Cow genome map

Conread name: Emb1-C0005191_I18

Conread position: 1-263
Cow position: chrX:5299140-5298896 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 85, 97

Conread position: 1-302
Cow position: chrX:13084650-13084352 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 65

Conread position: 1-679
Cow position: chrX:2482553-2481879 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 58

Conread position: 1-679
Cow position: chrX:30232024-30231346 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 49

Conread position: 2-679
Cow position: chrX:15599014-15599716 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 245

Conread position: 5-296
Cow position: chrX:22130162-22129884 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 215
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 59, 67

Conread position: 5-561
Cow position: chrX:31082055-31082586 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 110

Conread position: 13-367
Cow position: chrX:2101948-2102283 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 90

Conread position: 13-664
Cow position: chrX:982727-983398 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 216

Conread position: 13-664
Cow position: chrX:31187157-31186488 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 175

Conread position: 29-668
Cow position: chrX:27987737-27987087 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 126

Conread position: 51-679
Cow position: chrX:8940648-8940017 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 387
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 137, 168

Conread position: 86-679
Cow position: chrX:24135112-24134501 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 105

Conread position: 135-674
Cow position: chrX:12478916-12479453 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 99

Conread position: 136-668
Cow position: chrX:4796499-4797064 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 186

Conread position: 136-679
Cow position: chrX:32066967-32066414 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 9

Conread position: 137-680
Cow position: chrX:31198641-31199202 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 9

Conread position: 141-270
Cow position: chrX:8454951-8455081 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 13

Conread position: 141-278
Cow position: chrX:5833232-5833095 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 51, 11

Conread position: 141-366
Cow position: chrX:28758442-28758209 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 13

Conread position: 141-390
Cow position: chrX:23391393-23391145 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-393
Cow position: chrX:1942544-1942294 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 156
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 13

Conread position: 141-430
Cow position: chrX:21304326-21304039 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 13

Conread position: 141-574
Cow position: chrX:30173472-30173034 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 13

Conread position: 141-579
Cow position: chrX:29793918-29793482 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 13

Conread position: 141-597
Cow position: chrX:21223127-21223586 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-602
Cow position: chrX:5336287-5335821 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chrX:6872874-6872337 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chrX:8588377-8588900 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chrX:12288195-12287668 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chrX:12353439-12353977 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 141-664
Cow position: chrX:35530061-35530598 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-665
Cow position: chrX:11149118-11148599 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 13

Conread position: 141-669
Cow position: chrX:6250227-6249710 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 14

Conread position: 141-674
Cow position: chrX:29096407-29096941 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chrX:320669-321216 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chrX:970974-971526 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chrX:1547180-1547724 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chrX:13412933-13412381 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chrX:15127037-15126485 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chrX:16699506-16700053 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chrX:20797179-20797723 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 89

Conread position: 141-679
Cow position: chrX:21829730-21830279 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 141-679
Cow position: chrX:23040921-23040372 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chrX:23277225-23277777 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chrX:26758401-26757864 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 141-679
Cow position: chrX:26766993-26766459 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 11

Conread position: 141-679
Cow position: chrX:29285644-29286181 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 141-679
Cow position: chrX:29853363-29852814 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 11

Conread position: 141-679
Cow position: chrX:41850994-41850448 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 11

Conread position: 141-680
Cow position: chrX:20720189-20720747 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 142-306
Cow position: chrX:30366970-30366806 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 48, 80

Conread position: 142-307
Cow position: chrX:30183689-30183522 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 50, 81

Conread position: 142-358
Cow position: chrX:24484213-24483992 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 50, 0

Conread position: 142-393
Cow position: chrX:18219595-18219849 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 83

Conread position: 142-664
Cow position: chrX:18659584-18659052 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 83

Conread position: 142-664
Cow position: chrX:39563733-39563199 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 83

Conread position: 142-679
Cow position: chrX:6282547-6282008 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 95

Conread position: 142-679
Cow position: chrX:21579676-21580216 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 10

Conread position: 149-423
Cow position: chrX:12182932-12183204 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 78

Conread position: 151-390
Cow position: chrX:16812388-16812147 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 96

Conread position: 151-584
Cow position: chrX:27495131-27495565 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 80

Conread position: 151-664
Cow position: chrX:14786678-14786152 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 80

Conread position: 151-664
Cow position: chrX:37812368-37812898 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 74

Conread position: 151-669
Cow position: chrX:30711797-30712328 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 81

Conread position: 151-674
Cow position: chrX:21589181-21589713 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 73

Conread position: 151-678
Cow position: chrX:28651336-28650804 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 80

Conread position: 151-679
Cow position: chrX:10990782-10991302 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 336
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 50, 85

Conread position: 154-676
Cow position: chrX:2641409-2641932 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 330
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 79

Conread position: 156-640
Cow position: chrX:7752111-7752618 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 75

Conread position: 156-651
Cow position: chrX:24478862-24478366 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 74

Conread position: 156-664
Cow position: chrX:5394788-5394274 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 77

Conread position: 157-672
Cow position: chrX:16016210-16015694 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 74

Conread position: 157-679
Cow position: chrX:26528194-26528726 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 75

Conread position: 158-680
Cow position: chrX:24522992-24523499 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 333
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 108, 63

Conread position: 172-679
Cow position: chrX:16275878-16276397 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 59

Conread position: 201-668
Cow position: chrX:28627377-28626895 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 27

Conread position: 201-672
Cow position: chrX:21059048-21059525 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 20

Conread position: 207-668
Cow position: chrX:9063374-9063825 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 298
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 233, 21

Conread position: 235-679
Cow position: chrX:22488443-22488896 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 77

Conread position: 267-679
Cow position: chrX:18953356-18952930 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 129

Conread position: 270-668
Cow position: chrX:12669412-12669009 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 97

Conread position: 277-664
Cow position: chrX:28758160-28757759 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 119

Conread position: 305-679
Cow position: chrX:22816212-22816600 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 88

Conread position: 307-674
Cow position: chrX:30366402-30366036 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 42

Conread position: 315-679
Cow position: chrX:5304530-5304904 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 69

Conread position: 318-679
Cow position: chrX:30183547-30183169 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 75

Conread position: 322-662
Cow position: chrX:28553998-28554344 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 233
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 26, 8

Conread position: 362-602
Cow position: chrX:22129355-22129110 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 84, 34

Conread position: 365-653
Cow position: chrX:6242171-6241869 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 82, 23

Conread position: 366-664
Cow position: chrX:14595274-14595581 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 8, 180

Conread position: 385-679
Cow position: chrX:5297107-5296798 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 60, 0

Conread position: 391-601
Cow position: chrX:5971397-5971187 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 74

Conread position: 391-679
Cow position: chrX:23390070-23389766 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 56, 0

Conread position: 403-679
Cow position: chrX:38148053-38148341 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 211
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 44, 53

Conread position: 407-601
Cow position: chrX:31372280-31372477 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 40, 183

Conread position: 416-664
Cow position: chrX:12315283-12315020 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 422-595
Cow position: chrX:48055461-48055641 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 434-679
Cow position: chrX:27315765-27316025 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 161

Conread position: 436-679
Cow position: chrX:19874884-19875141 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 58, 0

Conread position: 437-679
Cow position: chrX:44388265-44388520 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 74, 44

Conread position: 443-664
Cow position: chrX:17051707-17051942 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 68, 25

Show alignments to all cow chromosomes.