Cow genome map

Conread name: Emb1-C0005191_I18

Conread position: 1-679
Cow position: chr9:22653743-22654417 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 104

Conread position: 1-679
Cow position: chr9:51182016-51181340 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 62

Conread position: 1-679
Cow position: chr9:59173983-59173303 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 122

Conread position: 5-597
Cow position: chr9:30487734-30488323 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 128

Conread position: 5-679
Cow position: chr9:3542989-3543703 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 15

Conread position: 13-664
Cow position: chr9:1251811-1251167 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 12

Conread position: 15-589
Cow position: chr9:59444037-59444589 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 89

Conread position: 25-579
Cow position: chr9:1636148-1636694 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 78

Conread position: 25-584
Cow position: chr9:59425970-59426515 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 65

Conread position: 126-679
Cow position: chr9:5004262-5004816 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 27

Conread position: 126-679
Cow position: chr9:59482520-59481948 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 103

Conread position: 135-679
Cow position: chr9:59536384-59536941 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 17

Conread position: 136-317
Cow position: chr9:6050759-6050575 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 18, 90

Conread position: 136-679
Cow position: chr9:9013388-9013939 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 98

Conread position: 136-679
Cow position: chr9:20308858-20308303 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 9

Conread position: 136-679
Cow position: chr9:29027910-29027366 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 16

Conread position: 137-679
Cow position: chr9:5514714-5515262 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 15

Conread position: 141-288
Cow position: chr9:25023004-25022857 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 51, 11

Conread position: 141-485
Cow position: chr9:6830212-6829874 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 82

Conread position: 141-602
Cow position: chr9:2053059-2053516 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 90

Conread position: 141-603
Cow position: chr9:30826974-30827437 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-663
Cow position: chr9:25187397-25187933 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 85

Conread position: 141-664
Cow position: chr9:222235-221698 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 13

Conread position: 141-664
Cow position: chr9:780511-779979 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 13

Conread position: 141-664
Cow position: chr9:28440102-28440638 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chr9:28678266-28678800 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 141-664
Cow position: chr9:45873639-45874164 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chr9:51210975-51211510 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-668
Cow position: chr9:52291716-52292243 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 14

Conread position: 141-674
Cow position: chr9:4532791-4533331 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-674
Cow position: chr9:47002489-47003033 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr9:7003082-7003644 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr9:7061795-7061237 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr9:10322099-10322649 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 21

Conread position: 141-679
Cow position: chr9:16176067-16176614 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr9:18509503-18508968 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 8

Conread position: 141-679
Cow position: chr9:28022096-28022649 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 91

Conread position: 141-679
Cow position: chr9:29628450-29627908 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 21

Conread position: 141-679
Cow position: chr9:32969244-32969792 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 141-679
Cow position: chr9:37162515-37161968 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr9:37970911-37970351 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chr9:42309981-42310525 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-679
Cow position: chr9:60277723-60277170 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 142-563
Cow position: chr9:44818475-44818893 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 76

Conread position: 142-664
Cow position: chr9:50791006-50791542 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 89

Conread position: 142-674
Cow position: chr9:42569199-42569743 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 90

Conread position: 142-679
Cow position: chr9:130896-130344 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 83

Conread position: 142-679
Cow position: chr9:2171356-2171892 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 30

Conread position: 142-679
Cow position: chr9:27034980-27035527 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 10

Conread position: 142-679
Cow position: chr9:30672665-30673211 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 88

Conread position: 146-464
Cow position: chr9:14762148-14761840 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 79

Conread position: 146-679
Cow position: chr9:6249596-6250143 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 79

Conread position: 151-679
Cow position: chr9:31807872-31808421 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 73

Conread position: 156-662
Cow position: chr9:828815-828307 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 345
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 256, 38

Conread position: 162-664
Cow position: chr9:4943500-4942981 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 69

Conread position: 170-665
Cow position: chr9:9705872-9706373 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 59

Conread position: 224-668
Cow position: chr9:2209674-2210125 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 78

Conread position: 250-679
Cow position: chr9:54924961-54925396 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 13

Conread position: 267-675
Cow position: chr9:8401960-8402368 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 38

Conread position: 267-679
Cow position: chr9:10936998-10937438 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 303
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 148, 129

Conread position: 305-668
Cow position: chr9:50729659-50729299 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 93

Conread position: 322-664
Cow position: chr9:3148796-3148441 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 249
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 122, 40

Conread position: 356-674
Cow position: chr9:17305468-17305137 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 40

Conread position: 365-679
Cow position: chr9:26102568-26102246 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 223
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 81, 70

Conread position: 385-674
Cow position: chr9:26083983-26083685 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 62, 97

Conread position: 403-664
Cow position: chr9:31065272-31065548 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 195
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 171

Conread position: 403-675
Cow position: chr9:35316299-35316036 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 192
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 45, 107

Conread position: 404-679
Cow position: chr9:1980828-1981118 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 199
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 16

Conread position: 433-668
Cow position: chr9:2186461-2186701 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 162
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 185

Conread position: 454-675
Cow position: chr9:4649989-4649753 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 69, 54

Show alignments to all cow chromosomes.