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Cow genome map

           
Conread name:
           
Emb1-C0005192_I11
        

               
Conread position:
               
2-214
               

               
Cow position:
               
chr1:5751309-5751531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
7, 119
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr1:11489148-11488942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
8, 33
               

               
Conread position:
               
5-193
               

               
Cow position:
               
chr1:23633918-23633733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chr1:18936834-18936624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:47967009-47966803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
6-216
               

               
Cow position:
               
chr1:852171-852392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
7-196
               

               
Cow position:
               
chr1:96558847-96558649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
34, 113
               

               
Conread position:
               
7-203
               

               
Cow position:
               
chr1:73551508-73551298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
7-211
               

               
Cow position:
               
chr1:26895809-26895599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
31, 119
               

               
Conread position:
               
7-214
               

               
Cow position:
               
chr1:99642365-99642159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr1:4691597-4691806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr1:97794545-97794329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chr1:79630900-79630698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
8-166
               

               
Cow position:
               
chr1:186271-186105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
8-184
               

               
Cow position:
               
chr1:43311769-43311583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
8-187
               

               
Cow position:
               
chr1:11729178-11729359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 124
               

               
Conread position:
               
8-192
               

               
Cow position:
               
chr1:99629180-99629355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
8-200
               

               
Cow position:
               
chr1:49980713-49980909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
8-200
               

               
Cow position:
               
chr1:73721363-73721565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 136
               

               
Conread position:
               
8-203
               

               
Cow position:
               
chr1:65638917-65639127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 102
               

               
Conread position:
               
8-204
               

               
Cow position:
               
chr1:242560-242757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
8-204
               

               
Cow position:
               
chr1:8287627-8287424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
8-204
               

               
Cow position:
               
chr1:31819114-31819308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
8-204
               

               
Cow position:
               
chr1:88359881-88360090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
8-204
               

               
Cow position:
               
chr1:102768184-102768380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 120
               

               
Conread position:
               
8-209
               

               
Cow position:
               
chr1:31795002-31794798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
51, 108
               

               
Conread position:
               
8-210
               

               
Cow position:
               
chr1:43340610-43340420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
193, 48
               

               
Conread position:
               
8-210
               

               
Cow position:
               
chr1:53370088-53370295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr1:6381775-6381986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr1:42868933-42868738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 112
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr1:48444191-48443978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 132
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr1:59518925-59519123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr1:65103624-65103842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr1:78781981-78782199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:3130529-3130333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
190, 25
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:22823908-22824122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 121
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:49334389-49334179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:72068832-72068614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 122
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:72422405-72422193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:82337773-82337568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
48, 120
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:89437711-89437515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:95835795-95835582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:100400190-100399994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:101280731-101280523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr1:6790778-6790988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
14, 117
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr1:32014201-32014401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr1:21954218-21954012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr1:53374436-53374643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 117
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr1:60044991-60045202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
8-215
               

               
Cow position:
               
chr1:14106615-14106392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 184
               

               
Conread position:
               
8-215
               

               
Cow position:
               
chr1:26201239-26201451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
8-215
               

               
Cow position:
               
chr1:95829116-95828919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
8-216
               

               
Cow position:
               
chr1:54258570-54258788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
8-216
               

               
Cow position:
               
chr1:74084185-74083968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 108
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:28563563-28563346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 205
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:47790659-47790449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 119
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:81390925-81391143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 79
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:86110734-86110527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 99
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:101177518-101177741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
8-218
               

               
Cow position:
               
chr1:22035614-22035827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
8-218
               

               
Cow position:
               
chr1:24777986-24777763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 67
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr1:86340461-86340229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
8-231
               

               
Cow position:
               
chr1:22730737-22730967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
28, 110
               

               
Conread position:
               
9-154
               

               
Cow position:
               
chr1:32001309-32001167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 121
               

               
Conread position:
               
9-189
               

               
Cow position:
               
chr1:22394658-22394483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
9-200
               

               
Cow position:
               
chr1:95049860-95049664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr1:4294348-4294557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 107
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr1:16767080-16766874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 105
               

               
Conread position:
               
10-184
               

               
Cow position:
               
chr1:31630282-31630098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 129
               

               
Conread position:
               
10-204
               

               
Cow position:
               
chr1:33080794-33080606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 39
               

               
Conread position:
               
10-211
               

               
Cow position:
               
chr1:43352649-43352439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
10-214
               

               
Cow position:
               
chr1:61146124-61146332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
6, 106
               

               
Conread position:
               
10-216
               

               
Cow position:
               
chr1:87149810-87149599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
12-157
               

               
Cow position:
               
chr1:67539578-67539720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
12-209
               

               
Cow position:
               
chr1:71664887-71664684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 114
               

               
Conread position:
               
12-210
               

               
Cow position:
               
chr1:14567628-14567431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
13-215
               

               
Cow position:
               
chr1:12090358-12090565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
14-188
               

               
Cow position:
               
chr1:2975973-2975800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
14-209
               

               
Cow position:
               
chr1:83677303-83677115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
14-210
               

               
Cow position:
               
chr1:29474326-29474141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
14-215
               

               
Cow position:
               
chr1:3244232-3244430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
14-215
               

               
Cow position:
               
chr1:42482213-42482416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
15-202
               

               
Cow position:
               
chr1:68710300-68710487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
15-204
               

               
Cow position:
               
chr1:34771481-34771293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
110, 12
               

               
Conread position:
               
15-204
               

               
Cow position:
               
chr1:37918167-37917974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
15-204
               

               
Cow position:
               
chr1:63992314-63992129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
32, 39
               

               
Conread position:
               
15-207
               

               
Cow position:
               
chr1:49297673-49297859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
15-207
               

               
Cow position:
               
chr1:81858879-81858693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
15-209
               

               
Cow position:
               
chr1:15628304-15628489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
15-211
               

               
Cow position:
               
chr1:46245727-46245524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
13, 68
               

               
Conread position:
               
15-214
               

               
Cow position:
               
chr1:37726398-37726199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 12
               

               
Conread position:
               
15-215
               

               
Cow position:
               
chr1:97231982-97232187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
101, 13
               

               
Conread position:
               
15-218
               

               
Cow position:
               
chr1:95703827-95704023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
15-239
               

               
Cow position:
               
chr1:21577831-21578050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
154, 12
               

               
Conread position:
               
16-192
               

               
Cow position:
               
chr1:2971939-2972113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
16-215
               

               
Cow position:
               
chr1:64804079-64803880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
187, 11
               

               
Conread position:
               
17-213
               

               
Cow position:
               
chr1:83222007-83222202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
17-216
               

               
Cow position:
               
chr1:61846168-61846377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
103, 10
               

               
Conread position:
               
22-209
               

               
Cow position:
               
chr1:41022440-41022626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:86057034-86056877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
35-212
               

               
Cow position:
               
chr1:82336712-82336884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
36-217
               

               
Cow position:
               
chr1:50765653-50765834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:20125829-20125996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
38-212
               

               
Cow position:
               
chr1:30862372-30862200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
87, 68
               

               
Conread position:
               
38-216
               

               
Cow position:
               
chr1:22147265-22147434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
39-205
               

               
Cow position:
               
chr1:716542-716379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 31
               

               
Conread position:
               
44-205
               

               
Cow position:
               
chr1:50906630-50906475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
46-211
               

               
Cow position:
               
chr1:73398022-73397859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
49-225
               

               
Cow position:
               
chr1:1915972-1915797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
157, 44
               

               
Conread position:
               
50-204
               

               
Cow position:
               
chr1:20202359-20202505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
50-211
               

               
Cow position:
               
chr1:36079880-36080039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
51-195
               

               
Cow position:
               
chr1:67743679-67743542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
51-217
               

               
Cow position:
               
chr1:10716553-10716723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
52-219
               

               
Cow position:
               
chr1:83246483-83246648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
52-259
               

               
Cow position:
               
chr1:6873869-6874079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
150, 57
               

               
Conread position:
               
53-167
               

               
Cow position:
               
chr1:54645486-54645600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 80
               

               
Conread position:
               
53-169
               

               
Cow position:
               
chr1:48581188-48581300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
53-176
               

               
Cow position:
               
chr1:70146852-70146731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-184
               

               
Cow position:
               
chr1:1802226-1802355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-184
               

               
Cow position:
               
chr1:69691656-69691527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-186
               

               
Cow position:
               
chr1:34731103-34731234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-187
               

               
Cow position:
               
chr1:23372918-23373049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
53-189
               

               
Cow position:
               
chr1:21093176-21093309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
53-189
               

               
Cow position:
               
chr1:21573599-21573732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
53-189
               

               
Cow position:
               
chr1:25955954-25956086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-192
               

               
Cow position:
               
chr1:1799089-1799225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
53-192
               

               
Cow position:
               
chr1:34856569-34856432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-192
               

               
Cow position:
               
chr1:40181565-40181428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-192
               

               
Cow position:
               
chr1:61134471-61134608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
53-192
               

               
Cow position:
               
chr1:78793943-78793810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-192
               

               
Cow position:
               
chr1:81668758-81668619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
53-193
               

               
Cow position:
               
chr1:49082802-49082940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-193
               

               
Cow position:
               
chr1:77404851-77404709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
53-193
               

               
Cow position:
               
chr1:78034845-78034711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
53-193
               

               
Cow position:
               
chr1:88618655-88618801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 111
               

               
Conread position:
               
53-195
               

               
Cow position:
               
chr1:3154975-3154833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
53-195
               

               
Cow position:
               
chr1:98467857-98467998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
53-199
               

               
Cow position:
               
chr1:63212200-63212059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
53-200
               

               
Cow position:
               
chr1:759359-759211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
53-200
               

               
Cow position:
               
chr1:2075292-2075149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
53-200
               

               
Cow position:
               
chr1:46939826-46939676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
53-200
               

               
Cow position:
               
chr1:62519422-62519567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-200
               

               
Cow position:
               
chr1:81466909-81466763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
53-200
               

               
Cow position:
               
chr1:95558096-95558240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-201
               

               
Cow position:
               
chr1:78784845-78784699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
53-201
               

               
Cow position:
               
chr1:96201257-96201113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
53-202
               

               
Cow position:
               
chr1:57089620-57089476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
53-202
               

               
Cow position:
               
chr1:78029973-78029823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-202
               

               
Cow position:
               
chr1:100474293-100474442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
53-203
               

               
Cow position:
               
chr1:13157250-13157398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
53-203
               

               
Cow position:
               
chr1:69911162-69911316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
53-203
               

               
Cow position:
               
chr1:76518481-76518629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr1:874713-874868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
102, 56
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr1:5872720-5872569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr1:7229627-7229480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr1:19599302-19599155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr1:25383727-25383874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr1:72034865-72034723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr1:89872025-89872173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr1:90820419-90820275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr1:96518752-96518907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr1:102648337-102648485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr1:4573782-4573934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
138, 49
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr1:7965905-7966053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr1:45315577-45315425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr1:48214099-48213939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr1:71946025-71945874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr1:73375043-73374890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr1:78801920-78801769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
147, 67
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr1:80423673-80423526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 47
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr1:84811880-84811735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr1:90621446-90621300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-206
               

               
Cow position:
               
chr1:34001106-34001250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
53-206
               

               
Cow position:
               
chr1:49759600-49759751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-206
               

               
Cow position:
               
chr1:90879677-90879534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:11107303-11107455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:26984068-26984220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:42592227-42592076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
143, 13
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:58420260-58420406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:66138377-66138530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 56
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:67674544-67674400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:71350668-71350516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:74919920-74919767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:86503305-86503152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:98380238-98380087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr1:102266209-102266062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-208
               

               
Cow position:
               
chr1:56719399-56719549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
53-208
               

               
Cow position:
               
chr1:87888444-87888599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:484408-484253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:4701615-4701461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:14006181-14006335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:17875651-17875503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:21955314-21955162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:31765024-31764870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:45579586-45579431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:48695490-48695338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:65318634-65318787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:73534582-73534432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr1:80385428-80385276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr1:10942035-10941887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr1:30035282-30035435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr1:38277969-38277815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr1:55357236-55357080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 145
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr1:71228151-71228306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr1:76739851-76739703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr1:84594947-84595102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr1:96019287-96019441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr1:100823096-100823251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr1:3666972-3666820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 65
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr1:4391212-4391056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr1:23050491-23050647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr1:31274931-31274773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
149, 67
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr1:46031019-46031174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
150, 50
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr1:59551496-59551651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr1:85622588-85622745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
149, 56
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr1:92188016-92188171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr1:95152930-95153086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr1:100800709-100800557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:150866-150711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:1380056-1380214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
116, 57
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:4582609-4582763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:9637088-9637243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:20537264-20537415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:23186740-23186587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
147, 67
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:38419082-38419240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
144, 118
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:42796936-42797089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:52496829-52496981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:54569757-54569914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:55428897-55428740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:57395448-57395292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:72105465-72105613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:84104002-84103845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:86113341-86113185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:96304910-96304761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:7306027-7306178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:10523759-10523913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:22231707-22231865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:22461179-22461024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
138, 57
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:22828511-22828357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
147, 67
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:24133004-24132849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:36887268-36887115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 56
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:53402840-53402999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
150, 67
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:62997855-62998016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:69176693-69176523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:70422363-70422516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:76037457-76037298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
69, 49
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:77685922-77685763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
153, 65
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:81515292-81515453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:81568969-81568811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:90192475-90192636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
153, 56
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:91066093-91065943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:94823333-94823175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr1:95618701-95618855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:8674-8834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
143, 57
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:3535129-3535285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
150, 45
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:25734926-25735083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:30983438-30983279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:36625574-36625733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:45099819-45099973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
138, 56
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:52139569-52139412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:54156676-54156519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:56913470-56913317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:75250169-75250327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:77739781-77739939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:77986360-77986201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:79718866-79719023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:81364319-81364480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
147, 65
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:83972822-83972979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:89146816-89146656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
149, 67
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr1:91649359-91649200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:500234-500392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:1496473-1496311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 69
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:4444783-4444622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:6102844-6102684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:6394616-6394773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:6398460-6398292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:6590092-6590253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:7748272-7748432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:7752438-7752596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:12222548-12222388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:16961951-16961778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:20871500-20871340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:21561071-21561237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:22628591-22628440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:33206821-33206657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:37695843-37695687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:38706795-38706637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:46004340-46004490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:47468022-47467862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:47658404-47658565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
149, 56
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:53394133-53394292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:55260177-55260018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:57053262-57053420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:69442459-69442297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
148, 67
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:70416701-70416544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:71790089-71789932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:73545852-73545691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
149, 65
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:79631477-79631322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:89076574-89076406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
67, 125
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:98415646-98415809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr1:100512954-100513113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
53-216
               

               
Cow position:
               
chr1:628025-628185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-216
               

               
Cow position:
               
chr1:7443035-7443200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 56
               

               
Conread position:
               
53-216
               

               
Cow position:
               
chr1:17056050-17056207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 42
               

               
Conread position:
               
53-216
               

               
Cow position:
               
chr1:39684085-39683922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
143, 27
               

               
Conread position:
               
53-216
               

               
Cow position:
               
chr1:50853967-50854132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
53-216
               

               
Cow position:
               
chr1:74929652-74929491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:3151356-3151519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:5284173-5284005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:5479601-5479439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
153, 54
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:14759296-14759136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
158, 56
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:21681478-21681313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
158, 66
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:31340712-31340548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
128, 66
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:42175786-42175948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
150, 56
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:43296660-43296490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:52435331-52435496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
150, 67
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:61741909-61741746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:64887452-64887291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:66445021-66445174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:69411638-69411475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
150, 57
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:71119580-71119738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:76740618-76740452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:78857270-78857107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
157, 67
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr1:96964375-96964540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
149, 56
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr1:3271204-3271367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr1:16060945-16060789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr1:19515560-19515395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr1:25022016-25021858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
149, 67
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr1:30469840-30470003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr1:60403825-60403989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
150, 55
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr1:63994496-63994336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-219
               

               
Cow position:
               
chr1:63460937-63461096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
53-220
               

               
Cow position:
               
chr1:33720160-33720326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
143, 65
               

               
Conread position:
               
53-220
               

               
Cow position:
               
chr1:55230035-55230194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-220
               

               
Cow position:
               
chr1:79038171-79038336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
53-221
               

               
Cow position:
               
chr1:52384967-52385134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 87
               

               
Conread position:
               
53-222
               

               
Cow position:
               
chr1:50432425-50432255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
153, 49
               

               
Conread position:
               
53-222
               

               
Cow position:
               
chr1:69250493-69250654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
53-223
               

               
Cow position:
               
chr1:42256443-42256281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-223
               

               
Cow position:
               
chr1:48301392-48301226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
157, 68
               

               
Conread position:
               
53-223
               

               
Cow position:
               
chr1:65030126-65030294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-224
               

               
Cow position:
               
chr1:90267779-90267950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
149, 56
               

               
Conread position:
               
53-225
               

               
Cow position:
               
chr1:731914-731743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
62, 121
               

               
Conread position:
               
53-225
               

               
Cow position:
               
chr1:43379303-43379133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
149, 65
               

               
Conread position:
               
53-225
               

               
Cow position:
               
chr1:89298051-89297879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
53-225
               

               
Cow position:
               
chr1:89301660-89301488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
53-230
               

               
Cow position:
               
chr1:66898439-66898261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
53-230
               

               
Cow position:
               
chr1:88913378-88913556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
143, 75
               

               
Conread position:
               
53-233
               

               
Cow position:
               
chr1:4180895-4180716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
146, 56
               

               
Conread position:
               
53-233
               

               
Cow position:
               
chr1:36688319-36688146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
172, 37
               

               
Conread position:
               
53-236
               

               
Cow position:
               
chr1:4587819-4587632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
54-160
               

               
Cow position:
               
chr1:37543726-37543623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
54-192
               

               
Cow position:
               
chr1:72813676-72813810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
54-200
               

               
Cow position:
               
chr1:64458025-64458173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
54-203
               

               
Cow position:
               
chr1:51860501-51860360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
54-204
               

               
Cow position:
               
chr1:7452969-7453119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
54-204
               

               
Cow position:
               
chr1:15102943-15103089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
54-204
               

               
Cow position:
               
chr1:30028172-30028027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
54-204
               

               
Cow position:
               
chr1:92524074-92524221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
54-204
               

               
Cow position:
               
chr1:98422057-98422209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
54-204
               

               
Cow position:
               
chr1:98557059-98556913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
54-205
               

               
Cow position:
               
chr1:1489347-1489199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
54-205
               

               
Cow position:
               
chr1:3323931-3324080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
54-205
               

               
Cow position:
               
chr1:76613075-76612926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
54-206
               

               
Cow position:
               
chr1:22637363-22637218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
54-207
               

               
Cow position:
               
chr1:635625-635476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
54-207
               

               
Cow position:
               
chr1:4361997-4361844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
54-207
               

               
Cow position:
               
chr1:38753983-38754125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
54-207
               

               
Cow position:
               
chr1:89213293-89213142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
54-207
               

               
Cow position:
               
chr1:101267944-101267794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
54-208
               

               
Cow position:
               
chr1:47886420-47886273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
54-209
               

               
Cow position:
               
chr1:5010776-5010623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
54-209
               

               
Cow position:
               
chr1:7313628-7313475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
54-209
               

               
Cow position:
               
chr1:31846057-31846208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
54-209
               

               
Cow position:
               
chr1:61080557-61080710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
54-209
               

               
Cow position:
               
chr1:70227634-70227481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
54-209
               

               
Cow position:
               
chr1:71665872-71665724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
54-209
               

               
Cow position:
               
chr1:92792110-92792262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
54-210
               

               
Cow position:
               
chr1:40077854-40078001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
54-210
               

               
Cow position:
               
chr1:40303611-40303759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
54-211
               

               
Cow position:
               
chr1:47190935-47190781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
54-212
               

               
Cow position:
               
chr1:22448195-22448029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
72, 66
               

               
Conread position:
               
54-212
               

               
Cow position:
               
chr1:31801859-31801707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
54-212
               

               
Cow position:
               
chr1:74305022-74304866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
54-212
               

               
Cow position:
               
chr1:85688238-85688398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
54-212
               

               
Cow position:
               
chr1:87072756-87072907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
54-212
               

               
Cow position:
               
chr1:101866437-101866286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
137, 42
               

               
Conread position:
               
54-213
               

               
Cow position:
               
chr1:74751571-74751414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
54-213
               

               
Cow position:
               
chr1:102468557-102468408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
54-214
               

               
Cow position:
               
chr1:22943968-22943815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
54-214
               

               
Cow position:
               
chr1:87095154-87094996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
54-214
               

               
Cow position:
               
chr1:91651291-91651133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
54-214
               

               
Cow position:
               
chr1:93743899-93744061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
54-215
               

               
Cow position:
               
chr1:15875720-15875876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
149, 55
               

               
Conread position:
               
54-215
               

               
Cow position:
               
chr1:65160188-65160347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
149, 20
               

               
Conread position:
               
54-215
               

               
Cow position:
               
chr1:100152338-100152499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
54-215
               

               
Cow position:
               
chr1:102423853-102424014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 56
               

               
Conread position:
               
54-215
               

               
Cow position:
               
chr1:102797938-102797783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
140, 55
               

               
Conread position:
               
54-216
               

               
Cow position:
               
chr1:52509706-52509547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
54-216
               

               
Cow position:
               
chr1:76735421-76735261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 99
               

               
Conread position:
               
54-217
               

               
Cow position:
               
chr1:31806921-31807077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
160, 55
               

               
Conread position:
               
54-217
               

               
Cow position:
               
chr1:67529115-67529274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
54-217
               

               
Cow position:
               
chr1:82374733-82374901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
54-217
               

               
Cow position:
               
chr1:99609428-99609581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
54-217
               

               
Cow position:
               
chr1:99637194-99637033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
54-221
               

               
Cow position:
               
chr1:5858616-5858450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
145, 66
               

               
Conread position:
               
54-221
               

               
Cow position:
               
chr1:97540695-97540861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
54-222
               

               
Cow position:
               
chr1:196945-196779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
148, 48
               

               
Conread position:
               
54-224
               

               
Cow position:
               
chr1:1606076-1605908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
84, 67
               

               
Conread position:
               
54-231
               

               
Cow position:
               
chr1:11853628-11853456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
54-239
               

               
Cow position:
               
chr1:73458039-73457855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
55-209
               

               
Cow position:
               
chr1:70344101-70344255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 122
               

               
Conread position:
               
55-210
               

               
Cow position:
               
chr1:32217302-32217449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
55-210
               

               
Cow position:
               
chr1:33846508-33846359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
55-211
               

               
Cow position:
               
chr1:73020601-73020449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
148, 51
               

               
Conread position:
               
55-212
               

               
Cow position:
               
chr1:79178689-79178844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
55-212
               

               
Cow position:
               
chr1:94713104-94712950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
55-213
               

               
Cow position:
               
chr1:60603516-60603356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
55-214
               

               
Cow position:
               
chr1:6731241-6731394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
55-214
               

               
Cow position:
               
chr1:70483273-70483120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
55-215
               

               
Cow position:
               
chr1:1878081-1878239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
55-215
               

               
Cow position:
               
chr1:98897633-98897474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 122
               

               
Conread position:
               
55-217
               

               
Cow position:
               
chr1:81473216-81473379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
151, 54
               

               
Conread position:
               
55-217
               

               
Cow position:
               
chr1:82200306-82200147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
156, 115
               

               
Conread position:
               
55-218
               

               
Cow position:
               
chr1:63530619-63530774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
55-224
               

               
Cow position:
               
chr1:36018722-36018560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
56-189
               

               
Cow position:
               
chr1:54733419-54733295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
56-204
               

               
Cow position:
               
chr1:44814608-44814459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 141
               

               
Conread position:
               
56-207
               

               
Cow position:
               
chr1:41953940-41953791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
56-212
               

               
Cow position:
               
chr1:9040252-9040092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
56-212
               

               
Cow position:
               
chr1:29329603-29329761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 63
               

               
Conread position:
               
56-214
               

               
Cow position:
               
chr1:71321938-71321788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
56-216
               

               
Cow position:
               
chr1:64421603-64421753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
57-189
               

               
Cow position:
               
chr1:95809612-95809745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
57-192
               

               
Cow position:
               
chr1:84815193-84815328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
57-204
               

               
Cow position:
               
chr1:97986386-97986239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
119, 52
               

               
Conread position:
               
57-215
               

               
Cow position:
               
chr1:46795819-46795973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
138, 52
               

               
Conread position:
               
58-204
               

               
Cow position:
               
chr1:95966416-95966270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
58-215
               

               
Cow position:
               
chr1:51626725-51626580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
58-216
               

               
Cow position:
               
chr1:64705963-64706119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
59-202
               

               
Cow position:
               
chr1:8133988-8134128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
59-215
               

               
Cow position:
               
chr1:5431127-5431280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
59-216
               

               
Cow position:
               
chr1:76222657-76222506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
60-200
               

               
Cow position:
               
chr1:20950779-20950918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
7, 47
               

               
Conread position:
               
60-211
               

               
Cow position:
               
chr1:82115922-82115778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
60-212
               

               
Cow position:
               
chr1:60987055-60987204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
60-212
               

               
Cow position:
               
chr1:67160224-67160074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 58
               

               
Conread position:
               
60-214
               

               
Cow position:
               
chr1:2935222-2935380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
61-207
               

               
Cow position:
               
chr1:4618676-4618534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
61-214
               

               
Cow position:
               
chr1:68696476-68696627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
62-204
               

               
Cow position:
               
chr1:102501049-102500908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 30
               

               
Conread position:
               
62-215
               

               
Cow position:
               
chr1:7962730-7962883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 48
               

               
Conread position:
               
63-218
               

               
Cow position:
               
chr1:17443953-17444106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
140, 46
               

               
Conread position:
               
66-192
               

               
Cow position:
               
chr1:66693829-66693708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
66-204
               

               
Cow position:
               
chr1:64139810-64139947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
66-210
               

               
Cow position:
               
chr1:34767359-34767505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
67-204
               

               
Cow position:
               
chr1:34952316-34952443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
68-215
               

               
Cow position:
               
chr1:4820524-4820673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
69-195
               

               
Cow position:
               
chr1:72650490-72650365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
69-207
               

               
Cow position:
               
chr1:57087918-57088059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 133
               

               
Conread position:
               
69-215
               

               
Cow position:
               
chr1:74027167-74027013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
48, 128
               

               
Conread position:
               
69-229
               

               
Cow position:
               
chr1:74319711-74319551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
141, 40
               

               
Conread position:
               
70-215
               

               
Cow position:
               
chr1:63190555-63190704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
71-213
               

               
Cow position:
               
chr1:8778258-8778123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
75-209
               

               
Cow position:
               
chr1:14067363-14067233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
76-204
               

               
Cow position:
               
chr1:84169390-84169515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
76-215
               

               
Cow position:
               
chr1:7597579-7597716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
77-216
               

               
Cow position:
               
chr1:20432532-20432394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
127, 43
               

               
Conread position:
               
78-204
               

               
Cow position:
               
chr1:77704860-77704736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
78-211
               

               
Cow position:
               
chr1:53442035-53441902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 41
               

               
Conread position:
               
78-219
               

               
Cow position:
               
chr1:67585632-67585768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
80-208
               

               
Cow position:
               
chr1:43144417-43144547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
81-216
               

               
Cow position:
               
chr1:101860054-101859921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
82-209
               

               
Cow position:
               
chr1:4303353-4303229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
82-209
               

               
Cow position:
               
chr1:36306763-36306888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
82-214
               

               
Cow position:
               
chr1:9478397-9478270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
83-204
               

               
Cow position:
               
chr1:20550979-20551098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
84-215
               

               
Cow position:
               
chr1:20217504-20217369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
84-220
               

               
Cow position:
               
chr1:36237867-36238001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
85-238
               

               
Cow position:
               
chr1:36090126-36089973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 36
               

               
Conread position:
               
86-211
               

               
Cow position:
               
chr1:25076144-25076019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-204
               

               
Cow position:
               
chr1:73576768-73576883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
87-209
               

               
Cow position:
               
chr1:95513930-95514050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
87-215
               

               
Cow position:
               
chr1:71650560-71650686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
88-212
               

               
Cow position:
               
chr1:80312159-80312035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
97-212
               

               
Cow position:
               
chr1:77620649-77620762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
112-218
               

               
Cow position:
               
chr1:6759931-6759825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.