Cow genome map

Conread name: Emb1-C0005191_I18

Conread position: 1-600
Cow position: chr8:47081374-47081971 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 421
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 40, 66

Conread position: 1-672
Cow position: chr8:38606674-38606016 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 103

Conread position: 1-679
Cow position: chr8:2170854-2170180 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 87

Conread position: 1-679
Cow position: chr8:11832223-11832903 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 102

Conread position: 1-679
Cow position: chr8:25408250-25408921 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 27

Conread position: 1-679
Cow position: chr8:25522925-25523596 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 120

Conread position: 2-679
Cow position: chr8:19330262-19330906 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 94

Conread position: 14-678
Cow position: chr8:13698663-13697992 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 14

Conread position: 126-679
Cow position: chr8:32318930-32318358 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 103

Conread position: 136-667
Cow position: chr8:11802458-11803004 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 194

Conread position: 136-672
Cow position: chr8:2886382-2886934 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 91

Conread position: 136-679
Cow position: chr8:14591266-14590708 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 89

Conread position: 140-664
Cow position: chr8:1319682-1320220 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 84

Conread position: 141-395
Cow position: chr8:41944069-41944325 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 49, 11

Conread position: 141-421
Cow position: chr8:38391014-38391288 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-459
Cow position: chr8:10742983-10742656 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-555
Cow position: chr8:12449595-12450014 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-597
Cow position: chr8:6684088-6684549 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-663
Cow position: chr8:32631386-32630850 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 13

Conread position: 141-664
Cow position: chr8:6065127-6064598 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-674
Cow position: chr8:23771282-23771825 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-678
Cow position: chr8:33589022-33589568 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr8:3856367-3855831 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-679
Cow position: chr8:4687043-4687596 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 21

Conread position: 141-679
Cow position: chr8:7161539-7162091 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr8:8911153-8911695 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 10

Conread position: 141-679
Cow position: chr8:14928237-14927685 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-679
Cow position: chr8:17311667-17312217 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-679
Cow position: chr8:24915694-24915142 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr8:25776025-25775482 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 82

Conread position: 141-679
Cow position: chr8:39195569-39195021 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 84

Conread position: 141-679
Cow position: chr8:42484560-42485110 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr8:46050830-46051381 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-679
Cow position: chr8:47661677-47661126 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-679
Cow position: chr8:49215082-49215635 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr8:50288280-50287731 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-679
Cow position: chr8:50994433-50994964 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr8:60061024-60061577 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 142-664
Cow position: chr8:11969637-11969104 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 82

Conread position: 142-679
Cow position: chr8:44243927-44243387 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 90

Conread position: 142-679
Cow position: chr8:50930484-50929936 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 83

Conread position: 151-679
Cow position: chr8:5016837-5017373 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 81

Conread position: 153-679
Cow position: chr8:19051134-19051669 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 72

Conread position: 154-495
Cow position: chr8:36635886-36635547 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 71

Conread position: 154-668
Cow position: chr8:42419778-42419256 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 71

Conread position: 156-664
Cow position: chr8:11762598-11763119 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 66

Conread position: 156-672
Cow position: chr8:30487725-30487197 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 75

Conread position: 156-679
Cow position: chr8:8315794-8315267 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 75

Conread position: 158-533
Cow position: chr8:10366376-10366012 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 243
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 26

Conread position: 161-679
Cow position: chr8:8308256-8308788 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 70

Conread position: 165-679
Cow position: chr8:59262255-59261725 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 234

Conread position: 195-602
Cow position: chr8:9964750-9964362 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 287
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 252, 33

Conread position: 195-679
Cow position: chr8:45692317-45691828 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 35

Conread position: 201-679
Cow position: chr8:59141028-59141517 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 195

Conread position: 203-672
Cow position: chr8:56883218-56883687 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 27

Conread position: 207-679
Cow position: chr8:28878387-28877910 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 14

Conread position: 223-668
Cow position: chr8:42579886-42579396 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 328
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 108, 7

Conread position: 237-679
Cow position: chr8:42817504-42817056 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 300
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 31, 93

Conread position: 238-678
Cow position: chr8:38585588-38585150 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 72

Conread position: 244-679
Cow position: chr8:35212631-35213075 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 39

Conread position: 294-673
Cow position: chr8:20136812-20136423 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 265
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 153, 73

Conread position: 303-678
Cow position: chr8:46147532-46147148 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 263
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 141, 23

Conread position: 313-678
Cow position: chr8:49859948-49859570 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 257
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 134, 83

Conread position: 345-679
Cow position: chr8:42657120-42656777 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 238
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 99, 51

Conread position: 380-664
Cow position: chr8:61906038-61906338 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 416-640
Cow position: chr8:38391572-38391812 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 433-679
Cow position: chr8:29007578-29007833 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 78, 14

Conread position: 443-679
Cow position: chr8:41644723-41644477 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 98, 56

Conread position: 490-679
Cow position: chr8:3785626-3785830 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 499-674
Cow position: chr8:36635500-36635316 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 12, 0

Show alignments to all cow chromosomes.