Cow genome map

Conread name: Emb1-C0005191_K10

Conread position: 1-305
Cow position: chr5:62272463-62272151 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 69, 59

Conread position: 1-438
Cow position: chr5:29504693-29505149 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 340

Conread position: 1-510
Cow position: chr5:47601405-47601922 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 348
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 140, 49

Conread position: 1-535
Cow position: chr5:26376157-26376682 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 368
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 141, 44

Conread position: 1-556
Cow position: chr5:59303679-59303126 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 84

Conread position: 1-589
Cow position: chr5:37645659-37646285 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 410
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 144, 49

Conread position: 5-495
Cow position: chr5:45846093-45845596 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 334
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 137, 51

Conread position: 5-495
Cow position: chr5:46510270-46509770 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 51

Conread position: 5-521
Cow position: chr5:41608905-41609408 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 348
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 54, 147

Conread position: 5-536
Cow position: chr5:26096893-26097428 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 352
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 137, 45

Conread position: 6-260
Cow position: chr5:23006518-23006245 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 69, 98

Conread position: 6-287
Cow position: chr5:5194012-5194289 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 57, 53

Conread position: 6-287
Cow position: chr5:33189823-33190116 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 54, 78

Conread position: 6-312
Cow position: chr5:4015155-4014839 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 64, 40

Conread position: 6-313
Cow position: chr5:30347358-30347044 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 218
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 64, 20

Conread position: 6-314
Cow position: chr5:19969433-19969114 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 213
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 140, 49

Conread position: 6-332
Cow position: chr5:18127234-18127581 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 133, 14

Conread position: 6-400
Cow position: chr5:16184691-16185088 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 274
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 136, 44

Conread position: 6-402
Cow position: chr5:12134205-12134613 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 274
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 64, 45

Conread position: 6-451
Cow position: chr5:7140485-7140056 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 294
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 69, 43

Conread position: 6-454
Cow position: chr5:20974859-20974392 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 279

Conread position: 6-457
Cow position: chr5:10261644-10261177 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 314
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 140, 44

Conread position: 6-460
Cow position: chr5:54405296-54404831 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 318
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 136, 44

Conread position: 6-461
Cow position: chr5:15882883-15882405 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 159

Conread position: 6-489
Cow position: chr5:41951482-41951008 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 45

Conread position: 6-491
Cow position: chr5:1338300-1337809 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 331
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 64, 40

Conread position: 6-491
Cow position: chr5:5937923-5938412 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 44

Conread position: 6-491
Cow position: chr5:12873346-12873841 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 331
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 136, 46

Conread position: 6-491
Cow position: chr5:24348720-24349197 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 45

Conread position: 6-491
Cow position: chr5:31480752-31481238 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 321
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 138, 45

Conread position: 6-491
Cow position: chr5:35207860-35208351 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 331
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 137, 37

Conread position: 6-491
Cow position: chr5:47704536-47704036 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 338
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 136, 35

Conread position: 6-492
Cow position: chr5:61839787-61840279 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 329
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 136, 56

Conread position: 6-492
Cow position: chr5:65593472-65593959 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 39

Conread position: 6-494
Cow position: chr5:72172629-72173120 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 53

Conread position: 6-495
Cow position: chr5:16508691-16509201 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 344
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 94, 56

Conread position: 6-510
Cow position: chr5:15598634-15598128 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 56

Conread position: 6-510
Cow position: chr5:39447935-39447425 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 340
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 136, 27

Conread position: 6-510
Cow position: chr5:61030636-61030108 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 397

Conread position: 6-511
Cow position: chr5:65887415-65886899 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 341
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 98, 43

Conread position: 6-522
Cow position: chr5:58855703-58856227 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 45

Conread position: 6-522
Cow position: chr5:65776798-65776259 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 353
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 152, 65

Conread position: 6-523
Cow position: chr5:72902148-72902674 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 355
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 78, 357

Conread position: 6-527
Cow position: chr5:36406768-36407281 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 347
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 106, 161

Conread position: 6-530
Cow position: chr5:29827652-29828179 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 45

Conread position: 6-530
Cow position: chr5:44752720-44752174 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 273

Conread position: 6-533
Cow position: chr5:50821387-50821919 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 353
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 136, 50

Conread position: 6-538
Cow position: chr5:9090406-9089887 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 352
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 204, 44

Conread position: 6-564
Cow position: chr5:57365474-57364935 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 152

Conread position: 6-566
Cow position: chr5:26094571-26093998 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 375
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 130, 45

Conread position: 6-566
Cow position: chr5:55756840-55756247 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 386
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 137, 35

Conread position: 6-569
Cow position: chr5:67932871-67932303 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 254

Conread position: 6-595
Cow position: chr5:48535403-48535991 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 41

Conread position: 6-599
Cow position: chr5:68082369-68081780 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 81

Conread position: 6-600
Cow position: chr5:14314122-14314737 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 50

Conread position: 6-600
Cow position: chr5:28946465-28945859 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 76

Conread position: 6-600
Cow position: chr5:29843905-29844482 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 50

Conread position: 6-600
Cow position: chr5:30302497-30303102 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 56

Conread position: 6-600
Cow position: chr5:41604205-41604825 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 60

Conread position: 6-600
Cow position: chr5:43923550-43922950 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 393
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 136, 50

Conread position: 6-600
Cow position: chr5:44848415-44847806 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 37

Conread position: 6-600
Cow position: chr5:46611496-46610896 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 161

Conread position: 6-600
Cow position: chr5:58748361-58748969 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 121

Conread position: 6-600
Cow position: chr5:65933334-65932759 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 394
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 56, 33

Conread position: 6-601
Cow position: chr5:16894170-16893556 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 56

Conread position: 6-601
Cow position: chr5:48574179-48573578 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 8

Conread position: 7-382
Cow position: chr5:27690466-27690076 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 79

Conread position: 7-491
Cow position: chr5:360342-359849 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 326
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 132, 37

Conread position: 7-492
Cow position: chr5:31469974-31469502 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 325
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 138, 43

Conread position: 7-601
Cow position: chr5:18276086-18276680 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 44

Conread position: 8-595
Cow position: chr5:41334208-41334806 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 94

Conread position: 9-492
Cow position: chr5:21617067-21617549 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 324
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 18

Conread position: 10-317
Cow position: chr5:11954694-11954386 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 209
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 60, 49

Conread position: 10-390
Cow position: chr5:10248325-10248689 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 265
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 131, 32

Conread position: 10-510
Cow position: chr5:15088788-15089287 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 328
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 134, 44

Conread position: 10-510
Cow position: chr5:64524278-64523753 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 340
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 132, 45

Conread position: 10-562
Cow position: chr5:16206539-16205991 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 374
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 132, 36

Conread position: 10-602
Cow position: chr5:17027696-17028298 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 41

Conread position: 11-285
Cow position: chr5:55684728-55685013 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 134, 49

Conread position: 11-315
Cow position: chr5:50573361-50573673 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 131, 40

Conread position: 11-579
Cow position: chr5:21828460-21829045 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 383
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 131, 32

Conread position: 12-376
Cow position: chr5:38818886-38818519 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 247
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 58, 27

Conread position: 12-392
Cow position: chr5:6986763-6987156 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 50

Conread position: 12-397
Cow position: chr5:39710446-39710840 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 289
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 50, 101

Conread position: 13-279
Cow position: chr5:60968047-60968312 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 98, 46

Conread position: 14-600
Cow position: chr5:27615101-27615714 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 280

Conread position: 21-450
Cow position: chr5:66832078-66831661 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 123

Conread position: 22-400
Cow position: chr5:1398480-1398078 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 278
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 123, 395

Conread position: 22-600
Cow position: chr5:27007504-27008096 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 352

Conread position: 23-474
Cow position: chr5:45941007-45940536 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 242

Conread position: 28-397
Cow position: chr5:44583493-44583130 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 261
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 54, 15

Conread position: 35-568
Cow position: chr5:30978007-30978523 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 167

Conread position: 36-535
Cow position: chr5:6896501-6895989 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 104

Conread position: 45-593
Cow position: chr5:34442161-34441586 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 229

Conread position: 46-394
Cow position: chr5:34678528-34678888 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 243
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 94, 149

Conread position: 47-376
Cow position: chr5:11639155-11639500 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 231
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 95, 23

Conread position: 47-379
Cow position: chr5:58004879-58005231 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 229
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 95, 78

Conread position: 50-388
Cow position: chr5:30816352-30816708 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 242
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 92, 264

Conread position: 50-443
Cow position: chr5:26561781-26562200 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 281
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 95, 309

Conread position: 50-491
Cow position: chr5:37190456-37190007 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 293
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 7, 11

Conread position: 50-491
Cow position: chr5:47317331-47316884 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 295
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 89, 227

Conread position: 50-510
Cow position: chr5:52165542-52165069 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 287

Conread position: 50-535
Cow position: chr5:29771155-29771666 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 333
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 91, 308

Conread position: 51-279
Cow position: chr5:60015561-60015799 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 91, 7

Conread position: 51-568
Cow position: chr5:72564397-72564938 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 339
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 89, 288

Conread position: 51-600
Cow position: chr5:57935473-57934899 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 378
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 91, 13

Conread position: 52-346
Cow position: chr5:1105222-1104918 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 111

Conread position: 52-600
Cow position: chr5:40711813-40711245 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 230

Conread position: 53-288
Cow position: chr5:24539305-24539060 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 89, 18

Conread position: 57-595
Cow position: chr5:30332580-30333147 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 64

Conread position: 58-592
Cow position: chr5:40233778-40234305 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 12

Conread position: 60-416
Cow position: chr5:34288821-34288455 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 250
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 25, 191

Conread position: 60-600
Cow position: chr5:30276342-30276908 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 341

Conread position: 66-393
Cow position: chr5:19470530-19470198 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 231
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 76, 269

Conread position: 66-489
Cow position: chr5:58793961-58793519 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 288
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 76, 55

Conread position: 66-490
Cow position: chr5:32153663-32153230 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 285
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 76, 284

Conread position: 66-491
Cow position: chr5:38853012-38853439 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 297
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 76, 312

Conread position: 66-504
Cow position: chr5:39094207-39094654 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 303
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 76, 29

Conread position: 66-510
Cow position: chr5:32697144-32696713 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 295
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 76, 100

Conread position: 66-510
Cow position: chr5:38805691-38805235 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 233

Conread position: 66-537
Cow position: chr5:34887545-34887055 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 319
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 76, 224

Conread position: 69-491
Cow position: chr5:42845944-42845503 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 281
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 73, 209

Conread position: 70-411
Cow position: chr5:52040653-52040303 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 224
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 88, 120

Conread position: 70-488
Cow position: chr5:17631216-17630793 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 306
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 69, 255

Conread position: 70-510
Cow position: chr5:35209815-35209367 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 340

Conread position: 70-600
Cow position: chr5:28927940-28927402 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 361
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 74, 274

Conread position: 72-549
Cow position: chr5:34183877-34184374 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 59

Conread position: 73-591
Cow position: chr5:45226168-45225608 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 372
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 72, 10

Conread position: 74-510
Cow position: chr5:52645419-52644970 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 303
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 68, 210

Conread position: 74-520
Cow position: chr5:23647348-23646893 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 312
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 205

Conread position: 75-393
Cow position: chr5:60519837-60520155 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 221
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 67, 89

Conread position: 77-528
Cow position: chr5:64759072-64758636 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 317
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 230, 65

Conread position: 80-602
Cow position: chr5:23535840-23536379 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 74

Conread position: 81-454
Cow position: chr5:43330025-43329631 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 268
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 61, 220

Conread position: 81-591
Cow position: chr5:26990066-26990594 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 357
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 80, 56

Conread position: 88-600
Cow position: chr5:27103116-27102592 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 47

Conread position: 89-393
Cow position: chr5:42747838-42748151 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 209
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 51, 80

Conread position: 89-598
Cow position: chr5:39695331-39695851 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 49

Conread position: 89-598
Cow position: chr5:41599022-41598512 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 49

Conread position: 95-420
Cow position: chr5:41229393-41229727 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 232
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 41, 178

Conread position: 95-605
Cow position: chr5:24175053-24175577 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 238

Conread position: 100-503
Cow position: chr5:65941565-65941147 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 262
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 42, 35

Conread position: 105-495
Cow position: chr5:5111385-5110979 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 267
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 37, 233

Conread position: 107-574
Cow position: chr5:14153842-14154323 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 10

Conread position: 122-567
Cow position: chr5:18113864-18113401 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 226

Conread position: 124-417
Cow position: chr5:9860002-9859697 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 34, 212

Conread position: 127-510
Cow position: chr5:22934737-22934346 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 10

Conread position: 132-594
Cow position: chr5:41636598-41637058 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 139-399
Cow position: chr5:9083063-9083341 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 26, 210

Conread position: 139-442
Cow position: chr5:21357290-21356984 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 31, 139

Conread position: 139-600
Cow position: chr5:27419992-27419527 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 325
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 17, 57

Conread position: 140-535
Cow position: chr5:61488378-61487974 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 272

Conread position: 141-491
Cow position: chr5:65601194-65601547 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 237
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 132

Conread position: 142-603
Cow position: chr5:23367028-23366564 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 12

Conread position: 143-600
Cow position: chr5:328446-328001 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 304
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 72, 195

Conread position: 146-528
Cow position: chr5:27306060-27306435 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 261
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 32, 18

Conread position: 146-602
Cow position: chr5:41164827-41165304 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 315
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 17, 27

Conread position: 148-530
Cow position: chr5:51999961-52000351 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 266
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 16

Conread position: 150-592
Cow position: chr5:51502754-51503197 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 147

Conread position: 154-382
Cow position: chr5:56753473-56753711 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 115

Conread position: 156-438
Cow position: chr5:65924952-65924652 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 9, 103

Conread position: 159-419
Cow position: chr5:1276725-1276444 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 5

Conread position: 159-593
Cow position: chr5:1344105-1343662 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 5

Conread position: 161-459
Cow position: chr5:32956336-32956036 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 201
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 52, 41

Conread position: 161-534
Cow position: chr5:33265675-33265330 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 257
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 253, 59

Conread position: 165-535
Cow position: chr5:17869473-17869823 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 41

Conread position: 166-600
Cow position: chr5:25919855-25919434 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 103

Conread position: 166-600
Cow position: chr5:50900667-50901120 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 318
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 35, 91

Conread position: 169-469
Cow position: chr5:32975789-32975486 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 201
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 34, 119

Conread position: 169-533
Cow position: chr5:26046096-26046458 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 253
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 29, 103

Conread position: 169-604
Cow position: chr5:46798014-46798449 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 103

Conread position: 169-605
Cow position: chr5:64398764-64399215 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 253

Conread position: 170-524
Cow position: chr5:22839710-22839350 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 81

Conread position: 171-600
Cow position: chr5:48144027-48143569 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 275

Conread position: 173-600
Cow position: chr5:16025692-16025262 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 280
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 192

Conread position: 174-526
Cow position: chr5:55989508-55989869 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 249
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 93

Conread position: 174-535
Cow position: chr5:4032222-4031848 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 240
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 64, 41

Conread position: 174-566
Cow position: chr5:54350594-54350184 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 264
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 40, 48

Conread position: 174-585
Cow position: chr5:15426295-15426728 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 277
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 36, 366

Conread position: 174-601
Cow position: chr5:56384994-56385415 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 221

Conread position: 180-400
Cow position: chr5:33467268-33467042 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 88

Conread position: 180-447
Cow position: chr5:37714132-37713848 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 30, 0

Conread position: 180-600
Cow position: chr5:40928200-40927793 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 290
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 30, 84

Conread position: 180-600
Cow position: chr5:55088918-55089343 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 87

Conread position: 180-600
Cow position: chr5:71454823-71454410 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 291
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 21, 94

Conread position: 182-603
Cow position: chr5:25900089-25899672 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 83

Conread position: 183-574
Cow position: chr5:27411614-27411225 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 143

Conread position: 195-535
Cow position: chr5:24361329-24361651 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 92, 64

Conread position: 195-600
Cow position: chr5:26262879-26262464 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 286
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 17, 45

Conread position: 197-491
Cow position: chr5:17063296-17062991 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 201
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 92, 52

Conread position: 197-535
Cow position: chr5:50215761-50215426 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 223
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 101, 27

Conread position: 197-594
Cow position: chr5:40039973-40039574 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 268
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 133, 125

Conread position: 199-535
Cow position: chr5:35969342-35969670 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 230
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 99, 64

Conread position: 199-566
Cow position: chr5:11427442-11427067 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 244
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 88, 188

Conread position: 200-510
Cow position: chr5:37646750-37646434 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 197
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 200-530
Cow position: chr5:62142471-62142809 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 224
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 87, 65

Conread position: 200-586
Cow position: chr5:18898784-18899164 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 264
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 134, 73

Conread position: 205-511
Cow position: chr5:5257491-5257177 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 209
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 59, 107

Conread position: 206-402
Cow position: chr5:62027140-62026946 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 112, 59

Conread position: 206-414
Cow position: chr5:9234274-9234060 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 206-511
Cow position: chr5:37425549-37425854 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 201
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 123, 77

Conread position: 206-533
Cow position: chr5:12803302-12803643 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 235
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 81, 293

Conread position: 206-588
Cow position: chr5:31660834-31660471 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 179, 82

Conread position: 206-599
Cow position: chr5:50425671-50425287 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 268
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 81, 69

Conread position: 206-600
Cow position: chr5:3649654-3649262 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 46

Conread position: 206-600
Cow position: chr5:39442100-39442498 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 151

Conread position: 206-600
Cow position: chr5:48757751-48758142 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 35

Conread position: 206-600
Cow position: chr5:69773378-69773744 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 119, 57

Conread position: 206-601
Cow position: chr5:58320655-58320268 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 55

Conread position: 206-603
Cow position: chr5:29756144-29756540 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 121

Conread position: 211-536
Cow position: chr5:4220792-4221117 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 212
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 178

Conread position: 212-600
Cow position: chr5:31561348-31561726 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 44

Conread position: 213-545
Cow position: chr5:1688299-1687968 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 112, 84

Conread position: 214-605
Cow position: chr5:62638720-62639111 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 45

Conread position: 217-601
Cow position: chr5:1950244-1949856 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 70

Conread position: 221-587
Cow position: chr5:7552597-7552232 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 260
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 102, 65

Conread position: 223-402
Cow position: chr5:59356808-59356994 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 225-535
Cow position: chr5:32282156-32282471 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 215
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 62, 181

Conread position: 227-419
Cow position: chr5:53146059-53145865 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 61, 97

Conread position: 227-474
Cow position: chr5:29980158-29979909 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 49

Conread position: 227-510
Cow position: chr5:51935010-51935299 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 63, 105

Conread position: 227-510
Cow position: chr5:55928770-55929054 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 60, 38

Conread position: 227-556
Cow position: chr5:36486313-36486642 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 179

Conread position: 239-600
Cow position: chr5:23529437-23529081 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 56

Conread position: 239-605
Cow position: chr5:16214527-16214907 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 59, 24

Conread position: 240-482
Cow position: chr5:34167801-34168044 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 166
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 51, 23

Conread position: 240-520
Cow position: chr5:54111759-54112036 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 44, 136

Conread position: 240-555
Cow position: chr5:73526218-73526523 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 49, 5

Conread position: 241-568
Cow position: chr5:3752707-3753020 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 267, 22

Conread position: 241-593
Cow position: chr5:54089880-54090231 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 85

Conread position: 241-600
Cow position: chr5:38629129-38629488 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 255
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 48, 8

Conread position: 242-600
Cow position: chr5:37068734-37069083 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 48, 75

Conread position: 251-586
Cow position: chr5:30950068-30949727 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 222
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 33, 75

Conread position: 252-535
Cow position: chr5:43992173-43992462 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 192
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 31, 22

Conread position: 252-599
Cow position: chr5:55955758-55956130 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 253
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 35, 83

Conread position: 255-593
Cow position: chr5:39874977-39875319 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 242
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 32, 122

Conread position: 257-487
Cow position: chr5:39182057-39181830 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 32, 100

Conread position: 258-600
Cow position: chr5:48405319-48404994 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 248
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 68, 29

Conread position: 259-600
Cow position: chr5:40388015-40387680 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 77

Conread position: 266-592
Cow position: chr5:73556323-73556007 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 239
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 56

Conread position: 271-586
Cow position: chr5:41713175-41713495 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 143, 12

Conread position: 285-594
Cow position: chr5:49474660-49474339 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 76, 38

Conread position: 286-535
Cow position: chr5:37808790-37808525 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 96

Conread position: 286-535
Cow position: chr5:54768024-54767771 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 173
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 38

Conread position: 286-599
Cow position: chr5:16179639-16179303 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 229
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 45, 29

Conread position: 287-599
Cow position: chr5:47681115-47680816 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 35

Conread position: 288-592
Cow position: chr5:6891130-6890829 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 46, 125

Conread position: 290-539
Cow position: chr5:23678814-23678561 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 40, 120

Conread position: 292-521
Cow position: chr5:21535222-21534987 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 7

Conread position: 292-600
Cow position: chr5:49567322-49567623 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 33, 78

Conread position: 293-544
Cow position: chr5:35125947-35126201 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 37, 7

Conread position: 295-593
Cow position: chr5:4927672-4927363 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 105

Conread position: 308-568
Cow position: chr5:60747370-60747118 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 22

Conread position: 308-594
Cow position: chr5:63188416-63188135 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 204
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 106, 145

Conread position: 308-600
Cow position: chr5:50575693-50575989 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 197
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 15

Conread position: 310-579
Cow position: chr5:59449662-59449394 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 105, 230

Conread position: 310-588
Cow position: chr5:18553809-18554080 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 312-589
Cow position: chr5:17267983-17267703 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 234

Conread position: 315-600
Cow position: chr5:57381457-57381747 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 220
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 164, 78

Conread position: 316-594
Cow position: chr5:18128017-18128281 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 18, 93

Conread position: 324-593
Cow position: chr5:56799335-56799078 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 169, 30

Conread position: 324-594
Cow position: chr5:18695103-18695351 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 163, 74

Conread position: 324-599
Cow position: chr5:49945837-49946106 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 47

Conread position: 324-600
Cow position: chr5:42782795-42782527 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 10, 46

Conread position: 327-541
Cow position: chr5:65044137-65043930 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 181, 63

Conread position: 328-600
Cow position: chr5:15482971-15483237 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 162, 26

Conread position: 328-602
Cow position: chr5:28035670-28035946 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 95, 69

Conread position: 333-575
Cow position: chr5:41294015-41294262 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 160, 70

Conread position: 334-594
Cow position: chr5:38738734-38738978 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 160, 53

Conread position: 336-594
Cow position: chr5:47836483-47836745 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 79, 60

Conread position: 336-599
Cow position: chr5:66189924-66190185 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 48

Conread position: 337-587
Cow position: chr5:41945786-41946036 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 78, 110

Conread position: 340-593
Cow position: chr5:67150070-67149823 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 91, 66

Conread position: 340-600
Cow position: chr5:45396467-45396211 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 75, 16

Conread position: 350-600
Cow position: chr5:34279650-34279411 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 158, 53

Conread position: 353-600
Cow position: chr5:34914602-34914355 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 9, 193

Conread position: 361-594
Cow position: chr5:21195152-21194927 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 147, 48

Conread position: 362-600
Cow position: chr5:36487733-36487493 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 146, 48

Conread position: 364-569
Cow position: chr5:49656057-49655857 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 55, 37

Conread position: 364-605
Cow position: chr5:48178422-48178175 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 114, 42

Conread position: 379-600
Cow position: chr5:25681371-25681159 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 38, 61

Conread position: 381-574
Cow position: chr5:6987433-6987626 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 127, 14

Conread position: 384-600
Cow position: chr5:58343841-58344060 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 36, 160

Conread position: 394-574
Cow position: chr5:21531112-21530929 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 97, 150

Conread position: 394-605
Cow position: chr5:15837897-15837688 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 91

Conread position: 396-600
Cow position: chr5:75687335-75687129 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 150

Conread position: 398-600
Cow position: chr5:1349797-1349591 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 6, 148

Conread position: 398-605
Cow position: chr5:63328895-63328693 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 38

Conread position: 410-600
Cow position: chr5:42316899-42316713 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 98, 21

Conread position: 414-600
Cow position: chr5:23527618-23527428 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 79, 131

Conread position: 424-561
Cow position: chr5:61365555-61365694 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 68, 12

Conread position: 424-600
Cow position: chr5:36028121-36027946 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 84, 54

Conread position: 424-600
Cow position: chr5:53145729-53145546 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 117

Conread position: 426-573
Cow position: chr5:7433134-7432984 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 84, 44

Conread position: 427-599
Cow position: chr5:38936559-38936394 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 427-600
Cow position: chr5:50859892-50860065 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 69, 54

Conread position: 429-600
Cow position: chr5:21356857-21356690 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 79, 30

Conread position: 432-592
Cow position: chr5:70169667-70169516 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 433-567
Cow position: chr5:33341104-33340969 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 79, 110

Conread position: 433-567
Cow position: chr5:33342832-33342697 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 79, 110

Conread position: 443-599
Cow position: chr5:27293627-27293469 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 69, 106

Conread position: 446-599
Cow position: chr5:37272440-37272590 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 126
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 96, 0

Conread position: 447-572
Cow position: chr5:72363969-72363846 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 448-601
Cow position: chr5:34906122-34906272 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 31, 62

Conread position: 451-600
Cow position: chr5:39753605-39753455 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 10, 93

Conread position: 453-600
Cow position: chr5:3058971-3059119 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 5, 91

Conread position: 453-600
Cow position: chr5:5929511-5929661 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 40, 92

Conread position: 458-600
Cow position: chr5:39134203-39134058 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 35, 87

Conread position: 461-600
Cow position: chr5:55411981-55411842 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 16, 7

Show alignments to all cow chromosomes.