Cow genome map
Conread name: | Emb1-C0005191_I18 |
Conread position: | 1-679 |
Cow position: | chr9:22653743-22654417 (view UCSC Genome Browser custom track) |
Alignm length: | 700 |
Alignm identity: | 519 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 104 |
Conread position: | 1-679 |
Cow position: | chr9:51182016-51181340 (view UCSC Genome Browser custom track) |
Alignm length: | 698 |
Alignm identity: | 504 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 191, 62 |
Conread position: | 1-679 |
Cow position: | chr9:59173983-59173303 (view UCSC Genome Browser custom track) |
Alignm length: | 698 |
Alignm identity: | 521 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 122 |
Conread position: | 5-597 |
Cow position: | chr9:30487734-30488323 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 444 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 128 |
Conread position: | 5-679 |
Cow position: | chr9:3542989-3543703 (view UCSC Genome Browser custom track) |
Alignm length: | 720 |
Alignm identity: | 494 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 15 |
Conread position: | 13-664 |
Cow position: | chr9:1251811-1251167 (view UCSC Genome Browser custom track) |
Alignm length: | 673 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 12 |
Conread position: | 15-589 |
Cow position: | chr9:59444037-59444589 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 89 |
Conread position: | 25-579 |
Cow position: | chr9:1636148-1636694 (view UCSC Genome Browser custom track) |
Alignm length: | 577 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 78 |
Conread position: | 25-584 |
Cow position: | chr9:59425970-59426515 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 165, 65 |
Conread position: | 126-679 |
Cow position: | chr9:5004262-5004816 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 27 |
Conread position: | 126-679 |
Cow position: | chr9:59482520-59481948 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 348, 103 |
Conread position: | 135-679 |
Cow position: | chr9:59536384-59536941 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 17 |
Conread position: | 136-317 |
Cow position: | chr9:6050759-6050575 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 136 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 18, 90 |
Conread position: | 136-679 |
Cow position: | chr9:9013388-9013939 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 98 |
Conread position: | 136-679 |
Cow position: | chr9:20308858-20308303 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 9 |
Conread position: | 136-679 |
Cow position: | chr9:29027910-29027366 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 16 |
Conread position: | 137-679 |
Cow position: | chr9:5514714-5515262 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 15 |
Conread position: | 141-288 |
Cow position: | chr9:25023004-25022857 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 114 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 51, 11 |
Conread position: | 141-485 |
Cow position: | chr9:6830212-6829874 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 82 |
Conread position: | 141-602 |
Cow position: | chr9:2053059-2053516 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 90 |
Conread position: | 141-603 |
Cow position: | chr9:30826974-30827437 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 13 |
Conread position: | 141-663 |
Cow position: | chr9:25187397-25187933 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 85 |
Conread position: | 141-664 |
Cow position: | chr9:222235-221698 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 13 |
Conread position: | 141-664 |
Cow position: | chr9:780511-779979 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 13 |
Conread position: | 141-664 |
Cow position: | chr9:28440102-28440638 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 13 |
Conread position: | 141-664 |
Cow position: | chr9:28678266-28678800 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 11 |
Conread position: | 141-664 |
Cow position: | chr9:45873639-45874164 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 13 |
Conread position: | 141-664 |
Cow position: | chr9:51210975-51211510 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 13 |
Conread position: | 141-668 |
Cow position: | chr9:52291716-52292243 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 14 |
Conread position: | 141-674 |
Cow position: | chr9:4532791-4533331 (view UCSC Genome Browser custom track) |
Alignm length: | 550 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 11 |
Conread position: | 141-674 |
Cow position: | chr9:47002489-47003033 (view UCSC Genome Browser custom track) |
Alignm length: | 552 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 11 |
Conread position: | 141-679 |
Cow position: | chr9:7003082-7003644 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 11 |
Conread position: | 141-679 |
Cow position: | chr9:7061795-7061237 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 11 |
Conread position: | 141-679 |
Cow position: | chr9:10322099-10322649 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 21 |
Conread position: | 141-679 |
Cow position: | chr9:16176067-16176614 (view UCSC Genome Browser custom track) |
Alignm length: | 556 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 11 |
Conread position: | 141-679 |
Cow position: | chr9:18509503-18508968 (view UCSC Genome Browser custom track) |
Alignm length: | 552 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 8 |
Conread position: | 141-679 |
Cow position: | chr9:28022096-28022649 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 91 |
Conread position: | 141-679 |
Cow position: | chr9:29628450-29627908 (view UCSC Genome Browser custom track) |
Alignm length: | 554 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 21 |
Conread position: | 141-679 |
Cow position: | chr9:32969244-32969792 (view UCSC Genome Browser custom track) |
Alignm length: | 554 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 11 |
Conread position: | 141-679 |
Cow position: | chr9:37162515-37161968 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 11 |
Conread position: | 141-679 |
Cow position: | chr9:37970911-37970351 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 11 |
Conread position: | 141-679 |
Cow position: | chr9:42309981-42310525 (view UCSC Genome Browser custom track) |
Alignm length: | 552 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 11 |
Conread position: | 141-679 |
Cow position: | chr9:60277723-60277170 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 419 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 11 |
Conread position: | 142-563 |
Cow position: | chr9:44818475-44818893 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 76 |
Conread position: | 142-664 |
Cow position: | chr9:50791006-50791542 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 89 |
Conread position: | 142-674 |
Cow position: | chr9:42569199-42569743 (view UCSC Genome Browser custom track) |
Alignm length: | 550 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 90 |
Conread position: | 142-679 |
Cow position: | chr9:130896-130344 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 83 |
Conread position: | 142-679 |
Cow position: | chr9:2171356-2171892 (view UCSC Genome Browser custom track) |
Alignm length: | 552 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 30 |
Conread position: | 142-679 |
Cow position: | chr9:27034980-27035527 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 10 |
Conread position: | 142-679 |
Cow position: | chr9:30672665-30673211 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 88 |
Conread position: | 146-464 |
Cow position: | chr9:14762148-14761840 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 79 |
Conread position: | 146-679 |
Cow position: | chr9:6249596-6250143 (view UCSC Genome Browser custom track) |
Alignm length: | 553 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 79 |
Conread position: | 151-679 |
Cow position: | chr9:31807872-31808421 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 73 |
Conread position: | 156-662 |
Cow position: | chr9:828815-828307 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 345 |
Alignm E-value: | 9e-39 |
Alignm gaps (pig, cow): | 256, 38 |
Conread position: | 162-664 |
Cow position: | chr9:4943500-4942981 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 69 |
Conread position: | 170-665 |
Cow position: | chr9:9705872-9706373 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 59 |
Conread position: | 224-668 |
Cow position: | chr9:2209674-2210125 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 78 |
Conread position: | 250-679 |
Cow position: | chr9:54924961-54925396 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 195, 13 |
Conread position: | 267-675 |
Cow position: | chr9:8401960-8402368 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 183, 38 |
Conread position: | 267-679 |
Cow position: | chr9:10936998-10937438 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 303 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 148, 129 |
Conread position: | 305-668 |
Cow position: | chr9:50729659-50729299 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 297, 93 |
Conread position: | 322-664 |
Cow position: | chr9:3148796-3148441 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 249 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 122, 40 |
Conread position: | 356-674 |
Cow position: | chr9:17305468-17305137 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 40 |
Conread position: | 365-679 |
Cow position: | chr9:26102568-26102246 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 223 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 81, 70 |
Conread position: | 385-674 |
Cow position: | chr9:26083983-26083685 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 211 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 62, 97 |
Conread position: | 403-664 |
Cow position: | chr9:31065272-31065548 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 195 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 41, 171 |
Conread position: | 403-675 |
Cow position: | chr9:35316299-35316036 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 192 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 45, 107 |
Conread position: | 404-679 |
Cow position: | chr9:1980828-1981118 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 199 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 43, 16 |
Conread position: | 433-668 |
Cow position: | chr9:2186461-2186701 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 162 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 14, 185 |
Conread position: | 454-675 |
Cow position: | chr9:4649989-4649753 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 169 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 69, 54 |
Show alignments to all cow chromosomes.