Conread position: 141-390
Cow position: chr6:3277582-3277343 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-390
Cow position: chr6:39437917-39438159 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-409
Cow position: chr6:30274808-30274547 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 13

Conread position: 141-445
Cow position: chr6:36526419-36526718 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-486
Cow position: chr6:34892635-34892291 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 11

Conread position: 141-555
Cow position: chr6:39908891-39909307 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-557
Cow position: chr6:65841956-65842369 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-601
Cow position: chr6:66232182-66232642 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 23

Conread position: 141-635
Cow position: chr6:11724741-11724238 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 14

Conread position: 141-649
Cow position: chr6:3889114-3888610 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-663
Cow position: chr6:13104422-13104958 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chr6:2375065-2375599 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chr6:24239425-24239958 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-664
Cow position: chr6:26670503-26669965 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 13

Conread position: 141-664
Cow position: chr6:43618079-43618616 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 21

Conread position: 141-666
Cow position: chr6:27169943-27170477 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 91

Conread position: 141-674
Cow position: chr6:12529855-12530395 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 24

Conread position: 141-674
Cow position: chr6:21973021-21973564 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 18

Conread position: 141-679
Cow position: chr6:185419-184868 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 40

Conread position: 141-679
Cow position: chr6:1822263-1821710 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr6:5949410-5948862 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr6:6566977-6567505 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 11

Conread position: 141-679
Cow position: chr6:13944271-13944822 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 141-679
Cow position: chr6:17046424-17046967 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr6:20560742-20560187 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr6:35876345-35875801 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr6:47042828-47042286 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 11

Conread position: 141-679
Cow position: chr6:51086310-51086858 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 142-366
Cow position: chr6:14852214-14851988 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 83

Conread position: 142-663
Cow position: chr6:59918706-59918176 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 30

Conread position: 142-664
Cow position: chr6:16052244-16052780 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 12

Conread position: 142-679
Cow position: chr6:27529638-27529086 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 83

Conread position: 142-679
Cow position: chr6:52693393-52693931 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 83

Conread position: 151-386
Cow position: chr6:40813294-40813057 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 74

Conread position: 151-388
Cow position: chr6:28063708-28063946 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 45, 73

Conread position: 151-389
Cow position: chr6:11274542-11274308 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 40, 73

Conread position: 154-293
Cow position: chr6:25214636-25214777 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 38, 71

Conread position: 154-679
Cow position: chr6:8760923-8760375 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 56

Conread position: 155-673
Cow position: chr6:27470981-27471508 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 77

Conread position: 156-668
Cow position: chr6:40315766-40316288 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 75

Conread position: 156-668
Cow position: chr6:58600864-58601384 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 38

Conread position: 156-679
Cow position: chr6:30479487-30480016 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 75

Conread position: 159-679
Cow position: chr6:6475486-6474952 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 77

Conread position: 160-679
Cow position: chr6:65941444-65940907 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 346
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 32, 70

Conread position: 170-671
Cow position: chr6:914027-914538 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 62

Conread position: 191-679
Cow position: chr6:15021635-15022123 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 325
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 136, 38

Conread position: 239-664
Cow position: chr6:28491103-28490668 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 157

Conread position: 271-664
Cow position: chr6:68027416-68027822 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 243
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 66, 84

Conread position: 292-679
Cow position: chr6:65881727-65882126 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 100

Conread position: 313-669
Cow position: chr6:8202718-8203088 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 83

Conread position: 315-601
Cow position: chr6:26045376-26045668 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 129, 73

Conread position: 318-679
Cow position: chr6:25214766-25215134 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 12

Conread position: 322-679
Cow position: chr6:8021441-8021796 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 58

Conread position: 330-679
Cow position: chr6:55542700-55542350 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 63

Conread position: 385-661
Cow position: chr6:38271507-38271786 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 65, 113

Conread position: 391-679
Cow position: chr6:3276763-3276459 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 56, 0

Conread position: 391-679
Cow position: chr6:15279195-15278896 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 205
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 56, 100

Conread position: 391-679
Cow position: chr6:39438378-39438680 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 216
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 120, 0

Conread position: 394-667
Cow position: chr6:40866703-40866414 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 397-679
Cow position: chr6:56043101-56042804 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 50, 40

Conread position: 403-679
Cow position: chr6:30274268-30273978 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 247

Conread position: 403-679
Cow position: chr6:51730721-51731012 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 208
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 44, 0

Conread position: 414-679
Cow position: chr6:13316837-13316558 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 33, 0

Conread position: 416-679
Cow position: chr6:28169540-28169819 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 422-600
Cow position: chr6:36526904-36527093 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 422-679
Cow position: chr6:39334227-39333954 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 25, 0

Conread position: 431-679
Cow position: chr6:64716644-64716901 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 80, 22

Conread position: 432-675
Cow position: chr6:10609558-10609818 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 443-651
Cow position: chr6:14389242-14389465 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 444-679
Cow position: chr6:58027339-58027588 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 449-664
Cow position: chr6:13310682-13310460 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 83

Conread position: 464-679
Cow position: chr6:34891439-34891209 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 480-679
Cow position: chr6:51715241-51715452 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 0

Show alignments to all cow chromosomes.